ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart24f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IP3KC_HUMAN (Q96DU7) Inositol-trisphosphate 3-kinase C (EC 2.7.1... 29 8.6
2PIT_BUCAP (Q8K903) Low-affinity inorganic phosphate transporter 29 8.6
3INADL_MOUSE (Q63ZW7) InaD-like protein (Inadl protein) (Pals1-as... 29 8.6
4COL14_CAEEL (P18834) Cuticle collagen 14 29 8.6

>IP3KC_HUMAN (Q96DU7) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol|
           1,4,5-trisphosphate 3-kinase C) (InsP 3-kinase C)
           (IP3K-C)
          Length = 683

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
 Frame = +1

Query: 157 RGSDCAVGLRTGEAG------RRAAELSSAQRRLQPGRLKPSPHGLPGGAVPAGR 303
           R   C   L   EAG      R   E     RR QPG+ +P     PG   PAGR
Sbjct: 2   RRCPCRGSLNEAEAGALPAAARMGLEAPRGGRRRQPGQQRPG----PGAGAPAGR 52



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>PIT_BUCAP (Q8K903) Low-affinity inorganic phosphate transporter|
          Length = 493

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 489 ISCSPILGLLMSDGYGIRLSLIRDMYLLW 575
           I  S + G ++SDG GI++S I+++ L W
Sbjct: 440 ILSSSVAGAMLSDGDGIQISTIKNIALAW 468



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>INADL_MOUSE (Q63ZW7) InaD-like protein (Inadl protein) (Pals1-associated tight|
           junction protein) (Protein associated to tight
           junctions) (Channel-interacting PDZ domain-containing
           protein)
          Length = 1834

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 231 EEASTRQTETEPPWAPWRRGTGRPE 305
           E +S+R+T  EPP  P R G+ +PE
Sbjct: 462 EHSSSRETVAEPPKVPERAGSPKPE 486



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>COL14_CAEEL (P18834) Cuticle collagen 14|
          Length = 345

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = +1

Query: 190 GEAGRRAAELSSAQRRLQPGRLKPSPHGLPGGAVPAGRS 306
           GE G    E+  A R   PGR  P P G PG A P G +
Sbjct: 258 GEPGTYKTEVGPAGRAGAPGR--PGPPGQPGPAGPPGEN 294


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,180,314
Number of Sequences: 219361
Number of extensions: 1066807
Number of successful extensions: 3991
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3989
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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