Clone Information

BLAST Search Result

Clone Name	bart25b01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	BRE1B_PONPY (Q5RAU7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	34	0.081
2	BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	34	0.081
3	BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	33	0.14
4	BTBD2_HUMAN (Q9BX70) BTB/POZ domain-containing protein 2	33	0.18
5	NCA12_XENLA (P36335) Neural cell adhesion molecule 1-B precursor	31	0.69
6	GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis pro...	31	0.69
7	EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400...	31	0.90
8	PCX3_MOUSE (Q8VI59) Pecanex-like protein 3	30	1.2
9	ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atr...	30	1.2
10	ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atr...	30	1.2
11	MAAZ3_SCHCO (P37937) Mating-type protein A-alpha Z3	30	1.5
12	TRPB2_MAIZE (P43284) Tryptophan synthase beta chain 2, chloropla...	30	2.0
13	FBXW7_DROME (Q9VZF4) F-box/WD-repeat protein 7 (F-box and WD-40 ...	30	2.0
14	MILK2_HUMAN (Q8IY33) MICAL-like protein 2	30	2.0
15	ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P...	30	2.0
16	PHF8_HUMAN (Q9UPP1) PHD finger protein 8	29	2.6
17	OSBP1_HUMAN (P22059) Oxysterol-binding protein 1	29	2.6
18	3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)	29	2.6
19	DNAJ1_STRAW (Q82EX7) Chaperone protein dnaJ 1	29	2.6
20	SKI_HUMAN (P12755) Ski oncogene (C-ski)	29	3.4
21	KAP2_HUMAN (P13861) cAMP-dependent protein kinase type II-alpha ...	29	3.4
22	DNAJ1_STRAL (P96457) Chaperone protein dnaJ 1 (Fragment)	29	3.4
23	SNIP_MOUSE (Q9QWI6) p130Cas-associated protein (p140Cap) (SNAP-2...	28	4.5
24	MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1	28	4.5
25	MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 ...	28	4.5
26	CHEB2_AZOBR (Q8VL08) Chemotaxis response regulator protein-gluta...	28	4.5
27	Y480_TREPA (O83493) Hypothetical protein TP0480	28	5.8
28	GDB3_WHEAT (P04730) Gamma-gliadin (Gliadin B-III) (Fragment)	28	5.8
29	SYA_HALSA (Q9HN24) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-...	28	5.8
30	IE18_PRVIF (P11675) Immediate-early protein IE180	28	5.8
31	TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily pro...	28	5.8
32	VGLC_BHV1C (P14378) Glycoprotein GIII precursor	28	5.8
33	V70K_PLRV1 (P17519) 69.7 kDa protein (ORF 2)	28	5.8
34	SSY23_ORYSA (Q5DWW9) Soluble starch synthase 2-3, chloroplast pr...	28	5.8
35	NCA11_XENLA (P16170) Neural cell adhesion molecule 1-A precursor	28	5.8
36	FAS2_YEAST (P19097) Fatty acid synthase alpha subunit (EC 2.3.1....	28	5.8
37	PSAA_TORCL (Q9MUJ0) Photosystem I P700 chlorophyll a apoprotein ...	28	7.6
38	RORG_MOUSE (P51450) Nuclear receptor ROR-gamma (Nuclear receptor...	28	7.6
39	DRS1_DEBHA (Q6BTL5) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)	28	7.6
40	TAF9_DROME (Q27272) Transcription initiation factor TFIID subuni...	28	7.6
41	IF2_PARUW (Q6MD64) Translation initiation factor IF-2	28	7.6
42	MYCN_MARMO (Q61976) N-myc proto-oncogene protein (N-myc1)	28	7.6
43	GYRB_SALTY (P0A2I3) DNA gyrase subunit B (EC 5.99.1.3)	28	7.6
44	GYRB_SALTI (P0A2I4) DNA gyrase subunit B (EC 5.99.1.3)	28	7.6
45	TYPH_RALSO (Q8Y2X7) Putative thymidine phosphorylase (EC 2.4.2.4...	28	7.6
46	IE18_PRVKA (P33479) Immediate-early protein IE180	28	7.6
47	ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P...	28	7.6
48	LPSL_RHIME (O54067) UDP-glucuronate 5'-epimerase (EC 5.1.3.12) (...	28	7.6
49	TILS_CAUCR (Q9A3H7) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR...	27	9.9
50	NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alph...	27	9.9
51	MMP9_RAT (P50282) Matrix metalloproteinase-9 precursor (EC 3.4.2...	27	9.9
52	GEPH_RAT (Q03555) Gephyrin (Putative glycine receptor-tubulin li...	27	9.9

>BRE1B_PONPY (Q5RAU7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
           finger protein 40)
          Length = 1001

 Score = 34.3 bits (77), Expect = 0.081
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -3

Query: 189 PACTVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVRERE 37
           P  T TT+S  + E + +    + +T G+  P+  GR+++AR    +RERE
Sbjct: 568 PGTTTTTTSVKKEELVPSEEDVQGLTPGAQGPSSRGRESEARPKRELRERE 618

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>BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
           finger protein 40) (95 kDa retinoblastoma-associated
           protein) (RBP95)
          Length = 1001

 Score = 34.3 bits (77), Expect = 0.081
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -3

Query: 189 PACTVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVRERE 37
           P  T TT+S  + E + +    + IT G+  P+  GR+ +AR    +RERE
Sbjct: 568 PGTTTTTTSVKKEELVPSEEDFQGITPGAQGPSSRGREPEARPKRELRERE 618

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>BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
           finger protein 40)
          Length = 1001

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 189 PACTVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVRERE 37
           P  T TT+S  + E + +    + +T G+  P+  GR+ +AR    +RERE
Sbjct: 568 PGTTTTTTSVKKEELVPSEEDVQGLTLGAQGPSSRGREPEARPKRELRERE 618

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>BTBD2_HUMAN (Q9BX70) BTB/POZ domain-containing protein 2|
          Length = 525

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -3

Query: 186 ACTVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVREREEGWSWRWSVQ 7
           A    T + G   +   AA +     G  PPAP G   DA+ +GA R  E       ++Q
Sbjct: 30  ANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPGTDAQAAGAERAEEAAGPGAAALQ 89

Query: 6   KQ 1
           ++
Sbjct: 90  RE 91

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>NCA12_XENLA (P36335) Neural cell adhesion molecule 1-B precursor|
          Length = 1092

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 180  TVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVREREE 34
            +  TS+A  P ++    T+    T SPPP PE +Q     SG     +E
Sbjct: 918  SAATSAAEPPTAIIKPVTTVPANTTSPPPTPEPKQVKQEQSGTKSPEKE 966

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>GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis protein 5-like 2|
           (EC 2.3.1.48) (Histone acetyltransferase GCN5) (mmGCN5)
          Length = 830

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 231 APTPQPVLV-LPLDWPACTVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSG 55
           AP P P     PL  PA   T++ A  P S  T A      T +P PAP    A + GSG
Sbjct: 7   APNPVPAAQPRPLHSPAPAPTSTPAPSPASASTPAP-----TPAPAPAPAAAPAGSTGSG 61

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>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
            SWI2/SNF2-related protein) (Domino homolog) (hDomino)
            (CAG repeat protein 32) (Trinucleotide repeat-containing
            gene 12 protein)
          Length = 3160

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -3

Query: 225  TPQPVLVLPLDWPA-CTVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAV 49
            T Q     P   PA  + T +S   P  L    T++  T G PPP P+   + A G  A+
Sbjct: 1526 TSQASASAPRHQPASASSTAASPAHPAKLRAQTTAQAFTPGQPPPQPQA-PSHAAGQSAL 1584

Query: 48   RER 40
             +R
Sbjct: 1585 PQR 1587

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>PCX3_MOUSE (Q8VI59) Pecanex-like protein 3|
          Length = 1620

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -3

Query: 219  QPVLVLPLDWPACTVTTSSAGRPESLCTAATSRLITTGSPP--PAPEGRQADARGSGAVR 46
            QP+   P   P  +++ S  GRP  L      RL   G PP  PAP      +R SG   
Sbjct: 1461 QPLPPGPSWGPRPSLSGSGDGRPPPLLQWPPPRL--PGPPPASPAPTEGPRPSRPSGPAL 1518

Query: 45   EREEGWSWRWSV 10
               EG S +WS+
Sbjct: 1519 LNSEGPSGKWSL 1530

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>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1185

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 231 APTPQPVLVLPLDWPACTVTTSSAGRPESLCTAATSRL-ITTGSPP-PAPEGRQADARGS 58
           AP P P        P  TVTTSSA     + T A+S     T SPP P P G++A + G+
Sbjct: 592 APYPFP--------PVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGA 643

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>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1186

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 231 APTPQPVLVLPLDWPACTVTTSSAGRPESLCTAATSRL-ITTGSPP-PAPEGRQADARGS 58
           AP P P        P  TVTTSSA     + T A+S     T SPP P P G++A + G+
Sbjct: 593 APYPFP--------PVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGA 644

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>MAAZ3_SCHCO (P37937) Mating-type protein A-alpha Z3|
          Length = 891

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -3

Query: 234 LAPTPQPVLVLPLDWPACTVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARG 61
           L+P P PV + P   P  TV + +   P S  T  +S  +    P PAP  R   + G
Sbjct: 522 LSPPPAPVTMGPDGVPLGTVPSKTTKAPASTSTTKSS-TVQVHIPLPAPSSRSIPSSG 578

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>TRPB2_MAIZE (P43284) Tryptophan synthase beta chain 2, chloroplast precursor|
           (EC 4.2.1.20) (Orange pericarp 2) (Fragment)
          Length = 443

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 108 GSPPPAPEGRQADARGSGA 52
           G PPPAPEGR+   RG  A
Sbjct: 2   GPPPPAPEGRRRRGRGRNA 20

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>FBXW7_DROME (Q9VZF4) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein|
           7) (Protein archipelago)
          Length = 1326

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 180 TVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVREREEGWS 25
           T +T+ A R  +       R +T  +PP A       A  + +VR+R  G S
Sbjct: 592 TTSTTKAARQVNASAQTQERFLTRSNPPAASGAGSVGANPTASVRQRRNGSS 643

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>MILK2_HUMAN (Q8IY33) MICAL-like protein 2|
          Length = 904

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 24/63 (38%), Positives = 29/63 (46%)
 Frame = -3

Query: 234 LAPTPQPVLVLPLDWPACTVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSG 55
           LAPTP    V P    +  +  SSA      CTAA +       PP AP+ R A  +G G
Sbjct: 327 LAPTPTEGKVRPRVTNSSPMGWSSAAP----CTAAAAS--HPAVPPSAPDPRPATPQGGG 380

Query: 54  AVR 46
           A R
Sbjct: 381 APR 383

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>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -3

Query: 225 TPQPVLVLPLDWPACTVTTSSAGRPESLCTA-ATSRLITTGSPPPAPEGR--QADARGSG 55
           TP     +     A +V  SSA  P     A +T+  I+T +P P+P GR   AD R +G
Sbjct: 520 TPAAAAAVTAAAAAPSVARSSAPSPAVTAAATSTAAAISTRAPTPSPAGRAPAADPRRAG 579

Query: 54  A 52
           A
Sbjct: 580 A 580

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>PHF8_HUMAN (Q9UPP1) PHD finger protein 8|
          Length = 1060

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 135  AATSRLITTGSPPPAPEGRQADARGSGAVRE 43
            AAT +L+T+ SP P PE +Q    GS A  E
Sbjct: 959  AATPQLVTSSSPLPPPEPKQEALSGSLADHE 989

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>OSBP1_HUMAN (P22059) Oxysterol-binding protein 1|
          Length = 807

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -3

Query: 180 TVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVREREEGWSWRWS 13
           TV  ++AG P        +  +    P PAP    +   G+G      EGW ++W+
Sbjct: 49  TVVAAAAGGP-----GPGAGGVAAAGPAPAPPTGGSGGSGAGGSGSAREGWLFKWT 99

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>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)|
          Length = 701

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -3

Query: 174 TTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVREREE 34
           T S     E L + A     TT +P PAP    A A  S A +ER E
Sbjct: 489 TVSDRLASEELPSTAVPTPATTPAPAPAPAPAPAPALASAATKERTE 535

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>DNAJ1_STRAW (Q82EX7) Chaperone protein dnaJ 1|
          Length = 396

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 117 ITTGSPPPAPEGRQADARGSGAVRE 43
           +T   PP  P GR   ARG GAVR+
Sbjct: 322 VTLKLPPGTPNGRTMRARGKGAVRK 346

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>SKI_HUMAN (P12755) Ski oncogene (C-ski)|
          Length = 728

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
 Frame = -3

Query: 234 LAPTPQPVLVLPLDWPACTVTTSSAGRPESLCTAATSRLITTGSP-------PPAPEGRQ 76
           LAP  Q  +V     P C    S A  P + CT    R +T  +P       P A     
Sbjct: 421 LAPPAQQKVVSS---PPCAAAVSRAPEPLATCTQPRKRKLTVDTPGAPETLAPVAAPEED 477

Query: 75  ADARGSGAVREREE 34
            D+     V  REE
Sbjct: 478 KDSEAEVEVESREE 491

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>KAP2_HUMAN (P13861) cAMP-dependent protein kinase type II-alpha regulatory|
           subunit
          Length = 403

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 162 AGRPESLCTAATSRLITTGSPPPAP-EGRQADARGSGAVREREE 34
           A  P S+  AAT R  + G PPP P   R ADA+G     E E+
Sbjct: 42  ARAPASVLPAATPRQ-SLGHPPPEPGPDRVADAKGDSESEEDED 84

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>DNAJ1_STRAL (P96457) Chaperone protein dnaJ 1 (Fragment)|
          Length = 82

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 117 ITTGSPPPAPEGRQADARGSGAVRE 43
           +T   PP  P GR   ARG GAVR+
Sbjct: 8   VTLKLPPGTPAGRTMRARGKGAVRK 32

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>SNIP_MOUSE (Q9QWI6) p130Cas-associated protein (p140Cap) (SNAP-25-interacting|
           protein) (SNIP)
          Length = 1250

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +2

Query: 35  SSLSRTAPLPLASACLPSGAGGGDPVVISLDVAAVQRLSGRPAELVVTV--HAGQSKGST 208
           S L+ ++P P   + LPSG   G P    L  A      GRP     +   HA +  G  
Sbjct: 369 SHLASSSPPPGLPSGLPSGLPSGSPSRSRLSYA-----GGRPPSYAGSPVHHAAERLGGA 423

Query: 209 STGCGVGAS 235
            TG GV  S
Sbjct: 424 PTGQGVSPS 432

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>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1|
          Length = 2171

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 225  TPQPVLVLPLDWPACTVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVR 46
            T QP+   P+  P+C     +AG P SL      +     S P  P+ + +  +  GAVR
Sbjct: 1788 TDQPISPEPITQPSCIKRQRAAGNPGSLAAPIDHK---PCSAPLEPKSQASRNQRWGAVR 1844

Query: 45   ERE 37
              E
Sbjct: 1845 AAE 1847

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>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 225  TPQPVLVLPLDWPACTVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVR 46
            T QP+   P+  P+C     +AG P SL      +     S P  P+ + +  +  GAVR
Sbjct: 1706 TDQPISPEPITQPSCIKRQRAAGNPGSLAAPIDHK---PCSAPLEPKSQASRNQRWGAVR 1762

Query: 45   ERE 37
              E
Sbjct: 1763 AAE 1765

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>CHEB2_AZOBR (Q8VL08) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 2 operon (EC 3.1.1.61)
          Length = 394

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 56  PLPLASACLPSGAGGGDPV-VISLDVAAVQR 145
           P P A A  P+GA GGDPV V+ +D +AV R
Sbjct: 8   PPPPAPAGHPTGAAGGDPVRVMVVDDSAVIR 38

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>Y480_TREPA (O83493) Hypothetical protein TP0480|
          Length = 162

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 5  FCTLHLQDHPSSLSRTAPLPLASACLP 85
          F +LH   HP+ L+  A L LA A LP
Sbjct: 9  FRSLHANTHPADLAHAAALALALALLP 35

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>GDB3_WHEAT (P04730) Gamma-gliadin (Gliadin B-III) (Fragment)|
          Length = 244

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 228 PTPQPVLVLPLDWPACTVTTSSAGRPES 145
           P+PQP  V+ +  PA   T  SAG+P S
Sbjct: 28  PSPQPQQVVQIISPATPTTIPSAGKPTS 55

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>SYA_HALSA (Q9HN24) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 929

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 86  SGAGGGDPVVISLDVAAVQRLSGRPAELVVTVHAGQSKGSTSTGCGVGASRA 241
           SG G G+ V ++   A VQR+ G   EL  T +A    G  +   G GA  A
Sbjct: 815 SGGGAGEEVDVAGTTAVVQRVDGDMDELQATANALVDGGQVAV-VGSGADGA 865

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>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -3

Query: 174  TTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVR----EREEGWS 25
            T SS+G    L  ++         P PAPE R+   R  GA R    E +EG S
Sbjct: 864  TKSSSGTKSGLSGSSGYASSPAAGPDPAPERRKKKRRAPGARRPGDGEEDEGLS 917

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>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)|
          Length = 1544

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = -3

Query: 177  VTTSSAGRPESLCTAATSRL------ITTGSPPPAPEGRQADARGSGAVRERE 37
            +T +    P+   +A  +RL      I TG PPP PE     A+G GA +  +
Sbjct: 928  LTATEKKVPQPCSSATLNRLTVPRYSIPTGDPPPYPEIASQLAQGRGAAQRSD 980

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>VGLC_BHV1C (P14378) Glycoprotein GIII precursor|
          Length = 521

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
 Frame = -3

Query: 228 PTPQPVLVLPLDWPACTVTTSSAGRPESLCTAATSRLITTGSPPPAP--EGR-------Q 76
           PTP      P D  +    T+  G PE    +     +T  +PPPAP  +GR        
Sbjct: 56  PTPNSPDATPED--STPGATTPVGTPEPPSVSEHDPPVTNSTPPPAPPEDGRPGGAGNAS 113

Query: 75  ADARGSGAVRER 40
            D R SG  R R
Sbjct: 114 RDGRPSGGGRPR 125

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>V70K_PLRV1 (P17519) 69.7 kDa protein (ORF 2)|
          Length = 639

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -3

Query: 189 PACTVTTSSAGR----PESLCTAATSRLITTGSPPPAPEGRQADARGSGAVREREE 34
           P  T +TS A +    P++  +A TSR  TT +P   P G +  A+ + + R +++
Sbjct: 569 PTSTQSTSGAPKKEAAPQASGSAGTSRATTTPAPEAKPSGGKNSAKFTPSWRIKQQ 624

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>SSY23_ORYSA (Q5DWW9) Soluble starch synthase 2-3, chloroplast precursor (EC|
           2.4.1.21) (Soluble starch synthase II-3) (Starch
           synthase IIa)
          Length = 810

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -3

Query: 162 AGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVREREEG 31
           A  P  L      RL     PPP P  R+ DA   G VR  ++G
Sbjct: 34  AAPPALLYDGRAGRLALRAPPPPRPRPRRRDA---GVVRRADDG 74

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>NCA11_XENLA (P16170) Neural cell adhesion molecule 1-A precursor|
          Length = 1088

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -3

Query: 180  TVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARGSGAVREREE 34
            +  TS+A  P  +    T+      SPPP PE +Q     SG     +E
Sbjct: 914  SAATSAAEPPTVIIKPVTTVPPNAASPPPTPEPKQVKQEQSGTKSPEKE 962

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>FAS2_YEAST (P19097) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:|
           Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase
           (EC 1.1.1.100) (Beta-ketoacyl reductase);
           3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)
           (Beta-ketoacyl synth
          Length = 1887

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 14  LHLQDHPSSLSRTAPLPLASACLPSGAGGGDPVVISLDVAAVQRLSGRPAELVVTVH 184
           L  ++ P+     AP P ASA  P+ A    PV  +   AA   ++  P +  + +H
Sbjct: 97  LAAKEEPAKEEAPAPTPAASAPAPAAAAPA-PVAAAAPAAAAAEIADEPVKASLLLH 152

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>PSAA_TORCL (Q9MUJ0) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)|
           (PSI-A) (Fragment)
          Length = 719

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 22/53 (41%), Positives = 25/53 (47%)
 Frame = +2

Query: 29  HPSSLSRTAPLPLASACLPSGAGGGDPVVISLDVAAVQRLSGRPAELVVTVHA 187
           H SS S TAP   AS  L  G  GGD V +   VA +    G    LV  +HA
Sbjct: 479 HASSPSLTAPDATASTSLTWG--GGDLVAVGAKVALLPIPLGTADFLVHHIHA 529

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>RORG_MOUSE (P51450) Nuclear receptor ROR-gamma (Nuclear receptor RZR-gamma)|
           (Thymus orphan receptor) (TOR)
          Length = 516

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 11  TLHLQDHPSSLSRTAPLPLASACLPS---GAGGGDPVVISLDVAAVQRLSGRPAELVVTV 181
           TL L D    L  +  LP ASAC P     +G G P   +L    VQ   G    L  + 
Sbjct: 148 TLGLSDGQLPLGASPDLPEASACPPGLLRASGSGPPYSNTLAKTEVQ---GASCHLEYSP 204

Query: 182 HAGQSKGSTS 211
             G+++G  S
Sbjct: 205 ERGKAEGRDS 214

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>DRS1_DEBHA (Q6BTL5) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)|
          Length = 771

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
 Frame = +2

Query: 35  SSLSRTAPLPLASACLP---------SGAGGGDPVVISLDVAAVQRLSGRPAELVVT 178
           S L  T P P+ SAC+P         +GA  G     +  +  ++RL  +PA++  T
Sbjct: 274 SQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISST 330

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>TAF9_DROME (Q27272) Transcription initiation factor TFIID subunit 9|
           (Transcription initiation factor TFIID 42 kDa subunit)
           (TAFII-42) (TAFII40) (p42) (Protein enhancer of yellow
           1)
          Length = 278

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 86  SGAGGGDPVVISLDVAAVQRLSGRPAELVVTVHAGQSKGSTSTGCGVGASRALG 247
           +GAGG   + +  D AAV  ++G          +G   GS S G G G S  +G
Sbjct: 217 TGAGGDLKMEVDSDAAAVGSIAGA---------SGSGAGSASGGGGGGGSSGVG 261

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>IF2_PARUW (Q6MD64) Translation initiation factor IF-2|
          Length = 920

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 102 PPPAPEGRQADARGSGAVREREEGWSWRWSVQKQ 1
           P   PE RQ DAR    +R  +E   WR    KQ
Sbjct: 283 PARKPETRQFDARDRQGLRTSDEDQHWRKKKNKQ 316

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>MYCN_MARMO (Q61976) N-myc proto-oncogene protein (N-myc1)|
          Length = 460

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 53  APLPLASACLPS--GAGGGDPVVISLDVAAVQRLSGRPAELVVTVHAGQSKGSTSTG 217
           AP+P+A A  P+   A  G     S  VAA  RL GRPA      + G  K  +++G
Sbjct: 202 APVPVAPAGSPAVGAAVAGAAAPASAAVAAPPRLGGRPA------NGGDHKALSTSG 252

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>GYRB_SALTY (P0A2I3) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 803

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 89  GAGGGDPVVISLDVAAVQRLSGRPAELVVTVHAGQSKGSTSTGCGV 226
           G G    V   +D A  + L+G   ++VVT+HA  S   T  G G+
Sbjct: 32  GTGLHHMVFEVVDNAIDEALAGHCKDIVVTIHADNSVSVTDDGRGI 77

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>GYRB_SALTI (P0A2I4) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 803

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 89  GAGGGDPVVISLDVAAVQRLSGRPAELVVTVHAGQSKGSTSTGCGV 226
           G G    V   +D A  + L+G   ++VVT+HA  S   T  G G+
Sbjct: 32  GTGLHHMVFEVVDNAIDEALAGHCKDIVVTIHADNSVSVTDDGRGI 77

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>TYPH_RALSO (Q8Y2X7) Putative thymidine phosphorylase (EC 2.4.2.4) (TdRPase)|
          Length = 507

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 89  GAGGGDPVVISLDVAAVQRLSGRPAELVVTVHA 187
           G+G  +   +SL V+AV+ L  RP ++V   HA
Sbjct: 66  GSGLLEMCEVSLSVSAVETLMARPGDIVTVSHA 98

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>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
 Frame = -3

Query: 234  LAPTPQPVLV-----LPLDWPACTVTTSSAGRPESLCTAATSRLITTG-------SPPPA 91
            + P P P        LP   P+   +T S+   +S  +  +    ++G        P PA
Sbjct: 821  VVPAPAPAAAGAPSGLPGSGPSSPASTKSSSSTKSSSSTKSGLSGSSGYASSPAAGPDPA 880

Query: 90   PEGRQADARGSGAVR----EREEGWS 25
            PE R+   R  GA R    E +EG S
Sbjct: 881  PERRKKKRRAPGARRPGDGEEDEGLS 906

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>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -3

Query: 225 TPQPVLVLPLDWPACTVTTSSAGRPESLCTAA-TSRLITTGSPPPAPEGR--QADARGSG 55
           TP     +     A +V   SA  P     A  T+  I+T +P P+P GR   AD R +G
Sbjct: 520 TPAAAAAVTAAAAAPSVARGSAPSPAVTAAATGTAAAISTRAPTPSPAGRAPAADPRRAG 579

Query: 54  A 52
           A
Sbjct: 580 A 580

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>LPSL_RHIME (O54067) UDP-glucuronate 5'-epimerase (EC 5.1.3.12) (UDP-glucuronic|
           acid epimerase)
          Length = 341

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 38  SLSRTAPLPLASACLPSGAGGGDPVVISLDVAAVQRLSGRPA 163
           +LSR AP  + +       GGG PV +   V  V++  GRPA
Sbjct: 250 TLSRHAPFRVVNT------GGGQPVELMTFVETVEKAVGRPA 285

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>TILS_CAUCR (Q9A3H7) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 408

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 62  PLASACLPSG-AGGGDPVVISLDVAAVQRLSGRPAELVVTVHAGQSKGSTSTGCGVGASR 238
           P + A L  G +GGGD + +   V    R   RP   +V  H  Q + +  T   V  +R
Sbjct: 16  PASRAPLAVGFSGGGDSLFLLKTVLDWARPLDRPVLALVVDHQLQPQSTAWTAEAVAKAR 75

Query: 239 ALG 247
           ALG
Sbjct: 76  ALG 78

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>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,|
            muscle-specific form (Alpha-NAC, muscle-specific form)
          Length = 2187

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 228  PTPQPVLVLPLDWPACTVTTSSAGRP-ESLCTAATSRLITTGSP 100
            P+P+ V   PL+ P  +  TS    P E+L T ++ +L  T  P
Sbjct: 1399 PSPEGVTAAPLEIPISSKKTSKMASPKETLVTPSSKKLSQTVGP 1442

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>MMP9_RAT (P50282) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB)
          Length = 708

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = -3

Query: 228 PTPQPVLVLPLDWPACTVTTSSAGRPESLCTAATSRLITTGSPPPAPEG 82
           P P+P        PA T        P ++C+ A      TG P  AP G
Sbjct: 450 PDPRP--------PATTAAEPQPTAPPTMCSTAPPMAYPTGGPTVAPTG 490

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>GEPH_RAT (Q03555) Gephyrin (Putative glycine receptor-tubulin linker|
           protein)
          Length = 768

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 213 VLVLPLDWPACTVTTSSAGRPESLCTAATSRLITTGSPPPAPEGRQADARG 61
           V VLP D  + + T S + R +     ATSRL T   P P    R  +++G
Sbjct: 266 VQVLPRDTASLSTTPSESPRAQ-----ATSRLSTASCPTPKQIRRPDESKG 311


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.305    0.123    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,799,602
Number of Sequences: 219361
Number of extensions: 455007
Number of successful extensions: 1582
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result