>IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2|
          Length = 913

 Score = 34.3 bits (77), Expect = 0.29
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = -3

Query: 427 AVEREXXXXXXXXXXXXXSQATSPTPDAAIRPTSSATPRGRRTGGTQKDPPGT--KGSHS 254
           A ER               Q+ +  P +A     +A PRGRRTGG  +D  G   +GS  
Sbjct: 201 ASERPAAAAAPAPRTDARPQSAAAAPRSAPATPDAAAPRGRRTGGDDEDDRGAVRRGSSL 260

Query: 253 GVARRTITPWMASSMRRI 200
               + + P  A    R+
Sbjct: 261 PARGKVVAPAPAKPAARL 278

>LIMD1_MOUSE (Q9QXD8) LIM domains-containing protein 1|
          Length = 668

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = -3

Query: 508 PRNPRDPISGHSSRSPSTK*AADGHPRAVEREXXXXXXXXXXXXXSQATSPTPDAAIRPT 329
           PR  R P++G + +  S K AADG  +                  +Q + P+ +  IRP+
Sbjct: 72  PRAGRSPVNGGNRQGASGKLAADGAAKPPLAVPTVAPGLATTTAAAQPSYPSQEQRIRPS 131

Query: 328 SSATPRGRRTGGTQKDP 278
           +     G +  G+++ P
Sbjct: 132 AHGARPGSQNCGSREGP 148

>LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-binding protein 2|
           precursor (LTBP-2)
          Length = 1821

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 20/122 (16%)
 Frame = +3

Query: 132 STKVELIEIDLAEEDPSSVEVVGIRRM----EEAIHGVMVRRATPEWLPFVPGGSFW--- 290
           S    L+++ +     +SV++  + ++    EEA+    V    P WLP  PG S W   
Sbjct: 468 SVNPSLVKVHIHHPPEASVQIHQVAQVRGGVEEALVENSVETRPPPWLPASPGHSLWDSN 527

Query: 291 ------------VPPVR-RPRGVAELVGRIAASGVGEVACEAEPYVPMTEEEVLSLSTAR 431
                       +PP   RPRG   L+GR   + V      A P + +T +E    S   
Sbjct: 528 NIPARSGEPPRPLPPAAPRPRG---LLGRCYLNTVNGQC--ANPLLELTTQEDCCGSVGA 582

Query: 432 GW 437
            W
Sbjct: 583 FW 584

>L100_ADEGX (P36856) Late 100 kDa protein|
          Length = 798

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -3

Query: 367 ATSPTPDAAIRPTSSATPRGRRTGG 293
           ATS  P  A+RPTS AT  G RT G
Sbjct: 748 ATSAEPSRALRPTSVATAAGNRTRG 772

>GLGB1_STRCO (Q59833) 1,4-alpha-glucan branching enzyme 1 (EC 2.4.1.18)|
           (Glycogen branching enzyme 1) (BE 1)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase 1)
          Length = 774

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
 Frame = -3

Query: 499 PRDPISGHSSRSPSTK*AADGHP------RAVEREXXXXXXXXXXXXXSQATSPTPDAAI 338
           PR   SG   R  + K  A   P      +A +++             + + S   + A+
Sbjct: 3   PRPSSSGPDPRKTTGKKPAGKTPTGKKPAKAAKKKAPRRTTASANASATTSVSGA-EVAV 61

Query: 337 RPTSSATPRGRRTGGTQKDPPGTKGSH---SGVARRTITPW 224
            P   A  R R   GT  DP    G+H    GVA R   P+
Sbjct: 62  SPAPDAADRERLLAGTHHDPHAVLGAHRVPGGVAFRVFRPY 102

>ORB2_DROME (Q9VSR3) Probable RNA-binding protein orb2|
          Length = 704

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -3

Query: 367 ATSPTPDAAIRPTSSATPRGRRTGGTQKDPPGTKGS 260
           +TS +  AA  PTSS T  G    G  K PPG   S
Sbjct: 26  STSASASAATSPTSSGTAVGGILSGAPKSPPGLGSS 61

>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)|
          Length = 2441

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 4/103 (3%)
 Frame = -3

Query: 508  PRNPRDPISGHSSRSPSTK*AADGHPRAVEREXXXXXXXXXXXXXSQATSPTPDAAIRPT 329
            P  P  P+S   + +P+        P +V                    +P P   ++P 
Sbjct: 887  PTQPSTPVSSGQTPTPT--------PGSVPSAAQTQSTPTVQAAAQAQVTPQPQTPVQPP 938

Query: 328  SSATPRGRRTGGT--QKDPPGTKGSH--SGVARRTITPWMASS 212
            S ATP+  +   T     PPGT  S   + +  R  TP   +S
Sbjct: 939  SVATPQSSQQQPTPVHTQPPGTPLSQAAASIDNRVPTPSTVTS 981

>NUD16_MOUSE (Q6P3D0) Nucleoside diphosphate-linked moiety X motif 16 (EC|
           3.6.1.-) (Nudix motif 16)
          Length = 195

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 263 EPLGRGPPHHHAVDGLLHAPDPHDLHRR 180
           E L  GP   HA   LL+APDP  L  R
Sbjct: 11  EALALGPDWRHACHALLYAPDPRKLFGR 38

>104K_THEPA (P15711) 104 kDa microneme-rhoptry antigen precursor (p104)|
          Length = 924

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = -3

Query: 511 DPRNPRDPISGHSSRSPSTK*AADGHPRAVEREXXXXXXXXXXXXXSQATSP-TPDAAIR 335
           DP++PRDP     S+S          PR                   ++TSP +P    R
Sbjct: 576 DPKHPRDPKEPRKSKS----------PRTASPTRRPSPKLPQLSKLPKSTSPRSPPPPTR 625

Query: 334 PTSSATPRGRRTGGTQKDP 278
           P+S   P G +   T K P
Sbjct: 626 PSSPERPEGTKIIKTSKPP 644

>GLGB2_STRCO (Q59832) 1,4-alpha-glucan branching enzyme 2 (EC 2.4.1.18)|
           (Glycogen branching enzyme 2) (BE 2)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase 2)
          Length = 741

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -3

Query: 358 PTPDA-AIRPTSSATPRGRRTGGTQKDPPGTKGSH---SGVARRTITPW 224
           P P A A  P    T RGR   G   DP    G+H    G+A R + P+
Sbjct: 17  PAPGACATAPPLDPTDRGRLLAGAHHDPHSLLGAHPVPGGIAFRVLRPF 65

>GOGA3_HUMAN (Q08378) Golgin subfamily A member 3 (Golgin-160) (Golgi|
            complex-associated protein of 170 kDa) (GCP170)
          Length = 1498

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = +3

Query: 72   QSLARPSPATAASLLPLRGLSTKVELIEIDLAEEDPSSVEVVGIRRMEEAIHGVMVRRAT 251
            + L RP PA +    PL+ L++ ++ ++     ++  S++    R+MEE  H + V  + 
Sbjct: 1411 EELLRPPPAVSKE--PLKNLNSCLQQLK-----QEMDSLQ----RQMEE--HALTVHESL 1457

Query: 252  PEWLPFVPGGSFWVPPVRR--PRGVAELVGRIAASGVG 359
              W P  P  +  VPP     PRG  +   +  AS  G
Sbjct: 1458 SSWTPLEPATASPVPPGGHAGPRGDPQRHSQSRASKEG 1495

>GLGB1_STRAW (Q82JF0) 1,4-alpha-glucan branching enzyme 1 (EC 2.4.1.18)|
           (Glycogen branching enzyme 1) (BE 1)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase 1)
          Length = 838

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -3

Query: 370 QATSPTPDAAIRPTSSATPRGRRTGGTQKDPPGTKGSH---SGVARRTITPWMAS 215
           +A    P+A + P  +   R R   GT   P    G+H    GVA R + P+  S
Sbjct: 107 KAALDIPEAPVSPAVAPDDRDRLLSGTHHAPHSVLGAHPVPGGVAFRVLRPYALS 161

>IF2_DESVH (Q72ER1) Translation initiation factor IF-2|
          Length = 1079

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 361 SPTPDAAIRPTSSATPRGRRTGGTQKDPPGTKGSH 257
           +P P+   RP     P G+R GG +   P  +G +
Sbjct: 355 APRPEGGYRPAGGPRPEGQREGGYRPGAPRPEGGY 389

>HXB3_MOUSE (P09026) Homeobox protein Hox-B3 (Hox-2.7) (MH-23)|
          Length = 433

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 361 SPTPDAAIRPTSSATPRGRRTGGTQKDPPGTKGSHSGVARRTITPWMASS 212
           SP P AA  PTS+ +      G ++  PP      +    + I PWM  S
Sbjct: 89  SPPPSAA--PTSTTSNSNNGGGPSKSGPPKCGAGSNSTLTKQIFPWMKES 136

>GID_RHOCA (O68141) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 445

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 309 PRGVAELVGRIAASGVGEVACEAEPYVPMTEEEVLSLSTARGW 437
           P G A  V R A SG    A  A P + + EEE+  L     W
Sbjct: 89  PAGGALAVDREAFSGAVTAALRAHPLISVAEEEITELPAEGHW 131

>MIAA_BRAJA (Q89G43) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 318

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 46/177 (25%), Positives = 61/177 (34%), Gaps = 16/177 (9%)
 Frame = +3

Query: 75  SLARPSPATAASLLPLRGLSTKVELIEIDLAEEDPSSVEVVGIRRMEEAIHGVMVRRATP 254
           S+  P PA     +  R     VE +  +LA  DP +   + +R        + V  AT 
Sbjct: 122 SVVPPIPAEVREDVRARLERNGVEALHAELAARDPRAAGRLNLRDRTRIARALEVIEATG 181

Query: 255 EWL---------PFVPGGSFWVPPVRRPRGVAELVGRI-----AASGVGEVACEAEPYVP 392
             L         P +P  SF    V    G  EL  RI     A  G G +  E E    
Sbjct: 182 RSLLDWHQEGQPPLLPRDSFHA--VFLAPGRDELYARIDARFDAMLGAGALR-EVERLAA 238

Query: 393 MTEEEVLSLSTARGWPSAAYFVEGE--RDE*PEIGSRGLRGSFDRTHQNMLHPFPDF 557
              + +L    A G P+    + GE   DE   IG    R    R      H  P+F
Sbjct: 239 RQLDPLLPAMKAHGVPALIRHLRGELSLDEAATIGRADTRHYAKRQFTWFRHQLPEF 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,921,777
Number of Sequences: 219361
Number of extensions: 1324971
Number of successful extensions: 5489
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5462
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)