>CTNS_ARATH (P57758) Cystinosin homolog|
          Length = 270

 Score =  157 bits (396), Expect(2) = 1e-55
 Identities = 71/113 (62%), Positives = 85/113 (75%)
 Frame = +3

Query: 234 GSELRFSVLNFTKHSSYLIYNAALFFSPFIQKQYHDKFGDKEMIPVAANDVAFSLHAVAL 413
           G    F +LN TKHSSY+IYN  L+FSP IQKQY D +GDKEMIPVAANDVAFS+HAV +
Sbjct: 43  GLNFDFVMLNLTKHSSYMIYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVM 102

Query: 414 TSFTLYQVFIYERGQQKVSKVCISITAVVWSAAIVCLIVAWPKSDWLWLIDVF 572
           T+ TL+Q+FIYERG QKVS++ I I  VVW  A +C  +A P   WLWLI +F
Sbjct: 103 TAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIF 155



 Score = 79.3 bits (194), Expect(2) = 1e-55
 Identities = 30/48 (62%), Positives = 43/48 (89%)
 Frame = +1

Query: 112 SSWNSVGLGVLYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFL 255
           +SWNS+ L + Y+++GW+AF +WS SFYPQ++LN+RR+SVVGLNFDF+
Sbjct: 2   ASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFV 49

>CTNS_HUMAN (O60931) Cystinosin|
          Length = 367

 Score = 70.9 bits (172), Expect(2) = 2e-26
 Identities = 40/100 (40%), Positives = 57/100 (57%)
 Frame = +3

Query: 234 GSELRFSVLNFTKHSSYLIYNAALFFSPFIQKQYHDKFGDKEMIPVAANDVAFSLHAVAL 413
           G    F  LN T   +Y ++N  L + P+I++Q+  K+ +  + PV +NDV FSLHAV L
Sbjct: 157 GLSFDFVALNLTGFVAYSVFNIGLLWVPYIKEQFLLKYPNG-VNPVNSNDVFFSLHAVVL 215

Query: 414 TSFTLYQVFIYERGQQKVSKVCISITAVVWSAAIVCLIVA 533
           T   + Q  +YERG Q+VS   I    + W  A V +IVA
Sbjct: 216 TLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVA 255



 Score = 67.8 bits (164), Expect(2) = 2e-26
 Identities = 27/44 (61%), Positives = 37/44 (84%)
 Frame = +1

Query: 124 SVGLGVLYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFL 255
           S  + ++ QVIGW+ F AWS SFYPQV++N+RRKSV+GL+FDF+
Sbjct: 120 SSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFV 163

>CTNS_MOUSE (P57757) Cystinosin|
          Length = 367

 Score = 71.2 bits (173), Expect(2) = 4e-26
 Identities = 39/100 (39%), Positives = 57/100 (57%)
 Frame = +3

Query: 234 GSELRFSVLNFTKHSSYLIYNAALFFSPFIQKQYHDKFGDKEMIPVAANDVAFSLHAVAL 413
           G    F  LN T   +Y ++N  L + P+IQ+++  K+ +  + PV +ND  FSLHAVAL
Sbjct: 157 GLSFDFLALNLTGFVAYSVFNIGLLWVPYIQEEFLLKYPNG-VNPVDSNDAFFSLHAVAL 215

Query: 414 TSFTLYQVFIYERGQQKVSKVCISITAVVWSAAIVCLIVA 533
           T   + Q  +YERG Q+VS   I    + W   +V +IVA
Sbjct: 216 TLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVA 255



 Score = 66.2 bits (160), Expect(2) = 4e-26
 Identities = 27/41 (65%), Positives = 35/41 (85%)
 Frame = +1

Query: 133 LGVLYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFL 255
           + ++ QVIGW+ F AWS SFYPQV+ N+RRKSV+GL+FDFL
Sbjct: 123 VSIINQVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFL 163

>CTNS_CAEEL (Q09500) Cystinosin homolog|
          Length = 404

 Score = 70.5 bits (171), Expect(2) = 7e-22
 Identities = 29/41 (70%), Positives = 35/41 (85%)
 Frame = +1

Query: 133 LGVLYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFL 255
           L +L Q++GW  FFAWS SFYPQ+ LN++RKSVVGLNFDFL
Sbjct: 125 LAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFL 165



 Score = 52.8 bits (125), Expect(2) = 7e-22
 Identities = 28/91 (30%), Positives = 45/91 (49%)
 Frame = +3

Query: 234 GSELRFSVLNFTKHSSYLIYNAALFFSPFIQKQYHDKFGDKEMIPVAANDVAFSLHAVAL 413
           G    F  LN     +Y I+N  ++++  ++ +Y+     +   PV  NDV F++HA   
Sbjct: 159 GLNFDFLSLNLVGFCAYAIFNLLMYYNSHVKNEYNI-VNPRSPPPVLLNDVVFAVHAFLA 217

Query: 414 TSFTLYQVFIYERGQQKVSKVCISITAVVWS 506
              T+ Q   YER  Q VS  CI++  V+ S
Sbjct: 218 CFITILQCLFYERDNQSVSSKCIALMIVLIS 248

>CTNS_DROME (Q9VCR7) Cystinosin homolog|
          Length = 397

 Score = 60.8 bits (146), Expect(2) = 3e-21
 Identities = 33/95 (34%), Positives = 49/95 (51%)
 Frame = +3

Query: 234 GSELRFSVLNFTKHSSYLIYNAALFFSPFIQKQYHDKFGDKEMIPVAANDVAFSLHAVAL 413
           G    F  LN    + Y ++N  L+F   +Q +Y  ++    + PV  NDV FSLHA+  
Sbjct: 162 GLNFDFLALNIVGFTLYSMFNCGLYFIEDLQNEYEVRY-PLGVNPVMLNDVVFSLHAMFA 220

Query: 414 TSFTLYQVFIYERGQQKVSKVCISITAVVWSAAIV 518
           T  T+ Q F Y+R QQ+VS +   I A+     +V
Sbjct: 221 TCITILQCFFYQRAQQRVSFIAYGILAIFAVVVVV 255



 Score = 60.1 bits (144), Expect(2) = 3e-21
 Identities = 26/35 (74%), Positives = 28/35 (80%)
 Frame = +1

Query: 151 VIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFL 255
           + GWV F AWS SFYPQ+  NYRRKSV GLNFDFL
Sbjct: 134 IFGWVYFVAWSVSFYPQIWSNYRRKSVEGLNFDFL 168

>ERS1_YEAST (P17261) Transmembrane protein ERS1 (ERD suppressor)|
          Length = 260

 Score = 36.2 bits (82), Expect = 0.069
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 142 LYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFL 255
           L  ++G V   +WS S YP ++ N+R KS   ++ DF+
Sbjct: 4   LDDILGIVYVTSWSISMYPPIITNWRHKSASAISMDFV 41

>YO092_YEAST (Q12010) Uncharacterized protein YOL092W|
          Length = 308

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 88  TPPPPAMSSSWNSVGLGV--LYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDF 252
           T PPP    S     L +  + Q+ G+++   +  S  PQ++LN++RKS  G++F F
Sbjct: 191 TQPPPVEDPSLPVPELQINWMAQIFGYLSALLYLGSRIPQILLNFKRKSCEGISFLF 247

>YBZ7_YEAST (P38279) Hypothetical 33.5 kDa protein in MRPS9-YSW1 intergenic|
           region
          Length = 296

 Score = 33.5 bits (75), Expect = 0.45
 Identities = 14/35 (40%), Positives = 25/35 (71%)
 Frame = +1

Query: 148 QVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDF 252
           Q++G+++   +  S  PQ+VLN++RKS  G++F F
Sbjct: 209 QILGYLSAILYLGSRIPQIVLNFKRKSCEGVSFLF 243



 Score = 29.3 bits (64), Expect = 8.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 157 GWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFL 255
           G ++   W   F PQ+  N+RR+S  GL+  F+
Sbjct: 18  GSISICCWIVVFVPQIYENFRRQSAEGLSLLFI 50

>YD03_SCHPO (Q10227) Hypothetical protein C2E12.03c in chromosome I|
          Length = 283

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 142 LYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLC*ISQSTLPTS 288
           ++ ++G V    W     PQ++ NYR KS  GL+  F+     +++P S
Sbjct: 21  VFAILGTVC---WCVQLIPQIIKNYRAKSTEGLDTLFILSWVVASIPLS 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,411,571
Number of Sequences: 219361
Number of extensions: 1241940
Number of successful extensions: 3097
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3095
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)