Clone Name | bart25b06 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_480814.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1206 Score = 141 bits (71), Expect = 3e-30 Identities = 143/167 (85%) Strand = Plus / Plus Query: 181 cgtcggtggaggtcgtggggatccggcgcatggaggaggccatccacggcgtgatggtgc 240 ||||||||||||| || ||| || ||||| |||||||||| ||||||||||| ||||||| Sbjct: 283 cgtcggtggaggtggtcggggtcaggcgcctggaggaggcgatccacggcgtcatggtgc 342 Query: 241 ggcgggccacgcccgagtggctccctttcgtgccgggcgggtccttctgggtgccccccg 300 | || || ||||||| |||||||| ||||| || || || || |||||||| |||||| Sbjct: 343 gccgcgcggcgcccgactggctccccttcgtccccgggggctcgttctgggttcccccca 402 Query: 301 tgcggcgcccccgcggggtcgccgagctcgtcggccggatcgcggcg 347 ||||||| |||| ||||||||| || ||||||||||||||||||||| Sbjct: 403 tgcggcggccccacggggtcgcggacctcgtcggccggatcgcggcg 449 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 390 cccatgacggaggaggaggtgctctccctctccacggcccgcgggtggccgtcggcggcc 449 ||||||||||||||||||| ||||||| ||||||| || || || ||||||||||| || Sbjct: 516 cccatgacggaggaggaggcgctctccttctccaccgcgcggggctggccgtcggcctcc 575 Query: 450 tacttcgtcgaagg 463 |||||||||||||| Sbjct: 576 tacttcgtcgaagg 589 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 109 ccctccttcccctccgcgggctctccacgaaggtggagctcatcgagatcgacctcgccg 168 ||||||| || |||||||| ||| |||| ||||| ||| ||||||||||||||||||||| Sbjct: 175 ccctcctccctctccgcggcctcgccaccaaggtcgaggtcatcgagatcgacctcgccg 234 Query: 169 agga 172 |||| Sbjct: 235 agga 238 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 52 cgatggctcgcctgctcgcgcaaagccta 80 ||||||||||||| |||||||||| |||| Sbjct: 106 cgatggctcgcctcctcgcgcaaacccta 134
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 141 bits (71), Expect = 3e-30 Identities = 143/167 (85%) Strand = Plus / Plus Query: 181 cgtcggtggaggtcgtggggatccggcgcatggaggaggccatccacggcgtgatggtgc 240 ||||||||||||| || ||| || ||||| |||||||||| ||||||||||| ||||||| Sbjct: 7905736 cgtcggtggaggtggtcggggtcaggcgcctggaggaggcgatccacggcgtcatggtgc 7905795 Query: 241 ggcgggccacgcccgagtggctccctttcgtgccgggcgggtccttctgggtgccccccg 300 | || || ||||||| |||||||| ||||| || || || || |||||||| |||||| Sbjct: 7905796 gccgcgcggcgcccgactggctccccttcgtccccgggggctcgttctgggttcccccca 7905855 Query: 301 tgcggcgcccccgcggggtcgccgagctcgtcggccggatcgcggcg 347 ||||||| |||| ||||||||| || ||||||||||||||||||||| Sbjct: 7905856 tgcggcggccccacggggtcgcggacctcgtcggccggatcgcggcg 7905902 Score = 93.7 bits (47), Expect = 6e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 390 cccatgacggaggaggaggtgctctccctctccacggcccgcgggtggccgtcggcggcc 449 ||||||||||||||||||| ||||||| ||||||| || || || ||||||||||| || Sbjct: 7905969 cccatgacggaggaggaggcgctctccttctccaccgcgcggggctggccgtcggcctcc 7906028 Query: 450 tacttcgtcgaaggtgagc 468 ||||||||||||||||||| Sbjct: 7906029 tacttcgtcgaaggtgagc 7906047 Score = 79.8 bits (40), Expect = 1e-11 Identities = 138/168 (82%), Gaps = 2/168 (1%) Strand = Plus / Plus Query: 181 cgtcggtggaggtcgtggggatccggcgcatggaggaggccatccacggcgtgatggtgc 240 ||||||||||| | || ||| || ||||| |||||||||| || || ||||| ||||||| Sbjct: 7883221 cgtcggtggagatggtcggggtcaggcgcctggaggaggcgattcatggcgtcatggtgc 7883280 Query: 241 ggcgggccacgcccgagtggctccctttcgt-gccgggcgggtccttctgggtgcccccc 299 | || | ||||||| | |||||| ||||| |||||| ||||| |||||||| |||||| Sbjct: 7883281 gccgtgtggcgcccgactagctccccttcgtcgccggg-gggtcgttctgggttcccccc 7883339 Query: 300 gtgcggcgcccccgcggggtcgccgagctcgtcggccggatcgcggcg 347 |||||| |||| ||||||||| | ||||||||||||||| ||||| Sbjct: 7883340 atgcggcagccccacggggtcgcgaacctcgtcggccggatcacggcg 7883387 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 109 ccctccttcccctccgcgggctctccacgaaggtggagctcatcgagatcgacctcgccg 168 ||||||| || |||||||| ||| |||| ||||| ||| ||||||||||||||||||||| Sbjct: 7905628 ccctcctccctctccgcggcctcgccaccaaggtcgaggtcatcgagatcgacctcgccg 7905687 Query: 169 agga 172 |||| Sbjct: 7905688 agga 7905691 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 120 ctccgcgggctctccacgaaggtggagctcatcgagatcgacctcgccgagga 172 |||||||| ||| ||| ||||| ||| ||||||||| ||||||||||||||| Sbjct: 7904755 ctccgcggcctcgccatcaaggtcgaggtcatcgagaccgacctcgccgagga 7904807 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 390 cccatgacggaggaggaggtgctctccctctccac 424 ||||||| ||||||||||| ||||||| ||||||| Sbjct: 7883451 cccatgatggaggaggaggcgctctccttctccac 7883485 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 52 cgatggctcgcctgctcgcgcaaagccta 80 ||||||||||||| |||||||||| |||| Sbjct: 7905559 cgatggctcgcctcctcgcgcaaacccta 7905587 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 52 cgatggctcgcctgctcgcgcaaagccta 80 ||||||||||||| |||||||||| |||| Sbjct: 7904685 cgatggctcgcctcctcgcgcaaacccta 7904713 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 124 gcgggctctccacgaaggtggagctcatcgagatcgacctc 164 |||| ||| |||| ||||| ||| ||||||||||||||||| Sbjct: 7879285 gcggcctcgccaccaaggttgaggtcatcgagatcgacctc 7879325
>dbj|AP005410.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0038P10 Length = 148527 Score = 141 bits (71), Expect = 3e-30 Identities = 143/167 (85%) Strand = Plus / Plus Query: 181 cgtcggtggaggtcgtggggatccggcgcatggaggaggccatccacggcgtgatggtgc 240 ||||||||||||| || ||| || ||||| |||||||||| ||||||||||| ||||||| Sbjct: 95627 cgtcggtggaggtggtcggggtcaggcgcctggaggaggcgatccacggcgtcatggtgc 95686 Query: 241 ggcgggccacgcccgagtggctccctttcgtgccgggcgggtccttctgggtgccccccg 300 | || || ||||||| |||||||| ||||| || || || || |||||||| |||||| Sbjct: 95687 gccgcgcggcgcccgactggctccccttcgtccccgggggctcgttctgggttcccccca 95746 Query: 301 tgcggcgcccccgcggggtcgccgagctcgtcggccggatcgcggcg 347 ||||||| |||| ||||||||| || ||||||||||||||||||||| Sbjct: 95747 tgcggcggccccacggggtcgcggacctcgtcggccggatcgcggcg 95793 Score = 93.7 bits (47), Expect = 6e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 390 cccatgacggaggaggaggtgctctccctctccacggcccgcgggtggccgtcggcggcc 449 ||||||||||||||||||| ||||||| ||||||| || || || ||||||||||| || Sbjct: 95860 cccatgacggaggaggaggcgctctccttctccaccgcgcggggctggccgtcggcctcc 95919 Query: 450 tacttcgtcgaaggtgagc 468 ||||||||||||||||||| Sbjct: 95920 tacttcgtcgaaggtgagc 95938 Score = 79.8 bits (40), Expect = 1e-11 Identities = 138/168 (82%), Gaps = 2/168 (1%) Strand = Plus / Plus Query: 181 cgtcggtggaggtcgtggggatccggcgcatggaggaggccatccacggcgtgatggtgc 240 ||||||||||| | || ||| || ||||| |||||||||| || || ||||| ||||||| Sbjct: 73112 cgtcggtggagatggtcggggtcaggcgcctggaggaggcgattcatggcgtcatggtgc 73171 Query: 241 ggcgggccacgcccgagtggctccctttcgt-gccgggcgggtccttctgggtgcccccc 299 | || | ||||||| | |||||| ||||| |||||| ||||| |||||||| |||||| Sbjct: 73172 gccgtgtggcgcccgactagctccccttcgtcgccggg-gggtcgttctgggttcccccc 73230 Query: 300 gtgcggcgcccccgcggggtcgccgagctcgtcggccggatcgcggcg 347 |||||| |||| ||||||||| | ||||||||||||||| ||||| Sbjct: 73231 atgcggcagccccacggggtcgcgaacctcgtcggccggatcacggcg 73278 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 109 ccctccttcccctccgcgggctctccacgaaggtggagctcatcgagatcgacctcgccg 168 ||||||| || |||||||| ||| |||| ||||| ||| ||||||||||||||||||||| Sbjct: 95519 ccctcctccctctccgcggcctcgccaccaaggtcgaggtcatcgagatcgacctcgccg 95578 Query: 169 agga 172 |||| Sbjct: 95579 agga 95582 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 120 ctccgcgggctctccacgaaggtggagctcatcgagatcgacctcgccgagga 172 |||||||| ||| ||| ||||| ||| ||||||||| ||||||||||||||| Sbjct: 94646 ctccgcggcctcgccatcaaggtcgaggtcatcgagaccgacctcgccgagga 94698 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 390 cccatgacggaggaggaggtgctctccctctccac 424 ||||||| ||||||||||| ||||||| ||||||| Sbjct: 73342 cccatgatggaggaggaggcgctctccttctccac 73376 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 52 cgatggctcgcctgctcgcgcaaagccta 80 ||||||||||||| |||||||||| |||| Sbjct: 95450 cgatggctcgcctcctcgcgcaaacccta 95478 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 52 cgatggctcgcctgctcgcgcaaagccta 80 ||||||||||||| |||||||||| |||| Sbjct: 94576 cgatggctcgcctcctcgcgcaaacccta 94604 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 124 gcgggctctccacgaaggtggagctcatcgagatcgacctc 164 |||| ||| |||| ||||| ||| ||||||||||||||||| Sbjct: 69176 gcggcctcgccaccaaggttgaggtcatcgagatcgacctc 69216
>dbj|AK067127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096C05, full insert sequence Length = 1206 Score = 141 bits (71), Expect = 3e-30 Identities = 143/167 (85%) Strand = Plus / Plus Query: 181 cgtcggtggaggtcgtggggatccggcgcatggaggaggccatccacggcgtgatggtgc 240 ||||||||||||| || ||| || ||||| |||||||||| ||||||||||| ||||||| Sbjct: 282 cgtcggtggaggtggtcggggtcaggcgcctggaggaggcgatccacggcgtcatggtgc 341 Query: 241 ggcgggccacgcccgagtggctccctttcgtgccgggcgggtccttctgggtgccccccg 300 | || || ||||||| |||||||| ||||| || || || || |||||||| |||||| Sbjct: 342 gccgcgcggcgcccgactggctccccttcgtccccgggggctcgttctgggttcccccca 401 Query: 301 tgcggcgcccccgcggggtcgccgagctcgtcggccggatcgcggcg 347 ||||||| |||| ||||||||| || ||||||||||||||||||||| Sbjct: 402 tgcggcggccccacggggtcgcggacctcgtcggccggatcgcggcg 448 Score = 75.8 bits (38), Expect = 2e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 390 cccatgacggaggaggaggtgctctccctctccacggcccgcgggtggccgtcggcggcc 449 ||||||||||||||||||| ||| ||| ||||||| || || || ||||||||||| || Sbjct: 515 cccatgacggaggaggaggcgctgtccttctccaccgcgcggggctggccgtcggcctcc 574 Query: 450 tacttcgtcgaagg 463 |||||||||||||| Sbjct: 575 tacttcgtcgaagg 588 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 109 ccctccttcccctccgcgggctctccacgaaggtggagctcatcgagatcgacctcgccg 168 ||||||| || |||||||| ||| |||| ||||| ||| ||||||||||||||||||||| Sbjct: 174 ccctcctccctctccgcggcctcgccaccaaggtcgaggtcatcgagatcgacctcgccg 233 Query: 169 agga 172 |||| Sbjct: 234 agga 237 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 52 cgatggctcgcctgctcgcgcaaagccta 80 ||||||||||||| |||||||||| |||| Sbjct: 105 cgatggctcgcctcctcgcgcaaacccta 133
>dbj|AP005517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0090H20 Length = 132628 Score = 79.8 bits (40), Expect = 1e-11 Identities = 138/168 (82%), Gaps = 2/168 (1%) Strand = Plus / Plus Query: 181 cgtcggtggaggtcgtggggatccggcgcatggaggaggccatccacggcgtgatggtgc 240 ||||||||||| | || ||| || ||||| |||||||||| || || ||||| ||||||| Sbjct: 114508 cgtcggtggagatggtcggggtcaggcgcctggaggaggcgattcatggcgtcatggtgc 114567 Query: 241 ggcgggccacgcccgagtggctccctttcgt-gccgggcgggtccttctgggtgcccccc 299 | || | ||||||| | |||||| ||||| |||||| ||||| |||||||| |||||| Sbjct: 114568 gccgtgtggcgcccgactagctccccttcgtcgccggg-gggtcgttctgggttcccccc 114626 Query: 300 gtgcggcgcccccgcggggtcgccgagctcgtcggccggatcgcggcg 347 |||||| |||| ||||||||| | ||||||||||||||| ||||| Sbjct: 114627 atgcggcagccccacggggtcgcgaacctcgtcggccggatcacggcg 114674 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 390 cccatgacggaggaggaggtgctctccctctccac 424 ||||||| ||||||||||| ||||||| ||||||| Sbjct: 114738 cccatgatggaggaggaggcgctctccttctccac 114772 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 124 gcgggctctccacgaaggtggagctcatcgagatcgacctc 164 |||| ||| |||| ||||| ||| ||||||||||||||||| Sbjct: 110572 gcggcctcgccaccaaggttgaggtcatcgagatcgacctc 110612
>ref|XM_473812.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 513 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 196 tggggatccggcgcatggaggaggccatccacggcgtgatggtgcggcgggccacgcccg 255 ||||||| ||||| ||||||| ||||||||||| || | ||||||||||| |||| | Sbjct: 194 tggggatgcggcgactggaggacgccatccacggggtactcgtgcggcgggcggcgccgg 253 Query: 256 agtggctccctttcgtgccgggcgggtccttctgggt 292 |||||||||| ||||||||||| || |||| |||||| Sbjct: 254 agtggctccccttcgtgccgggaggatcctactgggt 290 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 393 atgacggaggaggaggtgctctccctctccacggcccgcgggtggccgtcggcggcctac 452 ||||||||||||||| || | | |||| |||| |||||||||||||||| ||| ||| Sbjct: 376 atgacggaggaggagatgatgtgcctcaccaccatgcgcgggtggccgtcggaggcttac 435 Query: 453 ttcgtcgaagg 463 ||||||||||| Sbjct: 436 ttcgtcgaagg 446 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 136 cgaaggtggagctcatcgagatcgacct 163 ||||||||||| |||||||||||||||| Sbjct: 95 cgaaggtggagttcatcgagatcgacct 122
>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09, complete sequence Length = 152732 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 196 tggggatccggcgcatggaggaggccatccacggcgtgatggtgcggcgggccacgcccg 255 ||||||| ||||| ||||||| ||||||||||| || | ||||||||||| |||| | Sbjct: 119294 tggggatgcggcgactggaggacgccatccacggggtactcgtgcggcgggcggcgccgg 119235 Query: 256 agtggctccctttcgtgccgggcgggtccttctgggt 292 |||||||||| ||||||||||| || |||| |||||| Sbjct: 119234 agtggctccccttcgtgccgggaggatcctactgggt 119198 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 393 atgacggaggaggaggtgctctccctctccacggcccgcgggtggccgtcggcggcctac 452 ||||||||||||||| || | | |||| |||| |||||||||||||||| ||| ||| Sbjct: 119112 atgacggaggaggagatgatgtgcctcaccaccatgcgcgggtggccgtcggaggcttac 119053 Query: 453 ttcgtcgaaggtgag 467 ||||||||||||||| Sbjct: 119052 ttcgtcgaaggtgag 119038 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 136 cgaaggtggagctcatcgagatcgacct 163 ||||||||||| |||||||||||||||| Sbjct: 119393 cgaaggtggagttcatcgagatcgacct 119366
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 196 tggggatccggcgcatggaggaggccatccacggcgtgatggtgcggcgggccacgcccg 255 ||||||| ||||| ||||||| ||||||||||| || | ||||||||||| |||| | Sbjct: 30715563 tggggatgcggcgactggaggacgccatccacggggtactcgtgcggcgggcggcgccgg 30715504 Query: 256 agtggctccctttcgtgccgggcgggtccttctgggt 292 |||||||||| ||||||||||| || |||| |||||| Sbjct: 30715503 agtggctccccttcgtgccgggaggatcctactgggt 30715467 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 393 atgacggaggaggaggtgctctccctctccacggcccgcgggtggccgtcggcggcctac 452 ||||||||||||||| || | | |||| |||| |||||||||||||||| ||| ||| Sbjct: 30715381 atgacggaggaggagatgatgtgcctcaccaccatgcgcgggtggccgtcggaggcttac 30715322 Query: 453 ttcgtcgaaggtgag 467 ||||||||||||||| Sbjct: 30715321 ttcgtcgaaggtgag 30715307 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 136 cgaaggtggagctcatcgagatcgacct 163 ||||||||||| |||||||||||||||| Sbjct: 30715662 cgaaggtggagttcatcgagatcgacct 30715635 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 82 cccgcccctctccggccaccgc 103 |||||||||||||||||||||| Sbjct: 33866057 cccgcccctctccggccaccgc 33866036
>dbj|AK103790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145L05, full insert sequence Length = 1095 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 196 tggggatccggcgcatggaggaggccatccacggcgtgatggtgcggcgggccacgcccg 255 ||||||| ||||| ||||||| ||||||||||| || | ||||||||||| |||| | Sbjct: 235 tggggatgcggcgactggaggacgccatccacggggtactcgtgcggcgggcggcgccgg 294 Query: 256 agtggctccctttcgtgccgggcgggtccttctgggt 292 |||||||||| ||||||||||| || |||| |||||| Sbjct: 295 agtggctccccttcgtgccgggaggatcctactgggt 331 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 393 atgacggaggaggaggtgctctccctctccacggcccgcgggtggccgtcggcggcctac 452 ||||||||||||||| || | | |||| |||| |||||||||||||||| ||| ||| Sbjct: 417 atgacggaggaggagatgatgtgcctcaccaccatgcgcgggtggccgtcggaggcttac 476 Query: 453 ttcgtcgaagg 463 ||||||||||| Sbjct: 477 ttcgtcgaagg 487 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 136 cgaaggtggagctcatcgagatcgacct 163 ||||||||||| |||||||||||||||| Sbjct: 136 cgaaggtggagttcatcgagatcgacct 163
>gb|BT017278.1| Zea mays clone EL01N0313G07.c mRNA sequence Length = 826 Score = 60.0 bits (30), Expect = 9e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 204 cggcgcatggaggaggccatccacggcgtgatggtgcggcgggccacgcccgagtggctc 263 |||||| ||||||| |||||||| || ||| | ||||||||||| |||| || |||||| Sbjct: 239 cggcgcctggaggacgccatccatggggtgctcgtgcggcgggcggcgcctgaatggctc 298 Query: 264 cctttcgtgccggg 277 || ||||||||||| Sbjct: 299 cccttcgtgccggg 312 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Plus Query: 138 aaggtggagctcatcgagatcgacctcgccgaggag 173 |||||||| ||||||||||||||||| |||||||| Sbjct: 134 aaggtggacttcatcgagatcgacctctccgaggag 169
>ref|XM_480813.1| Oryza sativa (japonica cultivar-group), mRNA Length = 459 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 120 ctccgcgggctctccacgaaggtggagctcatcgagatcgacctcgccgagga 172 |||||||| ||| ||| ||||| ||| ||||||||| ||||||||||||||| Sbjct: 370 ctccgcggcctcgccatcaaggtcgaggtcatcgagaccgacctcgccgagga 422 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 52 cgatggctcgcctgctcgcgcaaagccta 80 ||||||||||||| |||||||||| |||| Sbjct: 300 cgatggctcgcctcctcgcgcaaacccta 328
>ref|XM_480809.1| Oryza sativa (japonica cultivar-group), mRNA Length = 210 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 390 cccatgacggaggaggaggtgctctccctctccac 424 ||||||| ||||||||||| ||||||| ||||||| Sbjct: 112 cccatgatggaggaggaggcgctctccttctccac 146
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 148 tcatcgagatcgacctcgccga 169 |||||||||||||||||||||| Sbjct: 1263429 tcatcgagatcgacctcgccga 1263408
>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete sequence Length = 145507 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 ccatctccgcatcctcctcgcc 42 |||||||||||||||||||||| Sbjct: 20635 ccatctccgcatcctcctcgcc 20614
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 ccatctccgcatcctcctcgcc 42 |||||||||||||||||||||| Sbjct: 32368507 ccatctccgcatcctcctcgcc 32368486
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 ccatctccgcatcctcctcgcc 42 |||||||||||||||||||||| Sbjct: 102274 ccatctccgcatcctcctcgcc 102253
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01, complete sequence Length = 163448 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 82 cccgcccctctccggccaccgc 103 |||||||||||||||||||||| Sbjct: 77956 cccgcccctctccggccaccgc 77935
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 ccatctccgcatcctcctcgcc 42 |||||||||||||||||||||| Sbjct: 32459017 ccatctccgcatcctcctcgcc 32458996
>emb|AL805981.11| Mouse DNA sequence from clone RP23-275G4 on chromosome 4, complete sequence Length = 210185 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 519 cgaacacatcaaaacatgctccatcc 544 ||||||||||||||||| |||||||| Sbjct: 153476 cgaacacatcaaaacattctccatcc 153451
>ref|XM_480807.1| Oryza sativa (japonica cultivar-group), mRNA Length = 162 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 124 gcgggctctccacgaaggtggagctcatcgagatcgacctc 164 |||| ||| |||| ||||| ||| ||||||||||||||||| Sbjct: 74 gcggcctcgccaccaaggttgaggtcatcgagatcgacctc 114
>ref|XM_365921.1| Magnaporthe grisea 70-15 hypothetical protein (MG10141.4) partial mRNA Length = 2478 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 ccatgacggaggaggaggtgc 411 ||||||||||||||||||||| Sbjct: 2111 ccatgacggaggaggaggtgc 2131
>emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome; segment 3/7 Length = 349823 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 224 ccacggcgtgatggtgcggcgggccacgc 252 |||||||| ||||||||||||||||||| Sbjct: 309698 ccacggcgcaatggtgcggcgggccacgc 309726
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 cccgcccctctccggccaccgccgc 106 |||||||| |||||||||||||||| Sbjct: 24886369 cccgccccactccggccaccgccgc 24886393
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tctcctcccatttccccatct 26 ||||||||||||||||||||| Sbjct: 12759191 tctcctcccatttccccatct 12759171
>gb|AC019055.6| Homo sapiens BAC clone RP11-111P18 from 2, complete sequence Length = 176383 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 cccatttccccatctccgcatcctcctcg 40 |||| |||||||||||| ||||||||||| Sbjct: 137443 cccagttccccatctcctcatcctcctcg 137471
>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489E06 Length = 140229 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tctcctcccatttccccatct 26 ||||||||||||||||||||| Sbjct: 39590 tctcctcccatttccccatct 39570
>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0554D10 Length = 158723 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tctcctcccatttccccatct 26 ||||||||||||||||||||| Sbjct: 126220 tctcctcccatttccccatct 126200
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 cccgcccctctccggccaccgccgc 106 |||||||| |||||||||||||||| Sbjct: 47652 cccgccccactccggccaccgccgc 47676
>gb|AC145960.3| Gallus gallus BAC clone CH261-18H1 from chromosome unknown, complete sequence Length = 204548 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 521 aacacatcaaaacatgctcca 541 ||||||||||||||||||||| Sbjct: 102309 aacacatcaaaacatgctcca 102329
>gb|AF019035.1|AF019035 Drosophila mauritiana M31 diptericin (Dipt) gene, complete cds Length = 345 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 cctctccggccaccgccgcctccct 112 |||||| |||||||||||||||||| Sbjct: 169 cctctctggccaccgccgcctccct 145
>gb|AF019034.1|AF019034 Drosophila melanogaster Z24 diptericin (Dipt) gene, complete cds Length = 345 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 cctctccggccaccgccgcctccct 112 |||||| |||||||||||||||||| Sbjct: 169 cctctctggccaccgccgcctccct 145
>gb|AF019033.1|AF019033 Drosophila melanogaster Z22 diptericin (Dipt) gene, complete cds Length = 345 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 cctctccggccaccgccgcctccct 112 |||||| |||||||||||||||||| Sbjct: 169 cctctctggccaccgccgcctccct 145
>gb|AF019032.1|AF019032 Drosophila melanogaster Z18 diptericin (Dipt) gene, complete cds Length = 345 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 cctctccggccaccgccgcctccct 112 |||||| |||||||||||||||||| Sbjct: 169 cctctctggccaccgccgcctccct 145
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tcggtggaggtcgtggggat 202 |||||||||||||||||||| Sbjct: 885870 tcggtggaggtcgtggggat 885889
>ref|XM_509822.1| PREDICTED: Pan troglodytes similar to KIAA0360 (LOC452766), mRNA Length = 3378 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cggccaccgccgcctccctc 113 |||||||||||||||||||| Sbjct: 286 cggccaccgccgcctccctc 305
>ref|XM_507824.1| PREDICTED: Pan troglodytes similar to nucleolar protein GU2; RNA helicase II/Gu beta (LOC450499), mRNA Length = 2616 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggccaccgccgcctccctcc 114 |||||||||||||||||||| Sbjct: 341 ggccaccgccgcctccctcc 322
>ref|XM_478422.1| Oryza sativa (japonica cultivar-group), mRNA Length = 872 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctccggccaccgccgcctcc 110 |||||||||||||||||||| Sbjct: 442 ctccggccaccgccgcctcc 423
>ref|XM_478421.1| Oryza sativa (japonica cultivar-group), mRNA Length = 787 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctccggccaccgccgcctcc 110 |||||||||||||||||||| Sbjct: 360 ctccggccaccgccgcctcc 341
>ref|XM_506371.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0036M16.111-2 mRNA Length = 801 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctccggccaccgccgcctcc 110 |||||||||||||||||||| Sbjct: 407 ctccggccaccgccgcctcc 388
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tcggtggaggtcgtggggat 202 |||||||||||||||||||| Sbjct: 886170 tcggtggaggtcgtggggat 886189
>gb|AC139562.8| Mus musculus chromosome 5, clone RP24-180G11, complete sequence Length = 168158 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccgccgcctccctccttccc 119 |||||||||||||||||||| Sbjct: 32077 ccgccgcctccctccttccc 32058
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10, complete sequence Length = 156772 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 ccgcctccctccttcccctc 122 |||||||||||||||||||| Sbjct: 48672 ccgcctccctccttcccctc 48653
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcgtcggccggatcgcggcgtccg 351 |||||||||||||||||| ||||| Sbjct: 2934724 tcgtcggccggatcgcggtgtccg 2934701
>ref|XM_365611.1| Magnaporthe grisea 70-15 hypothetical protein (MG02313.4) partial mRNA Length = 11166 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 540 catccgtttccagatttccttgtg 563 ||||| |||||||||||||||||| Sbjct: 8823 catccttttccagatttccttgtg 8800
>gb|BC000272.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 50, mRNA (cDNA clone MGC:3199 IMAGE:3357684), complete cds Length = 2575 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggccaccgccgcctccctcc 114 |||||||||||||||||||| Sbjct: 103 ggccaccgccgcctccctcc 84
>ref|XM_957907.1| Neurospora crassa OR74A hypothetical protein (NCU06188.1) partial mRNA Length = 267 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 ccacggcgtgatggtgcggc 243 |||||||||||||||||||| Sbjct: 180 ccacggcgtgatggtgcggc 199
>ref|XM_326042.1| Neurospora crassa OR74A hypothetical protein (NCU06188.1) partial mRNA Length = 267 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 ccacggcgtgatggtgcggc 243 |||||||||||||||||||| Sbjct: 180 ccacggcgtgatggtgcggc 199
>ref|XM_987976.1| PREDICTED: Mus musculus hypothetical protein LOC671596 (LOC671596), mRNA Length = 621 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 gcggggtcgccgagctcgtcggcc 336 |||||||||||||||||| ||||| Sbjct: 26 gcggggtcgccgagctcggcggcc 3
>ref|XM_001000799.1| PREDICTED: Mus musculus hypothetical protein LOC677131 (LOC677131), mRNA Length = 621 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 gcggggtcgccgagctcgtcggcc 336 |||||||||||||||||| ||||| Sbjct: 26 gcggggtcgccgagctcggcggcc 3
>ref|XM_974128.1| PREDICTED: Mus musculus hypothetical protein LOC665040 (LOC665040), mRNA Length = 621 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 gcggggtcgccgagctcgtcggcc 336 |||||||||||||||||| ||||| Sbjct: 26 gcggggtcgccgagctcggcggcc 3
>ref|XM_537866.2| PREDICTED: Canis familiaris similar to Transcription elongation factor A protein 2 (Transcription elongation factor S-II protein 2) (Testis-specific S-II) (Transcription elongation factor TFIIS.l) (LOC480747), mRNA Length = 1555 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tctgggtgccccccgtgcgg 305 |||||||||||||||||||| Sbjct: 1222 tctgggtgccccccgtgcgg 1203
>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14 Length = 307550 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcgtcggccggatcgcggcgtccg 351 |||||||||||||||||| ||||| Sbjct: 88537 tcgtcggccggatcgcggtgtccg 88514
>gb|BC014263.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 50, mRNA (cDNA clone IMAGE:4810686), partial cds Length = 878 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggccaccgccgcctccctcc 114 |||||||||||||||||||| Sbjct: 50 ggccaccgccgcctccctcc 31
>ref|NM_024045.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 (DDX50), mRNA Length = 2575 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggccaccgccgcctccctcc 114 |||||||||||||||||||| Sbjct: 103 ggccaccgccgcctccctcc 84
>emb|AL589984.7| Human DNA sequence from clone RP1-49A18 on chromosome 6 Contains a novel gene (HSPC239), the 3' end of a novel gene (FLJ20330, FLJ30569, FLJ23357) and two CpG islands, complete sequence Length = 84388 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccgccgcctccctccttccc 119 |||||||||||||||||||| Sbjct: 25413 ccgccgcctccctccttccc 25394
>emb|AL359844.15| Human DNA sequence from clone RP11-314J18 on chromosome 10 Contains the gene for a novel protein (FLJ25162), the GU2 gene for nucleolar protein GU2 (GUB, MGC3199, RH-II/GuB), the DDX21 gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 21 (GUA, GURDB, RH-II/GU, RH-II/GuA), the gene for a novel protein (DKFZP586B0923)(KIAA1279), an endothelial-derived gene 1 (EG1)(EG-1, DKFZP434N185) pseudogene, an actin, beta (ACTB) pseudogene and three CpG islands, complete sequence Length = 171364 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggccaccgccgcctccctcc 114 |||||||||||||||||||| Sbjct: 42942 ggccaccgccgcctccctcc 42923
>emb|AL357147.12| Human DNA sequence from clone RP1-29M21 on chromosome 10, complete sequence Length = 34758 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tctcctcccatttccccatc 25 |||||||||||||||||||| Sbjct: 19891 tctcctcccatttccccatc 19872
>emb|AL136081.10| Human DNA sequence from clone RP5-886K12 on chromosome 6, complete sequence Length = 99850 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 ccgcctccctccttcccctc 122 |||||||||||||||||||| Sbjct: 21111 ccgcctccctccttcccctc 21092
>gb|AC159539.6| Mus musculus chromosome 5, clone RP23-228F6, complete sequence Length = 238599 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccgccgcctccctccttccc 119 |||||||||||||||||||| Sbjct: 195638 ccgccgcctccctccttccc 195619
>emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 on chromosome 20q13.1 Contains the CDH22 gene for cadherin-like 22, a novel gene and two CpG islands, complete sequence Length = 147815 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 88 cctctccggccaccgccgcctccctccttccc 119 ||||||| || |||||| |||||||||||||| Sbjct: 118446 cctctccagctaccgccccctccctccttccc 118415
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13 Length = 346051 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcgtcggccggatcgcggcgtccg 351 |||||||||||||||||| ||||| Sbjct: 165544 tcgtcggccggatcgcggtgtccg 165521
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 337 ggatcgcggcgtccggggtcggcgaggt 364 ||||| |||||||| ||||||||||||| Sbjct: 188304 ggatcccggcgtcccgggtcggcgaggt 188277
>emb|AL606521.24| Mouse DNA sequence from clone RP23-280J3 on chromosome 11 Contains the 5' end of the Mtmr3 gene for myotubularin related protein 3, two novel genes, the gene for a novel protein similar to human ASC-1 complex subunit P100, the gene for a novel protein similar to human ubiquinol-cytochrome C reductase complex 7.2 kDa protein UQCR10, the Cabp7 gene for calcium binding protein 7, the 3' end of the Nf2 gene for neurofibromatosis 2 and two CpG islands, complete sequence Length = 233997 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 gcggggtcgccgagctcgtcggcc 336 |||||||||||||||||| ||||| Sbjct: 12182 gcggggtcgccgagctcggcggcc 12159
>emb|AL109630.2|DMBR7A4 Drosophila melanogaster BAC clone BACR7A4 Length = 212370 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 atccgtttccagatttcctt 560 |||||||||||||||||||| Sbjct: 35208 atccgtttccagatttcctt 35189
>emb|CR861451.1| Pongo pygmaeus mRNA; cDNA DKFZp459C132 (from clone DKFZp459C132) Length = 4417 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggccaccgccgcctccctcc 114 |||||||||||||||||||| Sbjct: 58 ggccaccgccgcctccctcc 39
>emb|CR626678.1| full-length cDNA clone CS0DB004YG08 of Neuroblastoma Cot 10-normalized of Homo sapiens (human) Length = 1215 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ccgccgcctccctccttccc 119 |||||||||||||||||||| Sbjct: 63 ccgccgcctccctccttccc 82
>emb|CR618753.1| full-length cDNA clone CS0DM001YD04 of Fetal liver of Homo sapiens (human) Length = 2449 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggccaccgccgcctccctcc 114 |||||||||||||||||||| Sbjct: 52 ggccaccgccgcctccctcc 33
>emb|CR616365.1| full-length cDNA clone CS0DL011YL17 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1649 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ccgccgcctccctccttccc 119 |||||||||||||||||||| Sbjct: 9 ccgccgcctccctccttccc 28
>dbj|AK093710.1| Homo sapiens cDNA FLJ36391 fis, clone THYMU2009023, highly similar to Homo sapiens ribonucleoprotein mRNA Length = 1733 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggccaccgccgcctccctcc 114 |||||||||||||||||||| Sbjct: 101 ggccaccgccgcctccctcc 82
>gb|DQ413021.1| Rhizobium tropici isolate RP261 NifH (nifH) gene, partial cds Length = 715 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cgagatcgacctcgccgagg 171 |||||||||||||||||||| Sbjct: 511 cgagatcgacctcgccgagg 530
>dbj|AK056044.1| Homo sapiens cDNA FLJ31482 fis, clone NT2NE2001666, weakly similar to PUTATIVE ATP-DEPENDENT RNA HELICASE YDL031W Length = 1853 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggccaccgccgcctccctcc 114 |||||||||||||||||||| Sbjct: 37 ggccaccgccgcctccctcc 18
>gb|AC097726.4| Drosophila melanogaster X BAC RP98-5N14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 146717 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 atccgtttccagatttcctt 560 |||||||||||||||||||| Sbjct: 35578 atccgtttccagatttcctt 35559
>gb|AF334103.1| Homo sapiens nucleolar protein GU2 mRNA, complete cds Length = 2485 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggccaccgccgcctccctcc 114 |||||||||||||||||||| Sbjct: 80 ggccaccgccgcctccctcc 61
>gb|AF387365.1|AF387365 Chlamydomonas reinhardtii pyruvate dehydrogenase kinase-like protein (pdk) gene, complete cds Length = 5813 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 82 cccgcccctctccggccaccgccgcctccctc 113 |||||||||||||| || ||||| |||||||| Sbjct: 2078 cccgcccctctccgccccccgccccctccctc 2047
>gb|DQ284983.1| Rhizobium sp. NCHA22 NifH (nifH) gene, partial cds Length = 800 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cgagatcgacctcgccgagg 171 |||||||||||||||||||| Sbjct: 561 cgagatcgacctcgccgagg 580
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cggggtcgccgagctcgtcg 333 |||||||||||||||||||| Sbjct: 3677344 cggggtcgccgagctcgtcg 3677363
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 cctccctccttcccctccgc 125 |||||||||||||||||||| Sbjct: 4862153 cctccctccttcccctccgc 4862134
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gccaccgccgcctccctcct 115 |||||||||||||||||||| Sbjct: 20792670 gccaccgccgcctccctcct 20792651 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctccggccaccgccgcctcc 110 |||||||||||||||||||| Sbjct: 19882414 ctccggccaccgccgcctcc 19882395
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 204 cggcgcatggaggaggccatccacggcg 231 ||||| ||||||||||||||| |||||| Sbjct: 26878644 cggcggatggaggaggccatcgacggcg 26878617
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 ccgcctccctccttcccctc 122 |||||||||||||||||||| Sbjct: 4162193 ccgcctccctccttcccctc 4162174
>dbj|AK223445.1| Homo sapiens mRNA for TBC1 domain family, member 7 variant, clone: FCC112H07 Length = 1236 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ccgccgcctccctccttccc 119 |||||||||||||||||||| Sbjct: 31 ccgccgcctccctccttccc 50
>dbj|AK223297.1| Homo sapiens mRNA for nucleolar protein GU2 variant, clone: SYN06332 Length = 2027 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggccaccgccgcctccctcc 114 |||||||||||||||||||| Sbjct: 101 ggccaccgccgcctccctcc 82
>ref|XM_342840.2| PREDICTED: Rattus norvegicus similar to hypothetical protein (LOC362522), mRNA Length = 6363 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 ccatgacggaggaggaggtg 410 |||||||||||||||||||| Sbjct: 4892 ccatgacggaggaggaggtg 4911
>dbj|AP006753.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0039D04 Length = 184408 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gccaccgccgcctccctcct 115 |||||||||||||||||||| Sbjct: 3460 gccaccgccgcctccctcct 3441
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 204 cggcgcatggaggaggccatccacggcg 231 ||||| ||||||||||||||| |||||| Sbjct: 2405 cggcggatggaggaggccatcgacggcg 2378
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 204 cggcgcatggaggaggccatccacggcg 231 ||||| ||||||||||||||| |||||| Sbjct: 133270 cggcggatggaggaggccatcgacggcg 133243
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctccggccaccgccgcctcc 110 |||||||||||||||||||| Sbjct: 47064 ctccggccaccgccgcctcc 47045
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0650C03 Length = 144337 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctccggccaccgccgcctcc 110 |||||||||||||||||||| Sbjct: 122573 ctccggccaccgccgcctcc 122554
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120825 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 cctccctccttcccctccgc 125 |||||||||||||||||||| Sbjct: 76269 cctccctccttcccctccgc 76288
>gb|AE005064.1| Halobacterium sp. NRC-1 section 95 of 170 of the complete genome Length = 17685 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ggcgtccggggtcggcgagg 363 |||||||||||||||||||| Sbjct: 9227 ggcgtccggggtcggcgagg 9208
>gb|AY943644.1| Rhizobium lusitanum strain P1-7 NifH gene, partial cds Length = 434 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cgagatcgacctcgccgagg 171 |||||||||||||||||||| Sbjct: 215 cgagatcgacctcgccgagg 234
>emb|AJ322936.1|HSA322936 Homo sapiens genomic sequence surrounding NotI site, clone NR1-OO22R Length = 786 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggccaccgccgcctccctcc 114 |||||||||||||||||||| Sbjct: 87 ggccaccgccgcctccctcc 68
>dbj|AK099401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E16, full insert sequence Length = 830 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 204 cggcgcatggaggaggccatccacggcg 231 ||||| ||||||||||||||| |||||| Sbjct: 299 cggcggatggaggaggccatcgacggcg 326
>dbj|AK099296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138P10, full insert sequence Length = 787 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctccggccaccgccgcctcc 110 |||||||||||||||||||| Sbjct: 360 ctccggccaccgccgcctcc 341
>dbj|AK071773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111H14, full insert sequence Length = 800 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctccggccaccgccgcctcc 110 |||||||||||||||||||| Sbjct: 407 ctccggccaccgccgcctcc 388
>dbj|AK063798.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-F05, full insert sequence Length = 872 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctccggccaccgccgcctcc 110 |||||||||||||||||||| Sbjct: 442 ctccggccaccgccgcctcc 423
>gb|AE003419.2| Drosophila melanogaster chromosome X, section 3 of 74 of the complete sequence Length = 306598 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 atccgtttccagatttcctt 560 |||||||||||||||||||| Sbjct: 11905 atccgtttccagatttcctt 11886
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 cctccctccttcccctccgc 125 |||||||||||||||||||| Sbjct: 4862135 cctccctccttcccctccgc 4862116
>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141053 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 cctccctccttcccctccgc 125 |||||||||||||||||||| Sbjct: 97806 cctccctccttcccctccgc 97825
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 gatcgacctcgccgaggagg 174 |||||||||||||||||||| Sbjct: 158734 gatcgacctcgccgaggagg 158753
>gb|AF487824.1| Devosia neptuniae plasmid pSym NifH gene, partial cds Length = 384 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 cgagatcgacctcgccgagg 171 |||||||||||||||||||| Sbjct: 173 cgagatcgacctcgccgagg 154
>gb|M55225.1|RHMNIFH1A Rhizobium leguminosarum nitrogenase reductase (nifH) gene, partial transcribed region Length = 492 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cgagatcgacctcgccgagg 171 |||||||||||||||||||| Sbjct: 264 cgagatcgacctcgccgagg 283 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,797,260 Number of Sequences: 3902068 Number of extensions: 4797260 Number of successful extensions: 127321 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125406 Number of HSP's gapped (non-prelim): 1912 length of query: 609 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 586 effective length of database: 17,143,297,704 effective search space: 10045972454544 effective search space used: 10045972454544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)