ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart24h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NLTP1_PHAAU (P83434) Nonspecific lipid-transfer protein 1 (LTP 1... 30 3.1
2UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquiti... 30 5.3
3PP2A2_ARATH (Q07099) Serine/threonine-protein phosphatase PP2A-2... 29 6.9
4NLTP2_ORYSA (Q42978) Nonspecific lipid-transfer protein 2 precur... 29 9.0
5NLTP1_PRUDO (P82534) Nonspecific lipid-transfer protein 1 (LTP 1... 29 9.0

>NLTP1_PHAAU (P83434) Nonspecific lipid-transfer protein 1 (LTP 1) (NS-LTP1)|
          Length = 91

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 298 ADLRCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTP 408
           AD R +CS   +   ++  I+P  A  LP KCG+  P
Sbjct: 42  ADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIP 78



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>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion|
           degradation protein 2) (Homozygously deleted in
           neuroblastoma 1)
          Length = 1302

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 4   PPQQPFHPSSTDDRPSSLRLARQ-QASSARSVW 99
           PP  P  PS+T  RPSSLR++    AS   S W
Sbjct: 377 PPLPPASPSATSRRPSSLRISPSLGASGGASNW 409



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>PP2A2_ARATH (Q07099) Serine/threonine-protein phosphatase PP2A-2 catalytic|
           subunit (EC 3.1.3.16)
          Length = 306

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 280 CATLGKADLRCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTPPDC*IQFHGM 438
           C  LG+AD++ LC    +  +  YN+        P KC +T   D   QF+ +
Sbjct: 17  CKPLGEADVKILCDQAKAILVEEYNVQ-------PVKCPVTVCGDIHGQFYDL 62



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>NLTP2_ORYSA (Q42978) Nonspecific lipid-transfer protein 2 precursor (LTP 2)|
          Length = 118

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
 Frame = +1

Query: 268 SEACC--------ATLGKADLRCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTP 408
           S ACC        A    AD R  C+   +   S+  ++   A  +P+KCG+T P
Sbjct: 51  SAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVTIP 105



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>NLTP1_PRUDO (P82534) Nonspecific lipid-transfer protein 1 (LTP 1) (Major|
           allergen Pru d 3)
          Length = 91

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 298 ADLRCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTP 408
           AD R  C+       S+  ++P  A  LP KCG+  P
Sbjct: 42  ADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVP 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,003,723
Number of Sequences: 219361
Number of extensions: 875126
Number of successful extensions: 2302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2302
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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