>TNNC_HALRO (P06706) Troponin C, body wall muscle|
          Length = 155

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +2

Query: 272 VGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGPHEVRCVQRNVLLQALED-ELP 448
           +  K  G+ +++LG         E+  E+D+  +G +   E  C+     +QA E+ ++P
Sbjct: 28  ISSKELGKVMKMLGQNPTEKDLQEMIEEVDIDGSGTIDFEEF-CLMMYRQMQAQEEAKIP 86

Query: 449 PDTIRYSSKIVSIDDQDGDGDGAKILHLADGS 544
               +  S+   + D DGDG G ++    DG+
Sbjct: 87  EREEKELSEAFRLFDLDGDGIGDELKAALDGT 118

>MINC_PHOLL (Q7N522) Probable septum site-determining protein minC|
          Length = 227

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 407 QRNVLLQALED--ELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLTGC 574
           Q  ++LQAL++  E  PD ++ +  +++I     D D   + H  D +  R   ++GC
Sbjct: 24  QPEIILQALQEKVEQAPDFLKNAPVVINISALPADADLKALHHAIDSAGFRIVGMSGC 81

>GIDA_STRT2 (Q5M250) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 633

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = +2

Query: 251 RALDALGVGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGP----HEVRCVQRNV 418
           R +DALG G+  +      + ++++++  G   R +  + +  L      H V   +   
Sbjct: 63  REIDALG-GEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLT 121

Query: 419 LLQALEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLTG 571
           L Q++ DE+  +     SK+V +        GAK + +  G+ LR +++ G
Sbjct: 122 LRQSMVDEILVE----DSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIG 168

>GIDA_STRT1 (Q5LXK0) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 633

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = +2

Query: 251 RALDALGVGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGP----HEVRCVQRNV 418
           R +DALG G+  +      + ++++++  G   R +  + +  L      H V   +   
Sbjct: 63  REIDALG-GEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLT 121

Query: 419 LLQALEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLTG 571
           L Q++ DE+  +     SK+V +        GAK + +  G+ LR +++ G
Sbjct: 122 LRQSMVDEILVE----DSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIG 168

>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 182 VVLESSPDRRTSGFAFFTWTNAFRALDALGV--GDKMRGRHLQL 307
           VV++    +R+ GF F T+TN   A DA+    G+ + GR +++
Sbjct: 36  VVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRV 79

>GIDA_MESFL (Q6F0E6) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 626

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
 Frame = +2

Query: 251 RALDALGVGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGK-LGPHEVRCVQRNVLLQ 427
           R +DALG G+  +      L  ++++SS G     + ++ + +    +  + V+  + LQ
Sbjct: 59  REIDALG-GEMAKAADKTALQTKLLNSSRGPGVWALRVQSDKEEYSKYMQKIVEEQINLQ 117

Query: 428 ALEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLTG 571
            +E  +  D I  ++ +  +  +DG+   +K + L  G+ L++++LTG
Sbjct: 118 LIES-IATDLIIENNTVTGVLLKDGEILKSKCVVLTTGTYLKSEILTG 164

>NALP6_HUMAN (P59044) NACHT-, LRR- and PYD-containing protein 6|
           (PYRIN-containing APAF1-like protein 5)
          Length = 892

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -3

Query: 358 HLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEGEAGRATVRRRLQHHA 179
           H+ +   R +  + +  ++    + L+  PE     E +GP EE E GRA   RR   H 
Sbjct: 125 HVLQLHARVKERNARSVKITKRFTKLLIAPESAAPEEALGPAEEPEPGRA---RRSDTHT 181

Query: 178 PNAL 167
            N L
Sbjct: 182 FNRL 185

>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1138

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 391 MGSQFSVHPEIHLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEG 224
           MGS ++    + +   F +   H P   Q+Q      +PY +  +R  G GP  +G
Sbjct: 630 MGSGYTFPAGVSVPGTFLQSTAHSPAGNQVQAGKQSHIPYSQ--QRPSGPGPMNQG 683


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.132    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,418,622
Number of Sequences: 219361
Number of extensions: 1536017
Number of successful extensions: 6263
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6259
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)