>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4|
          Length = 489

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 382 PSLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSR 489
           P++PA  R      S  RSRS++P+ + + +PSRSR
Sbjct: 447 PNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSR 482

>UL06_HHV11 (P10190) Virion protein UL6|
          Length = 676

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 379 PPSLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSRFMARRKQRRRGR 525
           PP  P G    PG     RSRSR+P       P +   +  R  RR GR
Sbjct: 627 PPPSPVGADFRPGASPRGRSRSRSPGRTARGAPDQGGGIGHRDGRRDGR 675

>BRPF1_HUMAN (P55201) Peregrin (Bromodomain and PHD finger-containing protein 1)|
            (BR140 protein)
          Length = 1214

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 394  AGKRKSPGMLSWRRSRSRTPTHAQTPT-PSRSRFMARRKQRRRGR 525
            AG  K PG     R    TP+H  +P  P +   M+  +QR+RGR
Sbjct: 902  AGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMSSLRQRKRGR 946

>VE2_HPV49 (P36795) Regulatory protein E2|
          Length = 488

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 385 SLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSRFMARRKQRRR 519
           S P     S   +S RRSRSRT T  +  + SRS+  +R + R R
Sbjct: 266 SSPTAASNSRKEVSRRRSRSRTRTRRREASTSRSQKASRSRSRSR 310

>MRIP_MOUSE (P97434) Myosin phosphatase Rho-interacting protein|
           (Rho-interacting protein 3) (p116Rip) (RIP3)
          Length = 1024

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 385 SLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSRFMARRKQRRRGR 525
           SLP GK KS    +  RS  +       P P + +  A R++RR GR
Sbjct: 492 SLPEGKNKSTSFETCSRSTEKQEAEPGEPDPEQKKSRA-RERRREGR 537

>VE2_HPV24 (P50770) Regulatory protein E2|
          Length = 467

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
 Frame = +1

Query: 370 TSCPPSLPAGKRKSPGMLSWRRSRSRTPT-------------------HAQTPTPSRSRF 492
           +S PP  P G R+ PG  S   S++ +PT                      +PT SR R 
Sbjct: 200 SSTPPDSPGGSRELPG--STANSKASSPTQQPQQACSDETTKRKRYGRRESSPTDSRCRR 257

Query: 493 MARRKQRRRGR 525
            +  +Q+++GR
Sbjct: 258 RSSSRQKKQGR 268

>RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ|
           protein-like 4) (RecQ4) (RTS)
          Length = 1208

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 385 SLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSR 489
           SLPA   ++P    W    +R  T +  PTP RSR
Sbjct: 64  SLPAAAEEAPEPRCWGPHLNRAATKSPQPTPGRSR 98

>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding|
           SR-like protein RA4) (Fragment)
          Length = 1048

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 430 RRSRSRTPTHAQTPTPSRSRFMARRKQRRRGR 525
           R+SRSR+P   ++ + SRSR    R+ R R R
Sbjct: 350 RKSRSRSPKRRRSRSGSRSRRSRHRRSRSRSR 381

>YL116_MIMIV (Q5UPJ3) Hypothetical protein L116|
          Length = 563

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 373 SCPPSLPAGKRKSPGMLSWR---RSRSRTPTHAQTPTPSRSRFMARRKQRRR 519
           SC  S    + +SP    +R   RSR R+P  ++  +P RSR+ +  + R R
Sbjct: 127 SCELSSERSRYRSPERSRYRSPERSRYRSPERSRYRSPERSRYRSPERSRYR 178

>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)|
          Length = 657

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 190 TSAAASD*SSWVRRTALGGPWSSEVVSRTR 101
           T+AA  + ++ VRRTA G   +S+VVS TR
Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTTR 415

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 400 KRKSPGMLSWR-RSRSRTPTHAQTPTPSRSRFMARRKQRRR 519
           +++SP     R RSRSR+P+H++     RSR   R   RRR
Sbjct: 276 RQRSPTRSKSRSRSRSRSPSHSRPRRRHRSRSRRRPSPRRR 316

>DNAE2_COREF (Q8FRX6) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1073

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +3

Query: 306 GISHHRGAFSGPGEVRDHPAFDVVPTELAR 395
           G   H G  SG   + D P  DVVPTE AR
Sbjct: 525 GQPRHLGIHSGGMVICDRPIADVVPTEWAR 554

>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54|
           kDa nuclear protein) (p54)
          Length = 484

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 400 KRKSPGMLSWRRSRSRTPTHAQTPTPSRSRFMARRKQRRRGR 525
           +R++P     RRSRSR+   + + + SR R  + R++R   R
Sbjct: 257 RRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSR 298

>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 394 AGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSRFMARRKQR 513
           + + +S   LS  RSRS T + + +P+PS+SR  +R + +
Sbjct: 476 SSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQ 515

>CY24A_MOUSE (Q61462) Cytochrome b-245 light chain (p22 phagocyte B-cytochrome)|
           (Neutrophil cytochrome b 22 kDa polypeptide) (p22-phox)
           (p22phox) (Cytochrome b(558) alpha chain) (Cytochrome
           b558 alpha subunit) (Superoxide-generating NADPH oxidase
           light ch
          Length = 191

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 447 DPDARPDTDAEQKPFHGEEEAAKA 518
           +P  RP  +  +KP  GEEEAA A
Sbjct: 153 NPPPRPPAEVRKKPSEGEEEAASA 176


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,209,883
Number of Sequences: 219361
Number of extensions: 767299
Number of successful extensions: 3802
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3580
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)