ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart24f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RPB3A_ARATH (Q39211) DNA-directed RNA polymerase II 36 kDa polyp... 209 6e-54
2RPB3B_ARATH (Q39212) DNA-directed RNA polymerase II 36 kDa polyp... 183 3e-46
3RPB3_MOUSE (P97760) DNA-directed RNA polymerase II 33 kDa polype... 123 4e-28
4RPB3_HUMAN (P19387) DNA-directed RNA polymerase II 33 kDa polype... 122 6e-28
5RPB3_YEAST (P16370) DNA-directed RNA polymerase II 45 kDa polype... 104 2e-22
6RPB3_SCHPO (P37382) DNA-directed RNA polymerase II 33 kDa polype... 101 2e-21
7RPOD_METMA (Q8PV16) DNA-directed RNA polymerase subunit D (EC 2.... 87 3e-17
8CNJC_TETTH (P16925) Conjugation stage-specific protein 83 5e-16
9RPOD_ARCFU (O28002) DNA-directed RNA polymerase subunit D (EC 2.... 75 1e-13
10RPOD_PYRFU (Q8U0E4) DNA-directed RNA polymerase subunit D (EC 2.... 74 3e-13
11RPOD_AERPE (Q9YB53) DNA-directed RNA polymerase subunit D (EC 2.... 73 5e-13
12RPC5_SCHPO (O94616) DNA-directed RNA polymerases I and III 40 kD... 72 9e-13
13RPOD_PYRAE (Q8ZYQ3) DNA-directed RNA polymerase subunit D (EC 2.... 70 3e-12
14RPA5_HUMAN (O15160) DNA-directed RNA polymerase I 40 kDa polypep... 69 1e-11
15RPA5_MOUSE (P52432) DNA-directed RNA polymerase I 40 kDa polypep... 69 1e-11
16RPC5_YEAST (P07703) DNA-directed RNA polymerases I and III 40 kD... 69 1e-11
17RPOD_THEVO (Q97B93) DNA-directed RNA polymerase subunit D (EC 2.... 67 3e-11
18RPOD_THEAC (Q9HJD9) DNA-directed RNA polymerase subunit D (EC 2.... 67 3e-11
19RPOD_SULSO (P95989) DNA-directed RNA polymerase subunit D (EC 2.... 67 4e-11
20RPOD_PYRKO (Q5JJF4) DNA-directed RNA polymerase subunit D (EC 2.... 65 1e-10
21RPOD_PYRAB (Q9V198) DNA-directed RNA polymerase subunit D (EC 2.... 65 1e-10
22RPOD_PICTO (Q6KZP5) DNA-directed RNA polymerase subunit D (EC 2.... 65 2e-10
23RPOD_METTH (O26144) DNA-directed RNA polymerase subunit D (EC 2.... 65 2e-10
24RPOD_PYRHO (O59303) DNA-directed RNA polymerase subunit D (EC 2.... 64 2e-10
25RPOD_SULTO (Q96YW0) DNA-directed RNA polymerase subunit D (EC 2.... 64 2e-10
26RPOD_METKA (Q8TVB8) DNA-directed RNA polymerase subunit D (EC 2.... 64 3e-10
27RPOD_METJA (Q57648) DNA-directed RNA polymerase subunit D (EC 2.... 60 3e-09
28RPOD_SULAC (P39471) DNA-directed RNA polymerase subunit D (EC 2.... 60 3e-09
29RPOD_HALSA (Q9HQJ4) DNA-directed RNA polymerase subunit D (EC 2.... 57 3e-08
30RPOD_HALMA (Q00813) DNA-directed RNA polymerase subunit D (EC 2.... 53 7e-07
31RPOA_CARHZ (Q3A9U4) DNA-directed RNA polymerase alpha chain (EC ... 35 0.16
32RPOA_PORGI (Q7MTP0) DNA-directed RNA polymerase alpha chain (EC ... 34 0.35
33RPOA_SYNY3 (P73297) DNA-directed RNA polymerase alpha chain (EC ... 33 0.77
34RPOA_MYCGA (Q9RDV6) DNA-directed RNA polymerase alpha chain (EC ... 32 1.3
35XLNR_ASPNG (O42804) Transcriptional activator xlnR 32 1.7
36RPOA_CLOTE (Q890R0) DNA-directed RNA polymerase alpha chain (EC ... 32 1.7
37RPOA_BORGA (Q661B8) DNA-directed RNA polymerase alpha chain (EC ... 31 2.2
38RPOA_STAS1 (Q49ZE2) DNA-directed RNA polymerase alpha chain (EC ... 31 2.9
39RPOA_STAHJ (Q4L888) DNA-directed RNA polymerase alpha chain (EC ... 31 2.9
40RPOA_STAAW (P66707) DNA-directed RNA polymerase alpha chain (EC ... 31 2.9
41RPOA_STAAS (Q6G797) DNA-directed RNA polymerase alpha chain (EC ... 31 2.9
42RPOA_STAAR (Q6GEK9) DNA-directed RNA polymerase alpha chain (EC ... 31 2.9
43RPOA_STAAN (P66706) DNA-directed RNA polymerase alpha chain (EC ... 31 2.9
44RPOA_STAAM (P66705) DNA-directed RNA polymerase alpha chain (EC ... 31 2.9
45RPOA_STAAC (Q5HDY4) DNA-directed RNA polymerase alpha chain (EC ... 31 2.9
46RPOA_CLOPE (Q9LBW9) DNA-directed RNA polymerase alpha chain (EC ... 31 2.9
47RPOA_VIBVY (Q7MPG4) DNA-directed RNA polymerase alpha chain (EC ... 31 2.9
48RPOA_VIBVU (Q8DE63) DNA-directed RNA polymerase alpha chain (EC ... 31 2.9
49RPOA_VIBPA (Q87SZ0) DNA-directed RNA polymerase alpha chain (EC ... 31 2.9
50RPOA_STAES (Q8CRI4) DNA-directed RNA polymerase alpha chain (EC ... 30 3.8
51RPOA_STAEQ (Q5HM25) DNA-directed RNA polymerase alpha chain (EC ... 30 3.8
52RPOA_XANOR (Q5GWV9) DNA-directed RNA polymerase alpha chain (EC ... 30 3.8
53RPOA_XANC8 (Q4URG3) DNA-directed RNA polymerase alpha chain (EC ... 30 3.8
54RPOA_XANC5 (Q3BWV9) DNA-directed RNA polymerase alpha chain (EC ... 30 3.8
55RPOA_BORBU (O51455) DNA-directed RNA polymerase alpha chain (EC ... 30 3.8
56RPOA_VIBCH (Q9KP08) DNA-directed RNA polymerase alpha chain (EC ... 30 3.8
57RPOA_XANCP (P0A0Y1) DNA-directed RNA polymerase alpha chain (EC ... 30 3.8
58RPOA_XANAC (P0A0Y2) DNA-directed RNA polymerase alpha chain (EC ... 30 3.8
59RPOA_BLOFL (Q7VQC3) DNA-directed RNA polymerase alpha chain (EC ... 30 3.8
60RPOA_VIBF1 (Q5E889) DNA-directed RNA polymerase alpha chain (EC ... 30 5.0
61RPOA_HAEDU (Q7VKF8) DNA-directed RNA polymerase alpha chain (EC ... 30 5.0
62RX1_CHICK (Q9PVY0) Retinal homeobox protein Rx1 (cRax1) 30 5.0
63RPOA_SCEOB (P19587) DNA-directed RNA polymerase alpha chain (EC ... 30 6.5
64RPOA_WIGBR (Q8D1Y8) DNA-directed RNA polymerase alpha chain (EC ... 30 6.5
65RPOA_BACFR (Q64NN5) DNA-directed RNA polymerase alpha chain (EC ... 30 6.5
66RPOA_BACFN (Q5L8D6) DNA-directed RNA polymerase alpha chain (EC ... 30 6.5
67WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11) 29 8.5
68WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11) 29 8.5
69WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 ... 29 8.5
70RPOA_YERPS (Q664U6) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
71RPOA_YERPE (Q8ZJ87) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
72RPOA_SHISS (Q3YWW4) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
73RPOA_SHIFL (P0A7Z9) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
74RPOA_SHIDS (Q32B56) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
75RPOA_SHIBS (Q31VY1) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
76RPOA_SALTY (P0A7Z7) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
77RPOA_SALTI (P0A7Z8) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
78RPOA_SALPA (Q5PK10) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
79RPOA_SALCH (Q57J56) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
80RPOA_PHOLL (Q7MYH5) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
81RPOA_IDILO (Q5QXV8) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
82RPOA_ERWCT (Q6CZZ5) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
83RPOA_ECOLI (P0A7Z4) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
84RPOA_ECOL6 (P0A7Z5) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
85RPOA_ECO57 (P0A7Z6) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
86RPOA_BACTN (Q8A4A2) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
87RPOA_THEMA (Q9X1I2) DNA-directed RNA polymerase alpha chain (EC ... 29 8.5
88WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11) 29 8.5 
>RPB3A_ARATH (Q39211) DNA-directed RNA polymerase II 36 kDa polypeptide A (EC|
           2.7.7.6) (RNA polymerase II subunit 3)
          Length = 319

 Score =  209 bits (531), Expect = 6e-54
 Identities = 105/136 (77%), Positives = 120/136 (88%)
 Frame = +1

Query: 106 GASYQRFPRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVL 285
           GA+YQRFP+++IRELKD+YAKFEL++TD SMANALRRVMI+EVPTVAIDLVEIE NSSVL
Sbjct: 3   GATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 62

Query: 286 NDEFLAHRLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVT 465
           NDEF+AHRLGLIPLTS  AMSMRFSRDCDACDGDG CE CSVEF L+++   + QTL+VT
Sbjct: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCV-TDQTLDVT 121

Query: 466 STKDLRSTDPKVCPVD 513
           S +DL S DP V PVD
Sbjct: 122 S-RDLYSADPTVTPVD 136
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>RPB3B_ARATH (Q39212) DNA-directed RNA polymerase II 36 kDa polypeptide B (EC|
           2.7.7.6) (RNA polymerase II subunit 3)
          Length = 319

 Score =  183 bits (465), Expect = 3e-46
 Identities = 95/136 (69%), Positives = 112/136 (82%)
 Frame = +1

Query: 106 GASYQRFPRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVL 285
           G +YQRFP V+IRELKD+YAKFEL++TD SMANALRRVMI+EVPT+AI LV+IE NSSVL
Sbjct: 3   GVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVL 62

Query: 286 NDEFLAHRLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVT 465
           NDEF+A RL LIPLTS  AMSMRF +DC+ C+GD  CE CSVEF L+A+   + QTL+VT
Sbjct: 63  NDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCV-TDQTLDVT 121

Query: 466 STKDLRSTDPKVCPVD 513
           S +DL S DP V PVD
Sbjct: 122 S-RDLYSADPTVTPVD 136
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>RPB3_MOUSE (P97760) DNA-directed RNA polymerase II 33 kDa polypeptide (EC|
           2.7.7.6) (RPB3) (RNA polymerase II subunit 3) (RPB33)
           (RPB31)
          Length = 275

 Score =  123 bits (308), Expect = 4e-28
 Identities = 70/133 (52%), Positives = 91/133 (68%), Gaps = 1/133 (0%)
 Frame = +1

Query: 115 YQRFPRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDE 294
           Y   P VRI EL +E  KF +++TD ++AN++RRV IAEVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62

Query: 295 FLAHRLGLIPLTSSGAM-SMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTST 471
           F+AHRLGLIPLTS   +  +++SRDC     +  C  CSVEF L  R  +  QT  VTS 
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNED-QTRHVTS- 117

Query: 472 KDLRSTDPKVCPV 510
           +DL S  P+V PV
Sbjct: 118 RDLISNSPRVIPV 130
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>RPB3_HUMAN (P19387) DNA-directed RNA polymerase II 33 kDa polypeptide (EC|
           2.7.7.6) (RPB3) (RNA polymerase II subunit 3) (RPB33)
           (RPB31)
          Length = 275

 Score =  122 bits (307), Expect = 6e-28
 Identities = 70/133 (52%), Positives = 91/133 (68%), Gaps = 1/133 (0%)
 Frame = +1

Query: 115 YQRFPRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDE 294
           Y   P VRI EL DE  KF +++TD ++AN++RRV IAEVP +AID V+I++NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 295 FLAHRLGLIPLTSSGAM-SMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTST 471
           F+AHRLGLIPL S   +  +++SRDC     +  C  CSVEF L  R  +  QT  VTS 
Sbjct: 63  FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNED-QTRHVTS- 117

Query: 472 KDLRSTDPKVCPV 510
           +DL S  P+V PV
Sbjct: 118 RDLISNSPRVIPV 130
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>RPB3_YEAST (P16370) DNA-directed RNA polymerase II 45 kDa polypeptide (EC|
           2.7.7.6) (B44.5)
          Length = 318

 Score =  104 bits (259), Expect = 2e-22
 Identities = 61/118 (51%), Positives = 78/118 (66%)
 Frame = +1

Query: 127 PRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAH 306
           P+V+IRE   +   F L + D +MAN+LRRVMIAE+PT+AID VE+E+N++VL DEF+AH
Sbjct: 6   PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65

Query: 307 RLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDL 480
           RLGLIPL S     + +SRDC   D    C+ CSV   L A   +S  T  V S KDL
Sbjct: 66  RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFG-ESESTTNVYS-KDL 118
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>RPB3_SCHPO (P37382) DNA-directed RNA polymerase II 33 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 3)
          Length = 297

 Score =  101 bits (251), Expect = 2e-21
 Identities = 61/150 (40%), Positives = 87/150 (58%), Gaps = 19/150 (12%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 312
           + IR +      F L +T  ++AN+LRRV++AE+PTVAIDLVEI  N+SV+ DEFLAHRL
Sbjct: 7   ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66

Query: 313 GLIPLTSSG-----AMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSG------QTLE 459
           G+IPL SS       + + ++R+CD    D  C  CSVE  L A+ T  G      + L 
Sbjct: 67  GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLV 123

Query: 460 VTSTKDL--------RSTDPKVCPVDQQRE 525
           V+S   L        +S  P +C + +++E
Sbjct: 124 VSSNSSLGHPILADPKSRGPLICKLRKEQE 153
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>RPOD_METMA (Q8PV16) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 266

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 54/127 (42%), Positives = 71/127 (55%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 312
           V I EL D  AKF L     + AN +RR MIA+VPT+AI+ V +  N+SVL DE LA RL
Sbjct: 5   VDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALRL 64

Query: 313 GLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTD 492
            LIPL +     M    +C+ C G+G C  C V   L+A    +        ++DL S+D
Sbjct: 65  SLIPLVTDIETYMP-QAECEVCGGEG-CPACEVSLTLSAEGPGT------VYSRDLISSD 116

Query: 493 PKVCPVD 513
           PK+ P D
Sbjct: 117 PKIQPAD 123
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>CNJC_TETTH (P16925) Conjugation stage-specific protein|
          Length = 310

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 42/113 (37%), Positives = 72/113 (63%)
 Frame = +1

Query: 130 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 309
           ++ +  L++   +F L++ D S+AN+LRR+++AE+ T+AI  V++  N+S L DE++AHR
Sbjct: 5   KLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHR 64

Query: 310 LGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTS 468
           LGLIPL S+      +  +C+     G C+ C++ F L   +  + + LEVTS
Sbjct: 65  LGLIPLNSAKVDDYNYIWNCNC---QGECDRCTIHFDLRV-SNFTNEVLEVTS 113
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>RPOD_ARCFU (O28002) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 264

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 45/125 (36%), Positives = 64/125 (51%)
 Frame = +1

Query: 127 PRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAH 306
           P + I E KD   KF LK+   ++AN+ RR M AEVP +A+D V+I  NSS   DE +AH
Sbjct: 3   PEIEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIAH 62

Query: 307 RLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRS 486
           RL ++P+ +      RF+   +   G   C +C + F L           +V  + D  S
Sbjct: 63  RLAMLPIKT---YLDRFNMQSECSCGGEGCPNCQISFRLNVEGP------KVVYSGDFIS 113

Query: 487 TDPKV 501
            DP V
Sbjct: 114 DDPDV 118
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>RPOD_PYRFU (Q8U0E4) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 261

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 53/127 (41%), Positives = 69/127 (54%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 312
           V+I E K++  KF LK    S ANALRR ++ EVPT A+D VE   N S L DE +AHRL
Sbjct: 6   VQILEKKEDSIKFVLKGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 65

Query: 313 GLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTD 492
            +IPLT+      RF  + DA + D      S+E      A   G    +  + DL+S D
Sbjct: 66  AMIPLTTP---VDRF--ELDALELDDYTVTLSLE------AEGPG----IVYSGDLKSDD 110

Query: 493 PKVCPVD 513
           P V PV+
Sbjct: 111 PDVKPVN 117
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>RPOD_AERPE (Q9YB53) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 290

 Score = 73.2 bits (178), Expect = 5e-13
 Identities = 42/126 (33%), Positives = 68/126 (53%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 312
           V + EL     +  ++       NA+RR ++++VPT+A+D   I  N++ + DE +AHRL
Sbjct: 13  VEVVELDSLRVRLRIRGYPVVFVNAIRRTVLSDVPTMAVDYAYIFDNTTAVYDEMVAHRL 72

Query: 313 GLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTD 492
           GL+ L S+ A+  ++ R  +    + S E C VE  L A     G+T    +  DL  +D
Sbjct: 73  GLVVLDSNEAVE-KYRRPEECAGKEPSEEDCFVEVSLEAEVDAEGETGRYITAGDLSISD 131

Query: 493 PKVCPV 510
           P+V PV
Sbjct: 132 PQVKPV 137
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>RPC5_SCHPO (O94616) DNA-directed RNA polymerases I and III 40 kDa polypeptide|
           (EC 2.7.7.6) (AC40)
          Length = 348

 Score = 72.4 bits (176), Expect = 9e-13
 Identities = 33/72 (45%), Positives = 51/72 (70%)
 Frame = +1

Query: 130 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 309
           +V I  L  E   FE+   DAS+ANA RR++IAE+PT+A + V I +N+S++ DE L+HR
Sbjct: 47  KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 106

Query: 310 LGLIPLTSSGAM 345
           +GL+P+++   M
Sbjct: 107 IGLVPISADPDM 118
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>RPOD_PYRAE (Q8ZYQ3) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 260

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 50/127 (39%), Positives = 70/127 (55%)
 Frame = +1

Query: 130 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 309
           R  + E  + + K  ++    S+ N+LRRV+I+E+P +AID V + +N+SV+ DE LAHR
Sbjct: 3   RATVVERGEYFLKAVVEGVPPSLVNSLRRVIISELPVMAIDNVVVVNNTSVMYDEMLAHR 62

Query: 310 LGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRST 489
           LGLIPLT+    S+    DC +   D S   CS    L  + T  G T     + DL S 
Sbjct: 63  LGLIPLTTP-LQSLPPYEDCVSGLADPS--ECST--RLTLQVTAEGDT--TIYSGDLASD 115

Query: 490 DPKVCPV 510
            P V PV
Sbjct: 116 RPDVVPV 122
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>RPA5_HUMAN (O15160) DNA-directed RNA polymerase I 40 kDa polypeptide (EC|
           2.7.7.6) (RPA40) (RPA39)
          Length = 346

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 30/66 (45%), Positives = 50/66 (75%)
 Frame = +1

Query: 130 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 309
           RV +  + +   +F++   DA++ANA RR+++AEVPT+A++ V + +N+S++ DE LAHR
Sbjct: 50  RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109

Query: 310 LGLIPL 327
           LGLIP+
Sbjct: 110 LGLIPI 115
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>RPA5_MOUSE (P52432) DNA-directed RNA polymerase I 40 kDa polypeptide (EC|
           2.7.7.6) (RPA40)
          Length = 346

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 29/66 (43%), Positives = 51/66 (77%)
 Frame = +1

Query: 130 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 309
           RV + ++ ++  +F++   DA++ANA RR+++A VPT+A++ V + +N+S++ DE LAHR
Sbjct: 50  RVGVVQMDEDTLEFDMVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSIVQDEILAHR 109

Query: 310 LGLIPL 327
           LGLIP+
Sbjct: 110 LGLIPI 115
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>RPC5_YEAST (P07703) DNA-directed RNA polymerases I and III 40 kDa polypeptide|
           (EC 2.7.7.6) (AC40) (C37)
          Length = 335

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 34/65 (52%), Positives = 46/65 (70%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 312
           V I  L    A F+L + D S+ANA RR+MI+EVP+VA + V   +N+SV+ DE LAHR+
Sbjct: 42  VNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101

Query: 313 GLIPL 327
           GL+PL
Sbjct: 102 GLVPL 106
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>RPOD_THEVO (Q97B93) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 271

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLV------------EIESNS 276
           V+I +L D+Y  FE+     S ANALRR +I ++P +AI+ V             +  +S
Sbjct: 3   VKIFKLSDKYMSFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDAEGNVYDSS 62

Query: 277 SVLNDEFLAHRLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHL--AARATDSGQ 450
             L DE +AHRLGLIPL +   +S+ F   C +C G G C  C+V + +     A+    
Sbjct: 63  LPLFDEMVAHRLGLIPLKTD--LSLNFRDQC-SCGGKG-CSLCTVTYSINKIGPASVMSG 118

Query: 451 TLEVTSTKDLRSTDPKV 501
            ++  S  DL   DP +
Sbjct: 119 DIQAISHPDLVPVDPDI 135
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>RPOD_THEAC (Q9HJD9) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 271

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLV------------EIESNS 276
           V+I +L D+Y +FE+     S ANALRR +I ++P +AI+ V             +  +S
Sbjct: 3   VKIFKLSDKYIRFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDSEGNVYDSS 62

Query: 277 SVLNDEFLAHRLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHL--AARATDSGQ 450
             L DE +AHRLGLIPL +   ++M F   C +C G G C  C+V + +     +T    
Sbjct: 63  LPLFDEMVAHRLGLIPLKTD--LTMNFRDQC-SCGGKG-CSLCTVTYSINKLGPSTVFSS 118

Query: 451 TLEVTSTKDLRSTDPKV 501
            L+  S  DL   D ++
Sbjct: 119 DLQAVSHPDLIPVDGEI 135
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>RPOD_SULSO (P95989) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 265

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
 Frame = +1

Query: 202 NALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSSGAM-SMRFSRDCDAC 378
           NA+RR  +  VP +A+D V    N+S L DE LAHRL LIP  S  A+ + R+  +C  C
Sbjct: 26  NAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMSEEALDTYRWPEECIEC 85

Query: 379 DGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTDPKVCPV 510
               +CE C  + ++ A A +  + +    +KD++S DP V P+
Sbjct: 86  --TENCEKCYTKIYIEAEAPNEPRMI---YSKDIKSEDPSVVPI 124
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>RPOD_PYRKO (Q5JJF4) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 259

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 36/77 (46%), Positives = 47/77 (61%)
 Frame = +1

Query: 136 RIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLG 315
           +I E + +  KF +   D   ANALRR +++EVPT A+D VE   N S L DE +AHRL 
Sbjct: 5   KILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLA 64

Query: 316 LIPLTSSGAMSMRFSRD 366
           +IPLT+      RFS D
Sbjct: 65  MIPLTTP---HERFSLD 78
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>RPOD_PYRAB (Q9V198) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 259

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 47/127 (37%), Positives = 66/127 (51%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 312
           ++I +  D+   F L+  D + ANALRR ++ EVPT A+D VE   N S L DE +AHRL
Sbjct: 4   IKILKKTDDSITFILEGVDVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 63

Query: 313 GLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTD 492
            +IPL +      RF  + DA + D      S+E      A   G    +  + DL+S D
Sbjct: 64  AMIPLKTP---VDRF--ELDALELDDYTVTLSLE------AEGPG----IVYSGDLKSDD 108

Query: 493 PKVCPVD 513
           P V P +
Sbjct: 109 PDVKPAN 115
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>RPOD_PICTO (Q6KZP5) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 271

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 14/153 (9%)
 Frame = +1

Query: 139 IRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLV------------EIESNSSV 282
           I ELKD Y KF +     ++AN++RR +I ++P +AI+ V             +  +S  
Sbjct: 4   IIELKDNYIKFSISGITPAIANSIRRTLINDIPKLAIENVVFHHGEIRDSEGNVYDSSLP 63

Query: 283 LNDEFLAHRLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHL--AARATDSGQTL 456
           L DE +A RLGLIPL +   + M F   C +C+G+G C+ C+V++ +     A      L
Sbjct: 64  LFDEVVALRLGLIPLKTD--LKMNFRDQC-SCNGEG-CDLCTVKYSINKLGPADVFSSDL 119

Query: 457 EVTSTKDLRSTDPKVCPVDQQREYQQALGNVDA 555
              +  DL+  DP + P+ + ++ Q  L   +A
Sbjct: 120 IPINNPDLKPVDPMI-PIVKLKKGQAMLVTCEA 151
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>RPOD_METTH (O26144) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 264

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 2/128 (1%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 312
           + ++E  D    F +        NA+RR+ + EVP +AI+ V +  N + + DE LAHRL
Sbjct: 3   IALKEKTDTEMVFVVSGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDAKMFDEVLAHRL 62

Query: 313 GLIPLTSSG--AMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRS 486
           GL+PL +    A S++   +CD    +  C  CSV   L  +         V  + DL S
Sbjct: 63  GLVPLAADPEFAESLKMPEECDC---EEYCSECSVSLTLRKKGPG------VVYSGDLVS 113

Query: 487 TDPKVCPV 510
             P V PV
Sbjct: 114 ETPAVKPV 121
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>RPOD_PYRHO (O59303) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 259

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 46/127 (36%), Positives = 67/127 (52%)
 Frame = +1

Query: 130 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 309
           +++I +  ++   F L+    + ANALRR ++ EVPT A+D VE   N S L DE +AHR
Sbjct: 3   KIKILKKTEDSITFILEGVSVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62

Query: 310 LGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRST 489
           L +IPL +    + RF  + DA + D      S+E      A   G    +  + DL+S 
Sbjct: 63  LAMIPLKTP---TDRF--ELDALELDDYTVTLSLE------AEGPG----IVYSGDLKSD 107

Query: 490 DPKVCPV 510
           DP V PV
Sbjct: 108 DPDVKPV 114
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>RPOD_SULTO (Q96YW0) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 264

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
 Frame = +1

Query: 196 MANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSSGAMS-MRFSRDCD 372
           + N++RR  I  VP +A+D V    N+S L DE LAHRL +IP +S  A+   R   +C 
Sbjct: 24  LVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLAMIPFSSDEALDHYRPPEECA 83

Query: 373 ACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTDPKVCPV 510
            C    +C+ C    +L   A + G+T+ V S +DL++ DP + P+
Sbjct: 84  EC--KENCDGCYARVYLDVGANE-GETVMVYS-RDLKTDDPAIVPI 125
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>RPOD_METKA (Q8TVB8) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 275

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 46/129 (35%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
 Frame = +1

Query: 130 RVRI---RELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFL 300
           RVR+   R+   E A F +++T A   N +RR +   VPT+ I+ V I  N + + DE L
Sbjct: 5   RVRLYDYRKADVERATFIIEETSAEFVNTIRRALYTLVPTLRIEEVIIYENDTPMYDEML 64

Query: 301 AHRLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDL 480
           AHRLGLIPL             CD C G G CE C V   L                +DL
Sbjct: 65  AHRLGLIPLRVDDIDQFELPDLCD-CGGKG-CEKCQVRAELEVEGPTK------VYARDL 116

Query: 481 RSTDPKVCP 507
           +   P V P
Sbjct: 117 KFDHPDVEP 125
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>RPOD_METJA (Q57648) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 191

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 32/53 (60%), Positives = 40/53 (75%)
 Frame = +1

Query: 169 FELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPL 327
           F LK    S +NA+RR+MI+EVPT AI+ V I  NSS ++DE LAHRLGLIP+
Sbjct: 18  FSLK-APISFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPI 69
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>RPOD_SULAC (P39471) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 264

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
 Frame = +1

Query: 175 LKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSSGAMS-M 351
           L++      N++RR  I  VP +A+D V    N+S L DE LAHRL L+P  S  A+   
Sbjct: 17  LENYPLEFVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLALVPFVSDEALEHY 76

Query: 352 RFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTDPKVCPV 510
           R   +C  C    +C+ C    +L   A D  Q L + S +DL+S D  + PV
Sbjct: 77  RPPEECAEC--KENCDGCYNRVYLDVEAKD--QPLMIYS-RDLKSEDQMITPV 124
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>RPOD_HALSA (Q9HQJ4) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 248

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 27/60 (45%), Positives = 41/60 (68%)
 Frame = +1

Query: 154 DEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTS 333
           D  A+F +++   + AN +RR ++ +VPT++ID V    NSSV+ DE L  RLGL+PLT+
Sbjct: 15  DREARFVVRNITPAFANGIRRAILVDVPTLSIDTVRFVENSSVMFDEQLGLRLGLVPLTT 74
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>RPOD_HALMA (Q00813) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)|
          Length = 259

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 26/67 (38%), Positives = 42/67 (62%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 312
           V   E  +  A+  ++    + AN +RR M+A+VPT +ID V +  N+SV+ +E +  RL
Sbjct: 7   VEFVERGEREARILVRGITPAFANGIRRAMVADVPTFSIDTVRVIENTSVMFNEQIGLRL 66

Query: 313 GLIPLTS 333
           GL+PLT+
Sbjct: 67  GLVPLTT 73
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>RPOA_CARHZ (Q3A9U4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 313

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
 Frame = +1

Query: 127 PRVRIRELKDEYAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIE 267
           P++   EL D Y +F ++  +     ++ N++RR++++ +P  A+  ++IE
Sbjct: 7   PKIETEELNDRYGRFVIEPLERGYGITLGNSMRRILLSSLPGAAVTSIKIE 57
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>RPOA_PORGI (Q7MTP0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 330

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = +1

Query: 112 SYQRFPRVRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           ++Q+   V + E  D  AKFE K  +     ++ NALRR++++ +   AI  ++IE
Sbjct: 5   AFQKPENVLMMETSDSIAKFEFKPLEPGYGITIGNALRRILLSSLEGFAITAIKIE 60
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>RPOA_SYNY3 (P73297) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 314

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = +1

Query: 142 RELKDEYAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEF 297
           R+ + +Y+KF L+  D     ++ NALRRV+++ +P  A+  + I      +N EF
Sbjct: 14  RKNQQQYSKFSLEPLDRGQGTTVGNALRRVLLSNLPGAAVTAIRIAG----VNHEF 65
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>RPOA_MYCGA (Q9RDV6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 325

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
 Frame = +1

Query: 118 QRFPRVRIRELKDE----YAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIESN 273
           Q+F R  I  +K++    Y K+ +K  +     ++ NALRRVM++ +P  ++  ++I+  
Sbjct: 2   QQFLRYNINVIKEDNDKNYGKYIVKPLEKGFGITLGNALRRVMLSHLPGSSVFALKIKG- 60

Query: 274 SSVLNDEFLAHRLGLIP 324
                   ++H  G IP
Sbjct: 61  --------ISHEFGFIP 69
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>XLNR_ASPNG (O42804) Transcriptional activator xlnR|
          Length = 875

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
 Frame = +1

Query: 289 DEFLAHRLGLIPLTSSGAMSMRFSRDCD-------ACDGDGSCEHCSVEFHLAARATDSG 447
           D  +  R  +   +SS  +  R SR CD        CDG   C HC +EF L        
Sbjct: 29  DPLVEARSAVRKTSSSAPVRRRISRACDQCNQLRTKCDGQHPCAHC-IEFGLTCEYARER 87

Query: 448 QTLEVTSTKDL 480
           +     S KDL
Sbjct: 88  KKRGKASKKDL 98
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>RPOA_CLOTE (Q890R0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 315

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
 Frame = +1

Query: 127 PRVRIRELKDE--YAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIES 270
           P++   E+ +   Y KF ++  +     ++ NALRR++++ +P VA++ ++IE+
Sbjct: 7   PKIECIEMTENGSYGKFVVEPLERGYGITLGNALRRILLSSLPGVAVNSIKIEN 60
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>RPOA_BORGA (Q661B8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 344

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +1

Query: 160 YAKFEL----KDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPL 327
           Y KF +    +    ++ N LRRV+++ +   AI  + I+SN+   + + ++    LIP 
Sbjct: 27  YGKFTIYPFERGFGVTIGNTLRRVLLSSIEGYAITAMRIQSNNKDSSSKVVSSEFDLIPG 86

Query: 328 TSSGAMSM 351
            S   + +
Sbjct: 87  VSEDTLEV 94
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>RPOA_STAS1 (Q49ZE2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 314

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
 Frame = +1

Query: 127 PRVRIRELKDE--YAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIE 267
           PR+   E+ ++  + KF ++  +     ++ N+LRR++++ +P  A+  +EIE
Sbjct: 7   PRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIE 59
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>RPOA_STAHJ (Q4L888) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 314

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
 Frame = +1

Query: 127 PRVRIRELKDE--YAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIE 267
           PR+   E+ ++  + KF ++  +     ++ N+LRR++++ +P  A+  +EIE
Sbjct: 7   PRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIE 59
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>RPOA_STAAW (P66707) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 314

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
 Frame = +1

Query: 127 PRVRIRELKDE--YAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIE 267
           PR+   E+ ++  + KF ++  +     ++ N+LRR++++ +P  A+  +EIE
Sbjct: 7   PRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIE 59
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>RPOA_STAAS (Q6G797) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 314

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
 Frame = +1

Query: 127 PRVRIRELKDE--YAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIE 267
           PR+   E+ ++  + KF ++  +     ++ N+LRR++++ +P  A+  +EIE
Sbjct: 7   PRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIE 59
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>RPOA_STAAR (Q6GEK9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 314

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
 Frame = +1

Query: 127 PRVRIRELKDE--YAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIE 267
           PR+   E+ ++  + KF ++  +     ++ N+LRR++++ +P  A+  +EIE
Sbjct: 7   PRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIE 59
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>RPOA_STAAN (P66706) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 314

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
 Frame = +1

Query: 127 PRVRIRELKDE--YAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIE 267
           PR+   E+ ++  + KF ++  +     ++ N+LRR++++ +P  A+  +EIE
Sbjct: 7   PRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIE 59
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>RPOA_STAAM (P66705) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 314

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
 Frame = +1

Query: 127 PRVRIRELKDE--YAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIE 267
           PR+   E+ ++  + KF ++  +     ++ N+LRR++++ +P  A+  +EIE
Sbjct: 7   PRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIE 59
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>RPOA_STAAC (Q5HDY4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 314

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
 Frame = +1

Query: 127 PRVRIRELKDE--YAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIE 267
           PR+   E+ ++  + KF ++  +     ++ N+LRR++++ +P  A+  +EIE
Sbjct: 7   PRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIE 59
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>RPOA_CLOPE (Q9LBW9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 315

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
 Frame = +1

Query: 160 YAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIES 270
           Y KFE++  +     ++ NALRR++++ +P VA   V+I+S
Sbjct: 20  YGKFEIEPLERGYGITLGNALRRILLSSLPGVAPTSVKIDS 60
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>RPOA_VIBVY (Q7MPG4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 330

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEIE
Sbjct: 14  VDIEQISSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIE 62
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>RPOA_VIBVU (Q8DE63) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 330

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEIE
Sbjct: 14  VDIEQISSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIE 62
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>RPOA_VIBPA (Q87SZ0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 330

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEIE
Sbjct: 14  VDIEQISSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIE 62
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>RPOA_STAES (Q8CRI4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 314

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
 Frame = +1

Query: 127 PRVRIRELKDE--YAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIE 267
           PR+   E+ ++  + KF ++  +     ++ N+LRR++++ +P  A+  +EIE
Sbjct: 7   PRIETIEVSEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIE 59
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>RPOA_STAEQ (Q5HM25) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 314

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
 Frame = +1

Query: 127 PRVRIRELKDE--YAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIE 267
           PR+   E+ ++  + KF ++  +     ++ N+LRR++++ +P  A+  +EIE
Sbjct: 7   PRIETIEVSEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIE 59
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>RPOA_XANOR (Q5GWV9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 332

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +1

Query: 136 RIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           +I  L D  AK  ++  +     ++ NALRRV+++ +P  AI  VEI+
Sbjct: 15  QIERLTDNRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVEID 62
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>RPOA_XANC8 (Q4URG3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 332

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +1

Query: 136 RIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           +I  L D  AK  ++  +     ++ NALRRV+++ +P  AI  VEI+
Sbjct: 15  QIERLTDNRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVEID 62
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>RPOA_XANC5 (Q3BWV9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 332

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +1

Query: 136 RIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           +I  L D  AK  ++  +     ++ NALRRV+++ +P  AI  VEI+
Sbjct: 15  QIERLTDNRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVEID 62
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>RPOA_BORBU (O51455) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 345

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +1

Query: 160 YAKFEL----KDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPL 327
           Y KF +    +    ++ N LRRV+++ +   AI  + ++SN+   + + ++    LIP 
Sbjct: 28  YGKFTIYPFERGFGITIGNTLRRVLLSSIEGYAITAMRVQSNNKDSSSKVVSSEFDLIPG 87

Query: 328 TSSGAMSM 351
            S   + +
Sbjct: 88  VSEDTLEI 95
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>RPOA_VIBCH (Q9KP08) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 330

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEIE
Sbjct: 14  VDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIE 62
to top
>RPOA_XANCP (P0A0Y1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 331

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +1

Query: 136 RIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           +I  L D  AK  ++  +     ++ NALRRV+++ +P  AI  VEI+
Sbjct: 14  QIERLTDNRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVEID 61
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>RPOA_XANAC (P0A0Y2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 331

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +1

Query: 136 RIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           +I  L D  AK  ++  +     ++ NALRRV+++ +P  AI  VEI+
Sbjct: 14  QIERLTDNRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVEID 61
to top
>RPOA_BLOFL (Q7VQC3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 331

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           + I ++ + ++K  L+  +     ++ NALRR++++ +P  AI  VEIE
Sbjct: 14  INIEKISEIHSKITLEPLERGFGHTLGNALRRILLSSMPGCAITEVEIE 62
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>RPOA_VIBF1 (Q5E889) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEIE
Sbjct: 14  VDIEQVSTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIE 62
to top
>RPOA_HAEDU (Q7VKF8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VNIEQISSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVAEVEID 62
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>RX1_CHICK (Q9PVY0) Retinal homeobox protein Rx1 (cRax1)|
          Length = 228

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 43  NPCGGDPPHLRRPGGMERSAAGASYQRFPRVRIRELKDEYAKFELKDTD 189
           N C GD   LR+PG  E +   A+ +  P+ + R  +  +  ++L + +
Sbjct: 4   NKCEGDLGELRKPGDSEGTPPAAAEEEQPKKKHRRNRTTFTTYQLHELE 52
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>RPOA_SCEOB (P19587) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit) (Fragment)
          Length = 129

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = +1

Query: 193 SMANALRRVMIAEVPTVAIDLVEIE 267
           ++ANALRR ++AE+  +AI  +EIE
Sbjct: 39  TVANALRRTLLAELSNIAITHLEIE 63
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>RPOA_WIGBR (Q8D1Y8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 328

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQISKTHAKITLEPLERGFGHTLGNALRRILLSSMPGYAVTEVEID 62
to top
>RPOA_BACFR (Q64NN5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 330

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = +1

Query: 112 SYQRFPRVRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           ++Q+  +V + E   ++ KFE +  +     ++ NALRR++++ +   AI  + IE
Sbjct: 5   AFQKPDKVLMLEADAKFGKFEFRPLEPGFGITVGNALRRILLSSLEGFAITTIRIE 60
to top
>RPOA_BACFN (Q5L8D6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 330

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = +1

Query: 112 SYQRFPRVRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           ++Q+  +V + E   ++ KFE +  +     ++ NALRR++++ +   AI  + IE
Sbjct: 5   AFQKPDKVLMLEADAKFGKFEFRPLEPGFGITVGNALRRILLSSLEGFAITTIRIE 60
to top
>WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)|
          Length = 641

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 465 LHQGPPLHRPQGLPCRPAKGIPAGP 539
           L  GPP  RP G P  P  G+P GP
Sbjct: 458 LPPGPPPGRPPGPPPGPPPGLPPGP 482
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>WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)|
          Length = 641

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 465 LHQGPPLHRPQGLPCRPAKGIPAGP 539
           L  GPP  RP G P  P  G+P GP
Sbjct: 458 LPPGPPPGRPPGPPPGPPPGLPPGP 482
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>WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 domain-binding|
           protein SNP70) (Npw38-binding protein) (NpwBP)
          Length = 641

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 465 LHQGPPLHRPQGLPCRPAKGIPAGP 539
           L  GPP  RP G P  P  G+P GP
Sbjct: 458 LPPGPPPGRPPGPPPGPPPGLPPGP 482
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>RPOA_YERPS (Q664U6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_YERPE (Q8ZJ87) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_SHISS (Q3YWW4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_SHIFL (P0A7Z9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_SHIDS (Q32B56) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_SHIBS (Q31VY1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_SALTY (P0A7Z7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_SALTI (P0A7Z8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_SALPA (Q5PK10) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_SALCH (Q57J56) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_PHOLL (Q7MYH5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_IDILO (Q5QXV8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQISPTHAKVTLEPLERGFGYTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_ERWCT (Q6CZZ5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_ECOLI (P0A7Z4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_ECOL6 (P0A7Z5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_ECO57 (P0A7Z6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 133 VRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 267
           V I ++   +AK  L+  +     ++ NALRR++++ +P  A+  VEI+
Sbjct: 14  VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62
to top
>RPOA_BACTN (Q8A4A2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 330

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
 Frame = +1

Query: 112 SYQRFPRVRIRELKDEYAKFELKDTDA----SMANALRRVMIAE-----VPTVAIDLVEI 264
           ++Q+  +V + E    + KFE +  +     ++ NALRR++++      + T+ ID VE 
Sbjct: 5   AFQKPDKVLMLEADSRFGKFEFRPLEPGFGITVGNALRRILLSSLEGFAITTIRIDGVEH 64

Query: 265 ESNS 276
           E +S
Sbjct: 65  EFSS 68
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>RPOA_THEMA (Q9X1I2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 336

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 8/48 (16%)
 Frame = +1

Query: 130 RVRIRELKDE----YAKFELKDTDASMA----NALRRVMIAEVPTVAI 249
           ++++ E ++E    Y++F L   +   A    NALRRV+++ +P++AI
Sbjct: 9   KLKVEEEREERDYYYSRFSLSPLERGYAITIGNALRRVLLSSIPSLAI 56
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>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)|
          Length = 640

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 465 LHQGPPLHRPQGLPCRPAKGIPAGP 539
           L  GPP  RP G P  P  G+P GP
Sbjct: 424 LPPGPPPGRPPGPPPGPPPGLPPGP 448


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,536,148
Number of Sequences: 219361
Number of extensions: 724155
Number of successful extensions: 3570
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 3420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3556
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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