ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart24g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106084.1| Zea mays PCO072275 mRNA sequence 48 0.031
2emb|AJ581529.1|HVU581529 Hordeum vulgare xi gene for xylanase in... 46 0.12
3gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 44 0.48
4gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 44 0.48
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.48
6gb|AC135594.4| Oryza sativa chromosome 3 BAC OSJNBa0024F18 genom... 44 0.48
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
8gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.48
9gb|BC056573.1| Danio rerio zgc:65879, mRNA (cDNA clone MGC:65879... 42 1.9
10gb|BC065361.1| Danio rerio zgc:65879, mRNA (cDNA clone MGC:77440... 42 1.9
11ref|NM_200561.2| Danio rerio zgc:65879 (zgc:65879), mRNA 42 1.9
12gb|AE011784.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.9
13ref|XM_624993.1| PREDICTED: Apis mellifera similar to hepatocyte... 42 1.9
14ref|NM_174725.2| Bos taurus endothelial PAS domain protein 1 (EP... 42 1.9
15gb|AE004966.1| Pseudomonas aeruginosa PAO1, section 527 of 529 o... 42 1.9
16dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.9
17dbj|AB018399.1| Bos taurus mRNA for endothelial PAS domain prote... 42 1.9
18gb|AC153812.1| Homo sapiens chromosome 9 clone fa1022, complete ... 40 7.5
19ref|NM_187296.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.5
20ref|NM_190078.1| Oryza sativa (japonica cultivar-group), predic... 40 7.5
21ref|XM_592084.2| PREDICTED: Bos taurus similar to AT rich intera... 40 7.5
22ref|NM_213272.1| Danio rerio zgc:77377 (zgc:77377), mRNA 40 7.5
23emb|AJ697851.1| Triticum aestivum xi-IB gene for xylanase inhibi... 40 7.5
24ref|XM_860856.1| PREDICTED: Canis familiaris similar to AT rich ... 40 7.5
25ref|XM_860834.1| PREDICTED: Canis familiaris similar to AT rich ... 40 7.5
26ref|XM_847453.1| PREDICTED: Canis familiaris similar to AT rich ... 40 7.5
27emb|CR392000.2| Human DNA sequence from clone WI2-1959D15 on chr... 40 7.5
28emb|AL596442.33| Human DNA sequence from clone RP11-302L19 on ch... 40 7.5
29gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 7.5
30gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 7.5
31emb|AL080313.13|HSDJ448I9 Human DNA sequence from clone RP3-448I... 40 7.5
32gb|BC068186.1| Danio rerio zgc:77377, mRNA (cDNA clone MGC:77377... 40 7.5
33emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genom... 40 7.5
34dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 7.5
35emb|AJ581532.1|SCE581532 Secale cereale xi-II/III gene for xylan... 40 7.5
36gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 7.5
37dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
38dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
40gb|AC135560.4| Oryza sativa chromosome 3 BAC OSJNBa0031I04 genom... 40 7.5
41dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
42dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.5
43dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
44dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
45dbj|AB178471.1| Triticum aestivum Taxi-III gene for xylanase inh... 40 7.5
46dbj|AB114627.1| Triticum aestivum Taxi-III mRNA for xylanase inh... 40 7.5
47dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
48gb|AY107570.1| Zea mays PCO128969 mRNA sequence 40 7.5
49gb|AF155932.1| Avena sativa 1,3-beta glucanase (Oglc13) mRNA, pa... 40 7.5
50gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 7.5
51gb|AC005696.1|AC005696 Homo sapiens chromosome 17, clone hRPK.7... 40 7.5
52gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 7.5
53gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.5
54gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 7.5
55gb|M30439.1|MUSMK1A Mouse intronless potassium channel gene MK1 40 7.5 
>gb|AY106084.1| Zea mays PCO072275 mRNA sequence
          Length = 1307

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 176 cgtcagcaaggacgcctccacctccctctaca 207
           ||||| ||||||||| ||||||||||||||||
Sbjct: 163 cgtcaccaaggacgcgtccacctccctctaca 194
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>emb|AJ581529.1|HVU581529 Hordeum vulgare xi gene for xylanase inhibitor
          Length = 1255

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 177 gtcagcaaggacgcctccacctccctctaca 207
           |||| |||||||||| |||||||||||||||
Sbjct: 97  gtcaccaaggacgccgccacctccctctaca 127
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 95     tgcgctcgcggcgctgctggca 116
              ||||||||||||||||||||||
Sbjct: 907536 tgcgctcgcggcgctgctggca 907557
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 104     ggcgctgctggcactgggggtg 125
               ||||||||||||||||||||||
Sbjct: 2646850 ggcgctgctggcactgggggtg 2646871



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     tggcccgcgtcagcaaggac 188
               ||||||||||||||||||||
Sbjct: 2117095 tggcccgcgtcagcaaggac 2117114
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 283      cgtccccgcaccgcatcgttcc 304
                ||||||||||||||||||||||
Sbjct: 33808541 cgtccccgcaccgcatcgttcc 33808520



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 190      cctccacctccctctacaac 209
                ||||||||||||||||||||
Sbjct: 18957460 cctccacctccctctacaac 18957441
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>gb|AC135594.4| Oryza sativa chromosome 3 BAC OSJNBa0024F18 genomic sequence, complete
             sequence
          Length = 159795

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 283   cgtccccgcaccgcatcgttcc 304
             ||||||||||||||||||||||
Sbjct: 64699 cgtccccgcaccgcatcgttcc 64720
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 283      cgtccccgcaccgcatcgttcc 304
                ||||||||||||||||||||||
Sbjct: 33899013 cgtccccgcaccgcatcgttcc 33898992



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 190      cctccacctccctctacaac 209
                ||||||||||||||||||||
Sbjct: 18951501 cctccacctccctctacaac 18951482
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 329     ggtgtccactacgtaccgcccgcccg 354
               ||||||||| ||||||||||||||||
Sbjct: 2744772 ggtgtccaccacgtaccgcccgcccg 2744797



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 243     ctcgacctcgccggccccatgctc 266
               |||||||||||||||| |||||||
Sbjct: 4865873 ctcgacctcgccggccacatgctc 4865896



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 241     tcctcgacctcgccggcccc 260
               ||||||||||||||||||||
Sbjct: 2974006 tcctcgacctcgccggcccc 2973987



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 235     cgctgctcctcgacctcgccggcc 258
               ||||||||||||||| ||||||||
Sbjct: 1163485 cgctgctcctcgaccacgccggcc 1163508
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>gb|BC056573.1| Danio rerio zgc:65879, mRNA (cDNA clone MGC:65879 IMAGE:6800889),
            complete cds
          Length = 2701

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 110  gctggcactgggggtgctgctgggc 134
            ||||||||||| |||||||||||||
Sbjct: 1357 gctggcactggcggtgctgctgggc 1381
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>gb|BC065361.1| Danio rerio zgc:65879, mRNA (cDNA clone MGC:77440 IMAGE:6971142),
            complete cds
          Length = 4028

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 110  gctggcactgggggtgctgctgggc 134
            ||||||||||| |||||||||||||
Sbjct: 1355 gctggcactggcggtgctgctgggc 1379
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>ref|NM_200561.2| Danio rerio zgc:65879 (zgc:65879), mRNA
          Length = 4028

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 110  gctggcactgggggtgctgctgggc 134
            ||||||||||| |||||||||||||
Sbjct: 1355 gctggcactggcggtgctgctgggc 1379
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>gb|AE011784.1| Xanthomonas axonopodis pv. citri str. 306,  section 162 of 469 of the
             complete genome
          Length = 13803

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   cgcggcgctgctggcactggg 121
             |||||||||||||||||||||
Sbjct: 11882 cgcggcgctgctggcactggg 11862
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>ref|XM_624993.1| PREDICTED: Apis mellifera similar to hepatocyte nuclear factor 6
            (LOC552619), mRNA
          Length = 1788

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 240  ctcctcgacctcgccggcccc 260
            |||||||||||||||||||||
Sbjct: 1230 ctcctcgacctcgccggcccc 1210
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>ref|NM_174725.2| Bos taurus endothelial PAS domain protein 1 (EPAS1), mRNA
          Length = 2888

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 107  gctgctggcactgggggtgct 127
            |||||||||||||||||||||
Sbjct: 1695 gctgctggcactgggggtgct 1675
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>gb|AE004966.1| Pseudomonas aeruginosa PAO1, section 527 of 529 of the complete
            genome
          Length = 10821

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 103  cggcgctgctggcactgggggtgctgctg 131
            |||||||||||| ||||||||||| ||||
Sbjct: 9199 cggcgctgctggaactgggggtgccgctg 9171
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 96    gcgctcgcggcgctgctggcactgggggt 124
             ||||||||||||||||| || ||||||||
Sbjct: 78565 gcgctcgcggcgctgctcgccctgggggt 78537
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>dbj|AB018399.1| Bos taurus mRNA for endothelial PAS domain protein
            1/hypoxia-inducible factor-2 alpha, complete cds
          Length = 2888

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 107  gctgctggcactgggggtgct 127
            |||||||||||||||||||||
Sbjct: 1695 gctgctggcactgggggtgct 1675
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>gb|AC153812.1| Homo sapiens chromosome 9 clone fa1022, complete sequence
          Length = 38508

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   accgcccgcccggctgcccc 362
             ||||||||||||||||||||
Sbjct: 30203 accgcccgcccggctgcccc 30222
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>ref|NM_187296.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 474

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 446 cgccaccaccatcacgctcgccgccagcacca 477
           ||||||||||| |||| ||||||||| |||||
Sbjct: 294 cgccaccaccaccacggtcgccgccaacacca 263
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>ref|NM_190078.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1305

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 194 cacctccctctacaacatcgccatcaag 221
           ||||||||||||||  ||||||||||||
Sbjct: 129 cacctccctctacacgatcgccatcaag 156
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>ref|XM_592084.2| PREDICTED: Bos taurus similar to AT rich interactive domain 1A
           (SWI- like) isoform a, transcript variant 1 (LOC540181),
           mRNA
          Length = 7114

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 110 gctggcactgggggtgctgctggg 133
           |||||| |||||||||||||||||
Sbjct: 545 gctggctctgggggtgctgctggg 522
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>ref|NM_213272.1| Danio rerio zgc:77377 (zgc:77377), mRNA
          Length = 3862

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  cagctcggcggctgcgctcg 102
           ||||||||||||||||||||
Sbjct: 556 cagctcggcggctgcgctcg 537
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>emb|AJ697851.1| Triticum aestivum xi-IB gene for xylanase inhibitor precursor, exon
           1
          Length = 1206

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 177 gtcagcaaggacgcctccacctccctctacaacatc 212
           |||| ||||||| || ||||||||||||||| ||||
Sbjct: 82  gtcaccaaggacaccgccacctccctctacaccatc 117
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>ref|XM_860856.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 1A
            (SWI- like) isoform c, transcript variant 3 (LOC487352),
            mRNA
          Length = 7836

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 110  gctggcactgggggtgctgctggg 133
            |||||| |||||||||||||||||
Sbjct: 2017 gctggctctgggggtgctgctggg 1994
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>ref|XM_860834.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 1A
            (SWI- like) isoform c, transcript variant 2 (LOC487352),
            mRNA
          Length = 7595

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 110  gctggcactgggggtgctgctggg 133
            |||||| |||||||||||||||||
Sbjct: 2017 gctggctctgggggtgctgctggg 1994
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>ref|XM_847453.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 1A
            (SWI- like) isoform c, transcript variant 1 (LOC487352),
            mRNA
          Length = 8487

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 110  gctggcactgggggtgctgctggg 133
            |||||| |||||||||||||||||
Sbjct: 2017 gctggctctgggggtgctgctggg 1994
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>emb|CR392000.2| Human DNA sequence from clone WI2-1959D15 on chromosome 9, complete
             sequence
          Length = 32108

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   accgcccgcccggctgcccc 362
             ||||||||||||||||||||
Sbjct: 17248 accgcccgcccggctgcccc 17267
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>emb|AL596442.33| Human DNA sequence from clone RP11-302L19 on chromosome 6 Contains a
             novel gene, a ribosomal protein L12 (RPL12) and five CpG
             islands, complete sequence
          Length = 110817

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   gcactgggggtgctgctggg 133
             ||||||||||||||||||||
Sbjct: 49696 gcactgggggtgctgctggg 49715
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  catcgccatcaaggtcggcg 228
            ||||||||||||||||||||
Sbjct: 1912 catcgccatcaaggtcggcg 1893
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 87      tcggcggctgcgctcgcggc 106
               ||||||||||||||||||||
Sbjct: 1473465 tcggcggctgcgctcgcggc 1473446
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>emb|AL080313.13|HSDJ448I9 Human DNA sequence from clone RP3-448I9 on chromosome 6 Contains two
             novel genes, complete sequence
          Length = 94371

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   tggcactgggggtgctgctg 131
             ||||||||||||||||||||
Sbjct: 30560 tggcactgggggtgctgctg 30579
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>gb|BC068186.1| Danio rerio zgc:77377, mRNA (cDNA clone MGC:77377 IMAGE:6969157),
           complete cds
          Length = 3862

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  cagctcggcggctgcgctcg 102
           ||||||||||||||||||||
Sbjct: 556 cagctcggcggctgcgctcg 537
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>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16
          Length = 227214

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    gccgacgatggcggccagcc 163
              ||||||||||||||||||||
Sbjct: 124694 gccgacgatggcggccagcc 124713
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     gcggcgctgctggcactggg 121
               ||||||||||||||||||||
Sbjct: 1937898 gcggcgctgctggcactggg 1937917
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>emb|AJ581532.1|SCE581532 Secale cereale xi-II/III gene for xylanase inhibitor
          Length = 1245

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 177 gtcagcaaggacgcctccacctccctctacaacatc 212
           |||| ||||||| || ||||||||||||||| ||||
Sbjct: 90  gtcaccaaggaccccgccacctccctctacaccatc 125
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 88      cggcggctgcgctcgcggcgctgc 111
               |||||||||||| |||||||||||
Sbjct: 3773962 cggcggctgcgcgcgcggcgctgc 3773985
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 446      cgccaccaccatcacgctcgccgccagcacca 477
                ||||||||||| |||| ||||||||| |||||
Sbjct: 17342393 cgccaccaccaccacggtcgccgccaacacca 17342362
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 239     gctcctcgacctcgccggcc 258
               ||||||||||||||||||||
Sbjct: 9883089 gctcctcgacctcgccggcc 9883070
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 194      cacctccctctacaacatcgccatcaag 221
                ||||||||||||||  ||||||||||||
Sbjct: 41168878 cacctccctctacacgatcgccatcaag 41168905
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>gb|AC135560.4| Oryza sativa chromosome 3 BAC OSJNBa0031I04 genomic sequence, complete
             sequence
          Length = 168859

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   cctccacctccctctacaac 209
             ||||||||||||||||||||
Sbjct: 42181 cctccacctccctctacaac 42200
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>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504E02
          Length = 137468

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 194   cacctccctctacaacatcgccatcaag 221
             ||||||||||||||  ||||||||||||
Sbjct: 65933 cacctccctctacacgatcgccatcaag 65960
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      gcgctcgcggcgctgctggc 115
               ||||||||||||||||||||
Sbjct: 1403399 gcgctcgcggcgctgctggc 1403380
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>dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0640E12
          Length = 167353

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 446    cgccaccaccatcacgctcgccgccagcacca 477
              ||||||||||| |||| ||||||||| |||||
Sbjct: 147518 cgccaccaccaccacggtcgccgccaacacca 147487
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>dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0434A03
          Length = 146505

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 446   cgccaccaccatcacgctcgccgccagcacca 477
             ||||||||||| |||| ||||||||| |||||
Sbjct: 10617 cgccaccaccaccacggtcgccgccaacacca 10586
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>dbj|AB178471.1| Triticum aestivum Taxi-III gene for xylanase inhibitor, complete cds,
            upstream region
          Length = 2322

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 177  gtcagcaaggacgcctccacctccctctacaacatc 212
            |||| ||||||| || ||||||||||||||| ||||
Sbjct: 1158 gtcaccaaggacaccgccacctccctctacaccatc 1193
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>dbj|AB114627.1| Triticum aestivum Taxi-III mRNA for xylanase inhibitor TAXI-III,
           complete cds
          Length = 1411

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 177 gtcagcaaggacgcctccacctccctctacaacatc 212
           |||| ||||||| || ||||||||||||||| ||||
Sbjct: 161 gtcaccaaggacaccgccacctccctctacaccatc 196
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>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   gctcctcgacctcgccggcc 258
             ||||||||||||||||||||
Sbjct: 79724 gctcctcgacctcgccggcc 79705
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>gb|AY107570.1| Zea mays PCO128969 mRNA sequence
          Length = 2022

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 437  ctccgacgacgccaccacca 456
            ||||||||||||||||||||
Sbjct: 1517 ctccgacgacgccaccacca 1536
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>gb|AF155932.1| Avena sativa 1,3-beta glucanase (Oglc13) mRNA, partial cds
          Length = 1045

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 443 cgacgccaccaccatcacgctcgccgcc 470
           |||| |||||||| ||||||||||||||
Sbjct: 687 cgacaccaccaccttcacgctcgccgcc 660
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     gcggcgctgctggcactggg 121
               ||||||||||||||||||||
Sbjct: 1959923 gcggcgctgctggcactggg 1959942
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>gb|AC005696.1|AC005696 Homo sapiens chromosome 17, clone  hRPK.74_E_22, complete sequence
          Length = 177411

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   gcgtcagcaaggacgcctcc 194
             ||||||||||||||||||||
Sbjct: 68987 gcgtcagcaaggacgcctcc 68968
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    ggccgacgatggcggccagc 162
              ||||||||||||||||||||
Sbjct: 932770 ggccgacgatggcggccagc 932789



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    ggccgacgatggcggccagc 162
              ||||||||||||||||||||
Sbjct: 265658 ggccgacgatggcggccagc 265677
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 143     ggccgacgatggcggccagc 162
               ||||||||||||||||||||
Sbjct: 2212074 ggccgacgatggcggccagc 2212055
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     gcgctcgcggcgctgctggc 115
              ||||||||||||||||||||
Sbjct: 180251 gcgctcgcggcgctgctggc 180270
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>gb|M30439.1|MUSMK1A Mouse intronless potassium channel gene MK1
          Length = 2222

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 533 gcctggggagctgctggagt 552
           ||||||||||||||||||||
Sbjct: 146 gcctggggagctgctggagt 165


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,889,948
Number of Sequences: 3902068
Number of extensions: 3889948
Number of successful extensions: 84048
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81250
Number of HSP's gapped (non-prelim): 2798
length of query: 556
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 533
effective length of database: 17,143,297,704
effective search space: 9137377676232
effective search space used: 9137377676232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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