ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart24h06 |
|---|---|
| Clone Library Name | barley_pub |
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 105 bits (261), Expect = 1e-22 Identities = 61/161 (37%), Positives = 83/161 (51%), Gaps = 3/161 (1%) Frame = +1 Query: 121 VVLPVRKDSATGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDAGYVSSSYAGVPCASKL 300 VVLPV+ D +TG + ++RTP + V ++DL G LWV+C+ Y S +Y C S Sbjct: 34 VVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQ 93 Query: 301 CRLAKSVACATSCVGKPSPGCLNDTCSGFPENTVTRVSTGGNLITDVLSVPTTFRPAP-- 474 C A + C SC PGC +TC N +T+ + G L DVL++ T Sbjct: 94 CSRANTHQC-LSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQL 152 Query: 475 GPLATAPAFLFTCGATFLTD-GLAAGATGMASLSRARFALP 594 GPL T P FLF+C +FL GL G+A L A +LP Sbjct: 153 GPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLP 193
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 103 bits (257), Expect = 4e-22 Identities = 60/161 (37%), Positives = 84/161 (52%), Gaps = 3/161 (1%) Frame = +1 Query: 121 VVLPVRKDSATGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDAGYVSSSYAGVPCASKL 300 +VLPV+ D++TG + ++RTP + V ++DL G LWV+C+ Y S +Y C S Sbjct: 41 LVLPVQNDASTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQHYSSKTYQAPFCHSTQ 100 Query: 301 CRLAKSVACATSCVGKPSPGCLNDTCSGFPENTVTRVSTGGNLITDVLSVPTTFRPAP-- 474 C A + C SC PGC +TC N +T+ + G L DVL++ T Sbjct: 101 CSRANTHQC-LSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGQDVLAIHATQGSTQQL 159 Query: 475 GPLATAPAFLFTCGATFLTD-GLAAGATGMASLSRARFALP 594 GPL T P FLF+C +FL GL G+A L A +LP Sbjct: 160 GPLVTVPQFLFSCAPSFLLQKGLPRNIQGVAGLGHAPISLP 200
>NEP1_NEPGR (Q766C3) Aspartic proteinase nepenthesin-1 precursor (EC 3.4.23.-)| (Nepenthesin-I) Length = 437 Score = 48.9 bits (115), Expect = 1e-05 Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 16/179 (8%) Frame = +1 Query: 106 NNPSAVVLPVRKDSATGQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDA----------- 252 N PS V V + G+YL TP P +A++D G +W C Sbjct: 79 NGPSGVETSVY--AGDGEYLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPI 136 Query: 253 --GYVSSSYAGVPCASKLCRLAKSVACATSCVGKPSPGCLNDTCS---GFPENTVTRVST 417 SSS++ +PC+S+LC+ SP C N+ C G+ + + T+ S Sbjct: 137 FNPQGSSSFSTLPCSSQLCQALS------------SPTCSNNFCQYTYGYGDGSETQGSM 184 Query: 418 GGNLITDVLSVPTTFRPAPGPLATAPAFLFTCGATFLTDGLAAGATGMASLSRARFALP 594 G T+ L+ + + P F CG G GA G+ + R +LP Sbjct: 185 G----TETLTFGS---------VSIPNITFGCGENNQGFGQGNGA-GLVGMGRGPLSLP 229
>NEP2_NEPGR (Q766C2) Aspartic proteinase nepenthesin-2 precursor (EC 3.4.23.-)| (Nepenthesin-II) Length = 438 Score = 38.5 bits (88), Expect = 0.015 Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 16/163 (9%) Frame = +1 Query: 154 GQYLTGFRQRTPQVPVTAVLDLGGASLWVDCDA-------------GYVSSSYAGVPCAS 294 G+YL TP +A++D G +W C+ SSS++ +PC S Sbjct: 94 GEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPCES 153 Query: 295 KLCRLAKSVACATSCVGKPSPGCLNDTCS---GFPENTVTRVSTGGNLITDVLSVPTTFR 465 + C+ PS C N+ C G+ + + T+ G + T+ + T Sbjct: 154 QYCQ------------DLPSETCNNNECQYTYGYGDGSTTQ----GYMATETFTFET--- 194 Query: 466 PAPGPLATAPAFLFTCGATFLTDGLAAGATGMASLSRARFALP 594 ++ P F CG G GA G+ + +LP Sbjct: 195 ------SSVPNIAFGCGEDNQGFGQGNGA-GLIGMGWGPLSLP 230
>TLE4_MOUSE (Q62441) Transducin-like enhancer protein 4 (Groucho-related| protein 4) (Grg-4) Length = 766 Score = 34.3 bits (77), Expect = 0.28 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Frame = -3 Query: 593 GSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRK-VVGTDSTSVMRFPP 417 G A ++ + AA + N++P ++ A A A+ GR VVG D MR P Sbjct: 368 GIVPHAGMNGELTSPGAAYAGLHNISPQMSAAAAAAAAAAAYGRSPVVGFDPHHHMRVPA 427 Query: 416 VLTRVTVFSGNPLQVSFRHPGDG 348 + +T G SF DG Sbjct: 428 IPPNLTGIPGGKPAYSFHVSADG 450
>TLE4_HUMAN (Q04727) Transducin-like enhancer protein 4| Length = 766 Score = 34.3 bits (77), Expect = 0.28 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Frame = -3 Query: 593 GSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRK-VVGTDSTSVMRFPP 417 G A ++ + AA + N++P ++ A A A+ GR VVG D MR P Sbjct: 368 GIVPHAGMNGELTSPGAAYAGLHNISPQMSAAAAAAAAAAAYGRSPVVGFDPHHHMRVPA 427 Query: 416 VLTRVTVFSGNPLQVSFRHPGDG 348 + +T G SF DG Sbjct: 428 IPPNLTGIPGGKPAYSFHVSADG 450
>TLE4_RAT (Q07141) Transducin-like enhancer protein 4 (ESP2 protein)| Length = 741 Score = 34.3 bits (77), Expect = 0.28 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Frame = -3 Query: 593 GSANRARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRK-VVGTDSTSVMRFPP 417 G A ++ + AA + N++P ++ A A A+ GR VVG D MR P Sbjct: 343 GIVPHAGMNGELTSPGAAYAGLHNISPQMSAAAAAAAAAAAYGRSPVVGFDPHHHMRVPA 402 Query: 416 VLTRVTVFSGNPLQVSFRHPGDG 348 + +T G SF DG Sbjct: 403 IPPNLTGIPGGKPAYSFHVSADG 425
>ESR1_FELCA (Q53AD2) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 595 Score = 32.7 bits (73), Expect = 0.81 Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 14/138 (10%) Frame = -3 Query: 500 NAGAVASGP---------GAGRKVVGTDSTSVMRFPP---VLTRVTVFSGNPLQVS-FRH 360 NA A AS P G+G + + + FPP V V P Q+S F H Sbjct: 63 NAAAAASAPVYGQSGLAYGSGSEAAAFGANGLGGFPPLNSVSPSPLVLLHPPPQLSPFLH 122 Query: 359 P-GDGLPTQLVAQATLFARRHSLDAHGTPA*DEDTYPASQSTQSEAPPRSSTAVTGTWGV 183 P G +P L + + +A R + G PA T + QS +ST G+ + Sbjct: 123 PHGQQVPYYLENEPSGYAVREA----GPPAFYRPT--SDNRRQSGRERLASTGDKGSMAM 176 Query: 182 RCRKPVRYCPVALSFLTG 129 K RYC V + +G Sbjct: 177 ESAKETRYCAVCNDYASG 194
>IRX5_MOUSE (Q9JKQ4) Iroquois-class homeodomain protein IRX-5 (Iroquois| homeobox protein 5) (Homeodomain protein IRXB2) Length = 484 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/53 (28%), Positives = 22/53 (41%) Frame = -3 Query: 575 RLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVVGTDSTSVMRFPP 417 R ++ P PA + PH + A P AG G+ +SV+ PP Sbjct: 268 RAGESSPAGPATARLAEDAGPHYPASVPAPGPHPSAGELPPGSGGSSVIHSPP 320
>ATPG_BRAJA (Q89X73) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 290 Score = 30.8 bits (68), Expect = 3.1 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = -3 Query: 578 ARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVVGTDSTSV 432 ++L A A AARP ++ ++ AGA A PGA + GT V Sbjct: 30 SKLRRAQTAAEAARPYADKMSAVISNIAGAAAGSPGAPALLAGTGRDQV 78
>IRX5_HUMAN (P78411) Iroquois-class homeodomain protein IRX-5 (Iroquois| homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A) Length = 482 Score = 30.8 bits (68), Expect = 3.1 Identities = 18/53 (33%), Positives = 20/53 (37%) Frame = -3 Query: 575 RLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVVGTDSTSVMRFPP 417 R P PAA + APH A A P AG G SV+ PP Sbjct: 268 RTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPP 320
>MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 2158 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = -2 Query: 315 LREAAQLXXXXXXXXXXXXVPGVAVHPE---RGASKVEHGRHRDLGRSLPEARQVLP 154 LREA +L PG HPE RGAS +RDL + ++ + LP Sbjct: 698 LREAGRLRAERAEKAAGMSSPGAQSHPEELPRGASTPSEKLYRDLHNQMIKSIKGLP 754
>ATPG_RHOCA (P72246) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 290 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = -3 Query: 578 ARLSDAMPVAPAARPSVRNVAPHVNRNAGAVASGPGAGRKVVGTDSTSV 432 A + A A AARP + ++ AGAV S GA R + GT S V Sbjct: 30 ANIRRAQESAEAARPYAERMNAVMSSLAGAVGSTDGAPRLLAGTGSDKV 78
>DISA_TRIGA (P15503) Putative venom metalloproteinase precursor (EC 3.4.24.-)| [Contains: Disintegrin trigramin-alpha (Platelet aggregation activation inhibitor)] Length = 480 Score = 29.6 bits (65), Expect = 6.9 Identities = 20/63 (31%), Positives = 25/63 (39%) Frame = +1 Query: 241 DCDAGYVSSSYAGVPCASKLCRLAKSVACATSCVGKPSPGCLNDTCSGFPENTVTRVSTG 420 DCD G S A C + C+L C G D CS E TV R++ G Sbjct: 412 DCDCG----SPANPCCDAATCKLIPGAQCGE--------GLCCDQCSFIEEGTVCRIARG 459 Query: 421 GNL 429 +L Sbjct: 460 DDL 462
>SURE_PSEAE (Q9HY05) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 249 Score = 29.6 bits (65), Expect = 6.9 Identities = 20/59 (33%), Positives = 26/59 (44%) Frame = +1 Query: 364 LNDTCSGFPENTVTRVSTGGNLITDVLSVPTTFRPAPGPLATAPAFLFTCGATFLTDGL 540 LN P+ V+ ++ G NL DVL T G PAF F+ + LTD L Sbjct: 75 LNGLLEELPDMVVSGINLGANLGDDVLYSGTVAAAIEGRFLKGPAFAFSL-VSRLTDNL 132
>YAG1_SCHPO (Q09866) Hypothetical WD-repeat protein C12G12.01c in chromosome I| Length = 905 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -2 Query: 234 ERGASKVEHGRHRDLGRSLPEARQVLPRCAV 142 +RG SK +H LG+S P Q LP+C+V Sbjct: 802 QRGVSKAGPAKH--LGKSCPHCGQPLPKCSV 830
>STAN_DROME (Q9V5N8) Protocadherin-like wing polarity protein stan precursor| (Protein starry night) (Protein flamingo) Length = 3574 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%) Frame = +1 Query: 241 DCDAGYVSSSYAGV----PCASKLCRLAKSVACATSC 339 +CD+GYV + A + PCAS +CR S+ C Sbjct: 1989 ECDSGYVGTDCAPICTVRPCASGVCRANTSLPRGYDC 2025
>EMR2_HUMAN (Q9UHX3) EGF-like module-containing mucin-like hormone| receptor-like 2 precursor (EGF-like module EMR2) (CD312 antigen) Length = 823 Score = 29.6 bits (65), Expect = 6.9 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Frame = +1 Query: 349 PSPGCLNDTCSGFPENTVT-----RVSTGGNLITDVLSVPTTFRPAPGPLATAPAFLFTC 513 P PG + T S F + + N I +L APG L T P C Sbjct: 269 PPPGVHSQTLSRFFDKVQDLGRDYKPGLANNTIQSILQALDELLEAPGDLETLPRLQQHC 328 Query: 514 GATFLTDGLAAGATGMA 564 A+ L DGL G++ Sbjct: 329 VASHLLDGLEDVLRGLS 345
>RL10_HALSA (Q9HSS4) 50S ribosomal protein L10e| Length = 176 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = +3 Query: 306 PREECGLRHQLRRQAVPGVSERHL*RVPGEHRHARQHRREPH 431 P+EEC LRH +A + RHL + GE + Q R+ PH Sbjct: 54 PQEECQLRHG-SLEAARLSANRHLIKELGEGNYKMQLRKFPH 94
>CARPV_CANAL (P10977) Vacuolar aspartic protease precursor (EC 3.4.23.-)| (Aspartate protease) (ACP) Length = 419 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = +1 Query: 157 QYLTGFRQRTPQVPVTAVLDLGGASLWV---DC 246 QY T + TP P +LD G ++LWV DC Sbjct: 103 QYFTEIQIGTPGQPFKVILDTGSSNLWVPSQDC 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,625,676 Number of Sequences: 219361 Number of extensions: 1149345 Number of successful extensions: 5158 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4759 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5141 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
