Clone Name | bart25b01 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_191140.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1578 Score = 141 bits (71), Expect = 2e-30 Identities = 178/211 (84%), Gaps = 12/211 (5%) Strand = Plus / Plus Query: 107 cccgtcgtgatcagcctcgacgtcgccgccgtgcagaggctctcgggccgccccgccg-- 164 ||||| ||||| |||||||||| |||||| |||||||||||||||| |||||||||| Sbjct: 460 cccgtggtgataagcctcgacgccgccgcggtgcagaggctctcggcgcgccccgccgcc 519 Query: 165 -agctcgtcgtgaccgtgcacgcgggccagtccaaggggagcacgagcaccggctgcggc 223 ||||||||||| |||||||||| || ||| ||||||| ||| ||||||||||| Sbjct: 520 gagctcgtcgtgtccgtgcacgccgggcag---aagggga--acg----ccggctgcggc 570 Query: 224 gtgggcgccagccgcgccctcgggaaggtgcgcgtggccgtcgacgtggcgcgcgccgcc 283 || ||||| ||||||| || || | |||||| ||| |||||||||||||||||||||| Sbjct: 571 atgagcgccggccgcgcgctgggcagggtgcgggtgcccgtcgacgtggcgcgcgccgcg 630 Query: 284 gccggggagaccgtggtggcgcgcgacgggt 314 |||||||||||||| || ||||||||||||| Sbjct: 631 gccggggagaccgtcgtcgcgcgcgacgggt 661 Score = 63.9 bits (32), Expect = 3e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 2 tgcttctgcacgctccacctccaggaccaccc 33 |||||||||||||||||||||||||||||||| Sbjct: 349 tgcttctgcacgctccacctccaggaccaccc 380
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 141 bits (71), Expect = 2e-30 Identities = 178/211 (84%), Gaps = 12/211 (5%) Strand = Plus / Plus Query: 107 cccgtcgtgatcagcctcgacgtcgccgccgtgcagaggctctcgggccgccccgccg-- 164 ||||| ||||| |||||||||| |||||| |||||||||||||||| |||||||||| Sbjct: 30911638 cccgtggtgataagcctcgacgccgccgcggtgcagaggctctcggcgcgccccgccgcc 30911697 Query: 165 -agctcgtcgtgaccgtgcacgcgggccagtccaaggggagcacgagcaccggctgcggc 223 ||||||||||| |||||||||| || ||| ||||||| ||| ||||||||||| Sbjct: 30911698 gagctcgtcgtgtccgtgcacgccgggcag---aagggga--acg----ccggctgcggc 30911748 Query: 224 gtgggcgccagccgcgccctcgggaaggtgcgcgtggccgtcgacgtggcgcgcgccgcc 283 || ||||| ||||||| || || | |||||| ||| |||||||||||||||||||||| Sbjct: 30911749 atgagcgccggccgcgcgctgggcagggtgcgggtgcccgtcgacgtggcgcgcgccgcg 30911808 Query: 284 gccggggagaccgtggtggcgcgcgacgggt 314 |||||||||||||| || ||||||||||||| Sbjct: 30911809 gccggggagaccgtcgtcgcgcgcgacgggt 30911839 Score = 63.9 bits (32), Expect = 3e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 2 tgcttctgcacgctccacctccaggaccaccc 33 |||||||||||||||||||||||||||||||| Sbjct: 30911527 tgcttctgcacgctccacctccaggaccaccc 30911558
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0638D12 Length = 161277 Score = 141 bits (71), Expect = 2e-30 Identities = 178/211 (84%), Gaps = 12/211 (5%) Strand = Plus / Plus Query: 107 cccgtcgtgatcagcctcgacgtcgccgccgtgcagaggctctcgggccgccccgccg-- 164 ||||| ||||| |||||||||| |||||| |||||||||||||||| |||||||||| Sbjct: 112005 cccgtggtgataagcctcgacgccgccgcggtgcagaggctctcggcgcgccccgccgcc 112064 Query: 165 -agctcgtcgtgaccgtgcacgcgggccagtccaaggggagcacgagcaccggctgcggc 223 ||||||||||| |||||||||| || ||| ||||||| ||| ||||||||||| Sbjct: 112065 gagctcgtcgtgtccgtgcacgccgggcag---aagggga--acg----ccggctgcggc 112115 Query: 224 gtgggcgccagccgcgccctcgggaaggtgcgcgtggccgtcgacgtggcgcgcgccgcc 283 || ||||| ||||||| || || | |||||| ||| |||||||||||||||||||||| Sbjct: 112116 atgagcgccggccgcgcgctgggcagggtgcgggtgcccgtcgacgtggcgcgcgccgcg 112175 Query: 284 gccggggagaccgtggtggcgcgcgacgggt 314 |||||||||||||| || ||||||||||||| Sbjct: 112176 gccggggagaccgtcgtcgcgcgcgacgggt 112206 Score = 63.9 bits (32), Expect = 3e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 2 tgcttctgcacgctccacctccaggaccaccc 33 |||||||||||||||||||||||||||||||| Sbjct: 111894 tgcttctgcacgctccacctccaggaccaccc 111925
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 46.1 bits (23), Expect = 0.067 Identities = 23/23 (100%) Strand = Plus / Plus Query: 265 cgacgtggcgcgcgccgccgccg 287 ||||||||||||||||||||||| Sbjct: 1713631 cgacgtggcgcgcgccgccgccg 1713653
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 46.1 bits (23), Expect = 0.067 Identities = 23/23 (100%) Strand = Plus / Plus Query: 265 cgacgtggcgcgcgccgccgccg 287 ||||||||||||||||||||||| Sbjct: 3048483 cgacgtggcgcgcgccgccgccg 3048505
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 46.1 bits (23), Expect = 0.067 Identities = 23/23 (100%) Strand = Plus / Plus Query: 265 cgacgtggcgcgcgccgccgccg 287 ||||||||||||||||||||||| Sbjct: 2197125 cgacgtggcgcgcgccgccgccg 2197147
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 46.1 bits (23), Expect = 0.067 Identities = 23/23 (100%) Strand = Plus / Plus Query: 265 cgacgtggcgcgcgccgccgccg 287 ||||||||||||||||||||||| Sbjct: 2815910 cgacgtggcgcgcgccgccgccg 2815932
>gb|AC124412.3| Mus musculus BAC clone RP24-274J3 from chromosome 9, complete sequence Length = 175945 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 ccacccttcctccctctcccgc 49 |||||||||||||||||||||| Sbjct: 75878 ccacccttcctccctctcccgc 75857
>gb|AC113106.9| Mus musculus chromosome 9, clone RP23-325C1, complete sequence Length = 191609 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 ccacccttcctccctctcccgc 49 |||||||||||||||||||||| Sbjct: 150287 ccacccttcctccctctcccgc 150266
>gb|CP000135.1| Rhizobium etli CFN 42 plasmid p42b, complete sequence Length = 184338 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 ggcggcggcgaccccgtcgtga 116 |||||||||||||||||||||| Sbjct: 61380 ggcggcggcgaccccgtcgtga 61401
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.26 Identities = 31/34 (91%) Strand = Plus / Minus Query: 259 ggccgtcgacgtggcgcgcgccgccgccggggag 292 |||||||||| | |||||||||||||||| |||| Sbjct: 4822055 ggccgtcgacctcgcgcgcgccgccgccgaggag 4822022
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.26 Identities = 31/34 (91%) Strand = Plus / Minus Query: 157 ccccgccgagctcgtcgtgaccgtgcacgcgggc 190 |||||||||||||||||| |||| || ||||||| Sbjct: 1442702 ccccgccgagctcgtcgtcaccgcgcgcgcgggc 1442669
>dbj|AB081806.1| Streptomyces griseus chi II gene for chitinase II, partial cds Length = 2299 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 cggcggcgaccccgtcgtgatc 118 |||||||||||||||||||||| Sbjct: 771 cggcggcgaccccgtcgtgatc 792
>ref|XM_474010.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 387 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 276 gcgccgccgccggggagaccg 296 ||||||||||||||||||||| Sbjct: 101 gcgccgccgccggggagaccg 121
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 266 gacgtggcgcgcgccgccgcc 286 ||||||||||||||||||||| Sbjct: 3491426 gacgtggcgcgcgccgccgcc 3491406
>emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L09, complete sequence Length = 159502 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 gcgccgccgccggggagaccg 296 ||||||||||||||||||||| Sbjct: 39098 gcgccgccgccggggagaccg 39078
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 gcgccgccgccggggagaccg 296 ||||||||||||||||||||| Sbjct: 32269515 gcgccgccgccggggagaccg 32269495
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 277 cgccgccgccggggagaccgt 297 ||||||||||||||||||||| Sbjct: 1985835 cgccgccgccggggagaccgt 1985815 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 ggcgcgcgccgccgccgggg 290 |||||||||||||||||||| Sbjct: 2403297 ggcgcgcgccgccgccgggg 2403278 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 gtggcgcgcgccgccgccggggag 292 ||||||||||| |||||||||||| Sbjct: 1804062 gtggcgcgcgcggccgccggggag 1804085
>emb|AL732333.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0613A10, complete sequence Length = 77572 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 gcgccgccgccggggagaccg 296 ||||||||||||||||||||| Sbjct: 35488 gcgccgccgccggggagaccg 35468
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 cgtggccgtcgacgtggcgcg 276 ||||||||||||||||||||| Sbjct: 2235913 cgtggccgtcgacgtggcgcg 2235893 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 cgtggccgtcgacgtggcgcg 276 ||||||||||||||||||||| Sbjct: 2235833 cgtggccgtcgacgtggcgcg 2235813
>gb|AC111115.13| Mus musculus chromosome 5, clone RP23-213H20, complete sequence Length = 201694 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ccaggaccacccttcctccc 41 |||||||||||||||||||| Sbjct: 139619 ccaggaccacccttcctccc 139638
>ref|XM_468436.1| Oryza sativa (japonica cultivar-group), mRNA Length = 931 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cgacgtcgccgccgtgcaga 143 |||||||||||||||||||| Sbjct: 642 cgacgtcgccgccgtgcaga 661
>ref|XM_507056.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1202_E07.33 mRNA Length = 1002 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cgacgtcgccgccgtgcaga 143 |||||||||||||||||||| Sbjct: 649 cgacgtcgccgccgtgcaga 668
>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01, complete sequence Length = 173074 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 cctcccttccggggccggcggcgg 102 |||||||||| ||||||||||||| Sbjct: 17572 cctcccttcccgggccggcggcgg 17595
>gb|AC145324.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026D03 map near S2137, complete sequence Length = 115141 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 cacccttcctccctctcccg 48 |||||||||||||||||||| Sbjct: 54179 cacccttcctccctctcccg 54160
>gb|AC134933.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0579A05, complete sequence Length = 107407 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 cctcccttccggggccggcggcgg 102 |||||||||| ||||||||||||| Sbjct: 79417 cctcccttcccgggccggcggcgg 79440
>ref|XM_583484.2| PREDICTED: Bos taurus similar to CG31320-PA (LOC506957), mRNA Length = 3018 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 ggaaggtgcgcgtggccgtc 265 |||||||||||||||||||| Sbjct: 194 ggaaggtgcgcgtggccgtc 213
>gb|DQ490965.1| Mutant Zea mays clone pGR25C22 disrupted DOF1 (Dof1) gene, promoter region and complete cds Length = 12502 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 8323 tccggggccggcggcggcga 8342 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 4560 tccggggccggcggcggcga 4579
>gb|AC044804.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-15K8, complete sequence Length = 253000 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ggaccacccttcctccctct 44 |||||||||||||||||||| Sbjct: 96599 ggaccacccttcctccctct 96580
>gb|AF130250.1| Wautersia eutropha hypothetical protein (macR') gene, partial cds; hypothetical protein (macB), maleylacetate reductase (macA), and hypothetical proteins genes, complete cds; and hypothetical protein gene, partial cds Length = 5861 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 cgtcgacgtggcgcgcgccg 281 |||||||||||||||||||| Sbjct: 709 cgtcgacgtggcgcgcgccg 690
>gb|BC020007.1| Mus musculus ubiquitin specific peptdiase 1, mRNA (cDNA clone MGC:25559 IMAGE:3980469), complete cds Length = 3437 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gcgccgccgccggggagacc 295 |||||||||||||||||||| Sbjct: 240 gcgccgccgccggggagacc 221
>gb|BC018179.1| Mus musculus ubiquitin specific peptdiase 1, mRNA (cDNA clone MGC:25528 IMAGE:3585191), complete cds Length = 3465 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gcgccgccgccggggagacc 295 |||||||||||||||||||| Sbjct: 287 gcgccgccgccggggagacc 268
>gb|BC092574.1| Rattus norvegicus ubiquitin specific peptdiase 1, mRNA (cDNA clone MGC:108773 IMAGE:7113947), complete cds Length = 3563 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gcgccgccgccggggagacc 295 |||||||||||||||||||| Sbjct: 354 gcgccgccgccggggagacc 335
>ref|NM_001015015.1| Rattus norvegicus ubiquitin specific peptdiase 1 (Usp1), mRNA Length = 3563 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gcgccgccgccggggagacc 295 |||||||||||||||||||| Sbjct: 354 gcgccgccgccggggagacc 335
>gb|AC127173.17| Mus musculus strain C57BL/6J clone rp23-39k4 map 10, complete sequence Length = 228883 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ccacccttcctccctctccc 47 |||||||||||||||||||| Sbjct: 150757 ccacccttcctccctctccc 150776
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 cgcgccgccgccggggagaccgtg 298 |||||||||||||||||| ||||| Sbjct: 1806887 cgcgccgccgccggggagcccgtg 1806910
>gb|AY301066.1| Transposition vector RescueMu, complete sequence Length = 4739 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 4287 tccggggccggcggcggcga 4268 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 524 tccggggccggcggcggcga 505
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 ccggctgcggcgtgggcgccagcc 236 |||||||||||| ||||||||||| Sbjct: 295108 ccggctgcggcgcgggcgccagcc 295085
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 ccggctgcggcgtgggcgccagcc 236 |||||||||||| ||||||||||| Sbjct: 299761 ccggctgcggcgcgggcgccagcc 299738
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 ccggctgcggcgtgggcgccagcc 236 |||||||||||| ||||||||||| Sbjct: 260081 ccggctgcggcgcgggcgccagcc 260058
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cggcggcggcgaccccgtcg 113 |||||||||||||||||||| Sbjct: 248779 cggcggcggcgaccccgtcg 248798
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 agcaccggctgcggcgtggg 228 |||||||||||||||||||| Sbjct: 106143 agcaccggctgcggcgtggg 106162
>emb|Y00603.1|ZMTNMU17 Zea mays transposable element Mu1.7 Length = 1754 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 917 tccggggccggcggcggcga 898 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 516 tccggggccggcggcggcga 497
>emb|X13019.1|ZMTNMU14 Maize Mu-homologous element Mu1.4.-B37 Length = 1396 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 935 tccggggccggcggcggcga 916 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 533 tccggggccggcggcggcga 514
>emb|X00913.1|ZMTEMU1 Maize transposable element Mu1 sequence Length = 1400 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 937 tccggggccggcggcggcga 918 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 535 tccggggccggcggcggcga 516
>gb|AF347696.1| Zea mays NADPH-dependent reductase (a1) gene, a1-mum2 allele, complete cds Length = 8154 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 4818 tccggggccggcggcggcga 4837 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 4416 tccggggccggcggcggcga 4435
>gb|AC108080.2| Homo sapiens chromosome 5 clone CTC-315N8, complete sequence Length = 160494 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ctgcacgctccacctccagg 26 |||||||||||||||||||| Sbjct: 67673 ctgcacgctccacctccagg 67692
>gb|AC011404.6| Homo sapiens chromosome 5 clone CTB-43P18, complete sequence Length = 123931 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ctgcacgctccacctccagg 26 |||||||||||||||||||| Sbjct: 99221 ctgcacgctccacctccagg 99240
>emb|AJ580352.1|PSP580352 Paracoccus sp. BOG6 partial 16S rRNA gene, isolate BOG6 Length = 1385 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ccgcctgcctcccttccggg 91 |||||||||||||||||||| Sbjct: 1361 ccgcctgcctcccttccggg 1342
>emb|AJ532552.1|LTE532552 Lolium temulentum partial inv1:2 gene for putative soluble acid invertase, exons 1-3 Length = 1381 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 cgcgtggccgtcgacgtggc 273 |||||||||||||||||||| Sbjct: 210 cgcgtggccgtcgacgtggc 229
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 95 ggcggcggcgaccccgtcgtgatc 118 ||||||||||||| |||||||||| Sbjct: 2548402 ggcggcggcgaccgcgtcgtgatc 2548379
>gb|AC159299.2| Mus musculus BAC clone RP23-241K11 from chromosome 6, complete sequence Length = 207837 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ggaccacccttcctccctct 44 |||||||||||||||||||| Sbjct: 59473 ggaccacccttcctccctct 59454
>dbj|AK080882.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430116N19 product:UBIQUITIN-SPECIFIC PROTEASE homolog [Homo sapiens], full insert sequence Length = 3568 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gcgccgccgccggggagacc 295 |||||||||||||||||||| Sbjct: 408 gcgccgccgccggggagacc 389
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccggggccggcggcggcgac 106 |||||||||||||||||||| Sbjct: 643083 ccggggccggcggcggcgac 643064
>gb|AC159326.9| Mus musculus 10 BAC RP23-451H6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 230689 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ccacccttcctccctctccc 47 |||||||||||||||||||| Sbjct: 55278 ccacccttcctccctctccc 55297
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 cacccttcctccctctcccg 48 |||||||||||||||||||| Sbjct: 8278221 cacccttcctccctctcccg 8278240
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 145 gctctcgggccgccccgccgagctcgtc 172 |||| |||||| |||||||||||||||| Sbjct: 6714847 gctcccgggcctccccgccgagctcgtc 6714820
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 cctcccttccggggccggcggcgg 102 |||||||||| ||||||||||||| Sbjct: 20345827 cctcccttcccgggccggcggcgg 20345850
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cgacgtcgccgccgtgcaga 143 |||||||||||||||||||| Sbjct: 35246349 cgacgtcgccgccgtgcaga 35246330
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 tcgacgtcgccgccgtgcag 142 |||||||||||||||||||| Sbjct: 2030898 tcgacgtcgccgccgtgcag 2030917
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 145 gctctcgggccgccccgccgagctcgtc 172 |||| |||||| |||||||||||||||| Sbjct: 148973 gctcccgggcctccccgccgagctcgtc 148946
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 145 gctctcgggccgccccgccgagctcgtc 172 |||| |||||| |||||||||||||||| Sbjct: 44526 gctcccgggcctccccgccgagctcgtc 44499
>emb|BX649611.8| Mouse DNA sequence from clone RP23-445E3 on chromosome 4, complete sequence Length = 41425 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 ccagtccaaggggagcacga 209 |||||||||||||||||||| Sbjct: 9515 ccagtccaaggggagcacga 9534
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cgacgtcgccgccgtgcaga 143 |||||||||||||||||||| Sbjct: 58399 cgacgtcgccgccgtgcaga 58380
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cgacgtcgccgccgtgcaga 143 |||||||||||||||||||| Sbjct: 141705 cgacgtcgccgccgtgcaga 141686
>dbj|AK103441.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129D12, full insert sequence Length = 930 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cgacgtcgccgccgtgcaga 143 |||||||||||||||||||| Sbjct: 641 cgacgtcgccgccgtgcaga 660
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ggtgcgcgtggccgtcgacg 269 |||||||||||||||||||| Sbjct: 3317087 ggtgcgcgtggccgtcgacg 3317106
>dbj|AK064187.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-C02, full insert sequence Length = 1002 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cgacgtcgccgccgtgcaga 143 |||||||||||||||||||| Sbjct: 649 cgacgtcgccgccgtgcaga 668
>emb|X54992.1|ZMTRELMU1 Z.mays transposable element Mu1 Length = 576 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 513 tccggggccggcggcggcga 494 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 111 tccggggccggcggcggcga 92
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 ccggggccggcggcggcgaccccg 110 ||||| |||||||||||||||||| Sbjct: 1814118 ccgggtccggcggcggcgaccccg 1814095
>gb|AF006498.1|AF006498 Zea mays discolored-1 (mutant allele dsc1-Ref::Mu1) gene, partial sequence Length = 3808 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 1408 tccggggccggcggcggcga 1389 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 1006 tccggggccggcggcggcga 987
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 cacccttcctccctctcccg 48 |||||||||||||||||||| Sbjct: 8348984 cacccttcctccctctcccg 8349003
>ref|NM_146144.2| Mus musculus ubiquitin specific peptdiase 1 (Usp1), mRNA Length = 3568 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gcgccgccgccggggagacc 295 |||||||||||||||||||| Sbjct: 408 gcgccgccgccggggagacc 389
>gb|M22076.1|MZETNMUT Maize Mu transposable element MRS-A Length = 1557 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tccggggccggcggcggcga 105 |||||||||||||||||||| Sbjct: 723 tccggggccggcggcggcga 704
>emb|AL627349.8| Mouse DNA sequence from clone RP23-329P19 on chromosome 4, complete sequence Length = 107898 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gcgccgccgccggggagacc 295 |||||||||||||||||||| Sbjct: 60369 gcgccgccgccggggagacc 60350 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,427,971 Number of Sequences: 3902068 Number of extensions: 3427971 Number of successful extensions: 95915 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90998 Number of HSP's gapped (non-prelim): 4914 length of query: 314 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 292 effective length of database: 17,147,199,772 effective search space: 5006982333424 effective search space used: 5006982333424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)