Clone Name | bart24g09 |
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Clone Library Name | barley_pub |
>TNNC_HALRO (P06706) Troponin C, body wall muscle| Length = 155 Score = 32.3 bits (72), Expect = 0.99 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Frame = +2 Query: 272 VGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGPHEVRCVQRNVLLQALED-ELP 448 + K G+ +++LG E+ E+D+ +G + E C+ +QA E+ ++P Sbjct: 28 ISSKELGKVMKMLGQNPTEKDLQEMIEEVDIDGSGTIDFEEF-CLMMYRQMQAQEEAKIP 86 Query: 449 PDTIRYSSKIVSIDDQDGDGDGAKILHLADGS 544 + S+ + D DGDG G ++ DG+ Sbjct: 87 EREEKELSEAFRLFDLDGDGIGDELKAALDGT 118
>MINC_PHOLL (Q7N522) Probable septum site-determining protein minC| Length = 227 Score = 30.8 bits (68), Expect = 2.9 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = +2 Query: 407 QRNVLLQALED--ELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLTGC 574 Q ++LQAL++ E PD ++ + +++I D D + H D + R ++GC Sbjct: 24 QPEIILQALQEKVEQAPDFLKNAPVVINISALPADADLKALHHAIDSAGFRIVGMSGC 81
>GIDA_STRT2 (Q5M250) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 633 Score = 30.4 bits (67), Expect = 3.8 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Frame = +2 Query: 251 RALDALGVGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGP----HEVRCVQRNV 418 R +DALG G+ + + ++++++ G R + + + L H V + Sbjct: 63 REIDALG-GEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLT 121 Query: 419 LLQALEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLTG 571 L Q++ DE+ + SK+V + GAK + + G+ LR +++ G Sbjct: 122 LRQSMVDEILVE----DSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIG 168
>GIDA_STRT1 (Q5LXK0) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 633 Score = 30.4 bits (67), Expect = 3.8 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Frame = +2 Query: 251 RALDALGVGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGP----HEVRCVQRNV 418 R +DALG G+ + + ++++++ G R + + + L H V + Sbjct: 63 REIDALG-GEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLT 121 Query: 419 LLQALEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLTG 571 L Q++ DE+ + SK+V + GAK + + G+ LR +++ G Sbjct: 122 LRQSMVDEILVE----DSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIG 168
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 30.0 bits (66), Expect = 4.9 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = +2 Query: 182 VVLESSPDRRTSGFAFFTWTNAFRALDALGV--GDKMRGRHLQL 307 VV++ +R+ GF F T+TN A DA+ G+ + GR +++ Sbjct: 36 VVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRV 79
>GIDA_MESFL (Q6F0E6) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 626 Score = 30.0 bits (66), Expect = 4.9 Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 1/108 (0%) Frame = +2 Query: 251 RALDALGVGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGK-LGPHEVRCVQRNVLLQ 427 R +DALG G+ + L ++++SS G + ++ + + + + V+ + LQ Sbjct: 59 REIDALG-GEMAKAADKTALQTKLLNSSRGPGVWALRVQSDKEEYSKYMQKIVEEQINLQ 117 Query: 428 ALEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLTG 571 +E + D I ++ + + +DG+ +K + L G+ L++++LTG Sbjct: 118 LIES-IATDLIIENNTVTGVLLKDGEILKSKCVVLTTGTYLKSEILTG 164
>NALP6_HUMAN (P59044) NACHT-, LRR- and PYD-containing protein 6| (PYRIN-containing APAF1-like protein 5) Length = 892 Score = 29.6 bits (65), Expect = 6.4 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = -3 Query: 358 HLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEGEAGRATVRRRLQHHA 179 H+ + R + + + ++ + L+ PE E +GP EE E GRA RR H Sbjct: 125 HVLQLHARVKERNARSVKITKRFTKLLIAPESAAPEEALGPAEEPEPGRA---RRSDTHT 181 Query: 178 PNAL 167 N L Sbjct: 182 FNRL 185
>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)| Length = 1138 Score = 29.3 bits (64), Expect = 8.4 Identities = 15/56 (26%), Positives = 25/56 (44%) Frame = -3 Query: 391 MGSQFSVHPEIHLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEG 224 MGS ++ + + F + H P Q+Q +PY + +R G GP +G Sbjct: 630 MGSGYTFPAGVSVPGTFLQSTAHSPAGNQVQAGKQSHIPYSQ--QRPSGPGPMNQG 683 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.132 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,418,622 Number of Sequences: 219361 Number of extensions: 1536017 Number of successful extensions: 6263 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 5958 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6259 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)