>VE2_HPV12 (P36782) Regulatory protein E2|
          Length = 494

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = -1

Query: 436 ARSHSRGRPLRLSTNFHGSGPDEPRSGRKESAKSPPSTTRRVAARGEAGRKRGLGSSMQR 257
           +RS SRGR         G G     + ++  ++S  S TR+ + RGE GR    G   +R
Sbjct: 305 SRSQSRGRG--------GRGSSTDTTTKRRRSRSSSSNTRKRSQRGERGRGERGGRGKRR 356

Query: 256 SSLGRWMKQPRRS 218
                    P+RS
Sbjct: 357 DRSSSTSPTPKRS 369

>VE2_HPV25 (P36787) Regulatory protein E2|
          Length = 502

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = -1

Query: 445 SADARSHSRGRPLRLSTNFHGSGPDEPRSGRKESAKSPPSTT------RRVAARGEAGRK 284
           S  ++  SR R  R ++   G GP  P +   + A   PSTT      R   +R  AG  
Sbjct: 295 SQSSKRRSRSRSRRKTSATRGRGPGSPTTTTSDRAARSPSTTSSATSQRSQRSRSRAGSS 354

Query: 283 RG 278
           RG
Sbjct: 355 RG 356

>ATU_DROME (Q94546) Another transcription unit protein|
          Length = 725

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
 Frame = -1

Query: 454 TGCSADARSHSRG-------RPLRLSTNFHGSGPDEPRSGRKESAKSPPSTTRRVAARGE 296
           +G S  +RS SR         P    +   GSG D  RSG + S     S + R A  G 
Sbjct: 10  SGSSGSSRSGSRSVTPQGGSAPGSQRSRRSGSGSDRSRSGSRSSRSRSGSGSPRSARSGS 69

Query: 295 AGRKRGLGSSMQRSSLGRWMKQPRRSG 215
           A  +    S   RS   R     RRSG
Sbjct: 70  AESRHSQLSGSARSKRSR-SAHSRRSG 95

>VE2_HPV23 (P50769) Regulatory protein E2|
          Length = 431

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 25/83 (30%), Positives = 33/83 (39%)
 Frame = -1

Query: 460 SATGCSADARSHSRGRPLRLSTNFHGSGPDEPRSGRKESAKSPPSTTRRVAARGEAGRKR 281
           S T  S+  RS S  R          S P      +K   K   +  R+  +R  +  +R
Sbjct: 217 STTSLSSPQRSPSTNRRYGRKA----SSPTATTRRQKRQGKETLTRRRKTRSRSRSREQR 272

Query: 280 GLGSSMQRSSLGRWMKQPRRSGQ 212
           G G   QRSS     K PRR G+
Sbjct: 273 G-GRETQRSSSRGASKSPRRGGR 294

>HORN_HUMAN (Q86YZ3) Hornerin|
          Length = 2850

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
 Frame = -1

Query: 466  HGSATGCSADARSHSRGRPLRLSTNFHGSGPDE---PRSGRKESAKSPPSTTRRVAARGE 296
            HGS++G S+    H  G    L    HGSG  +   P  GR  S     S+     +   
Sbjct: 1443 HGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSG 1502

Query: 295  AGRKRGLGSSMQRSSLGRWMKQPRRSGQ 212
                RG   S    S G   ++  RSGQ
Sbjct: 1503 WSSSRGPYESGSSHSSGLGHRE-SRSGQ 1529



 Score = 29.6 bits (65), Expect = 5.9
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
 Frame = -1

Query: 466  HGSATGCSADARSHSRGRPLRLSTNFHGSGPDE---PRSGRKESAKSPPSTTRRVAARGE 296
            HGS++G S+    H  G    L    HGSG  +   P  GR  S     S+     +   
Sbjct: 2383 HGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSG 2442

Query: 295  AGRKRGLGSSMQRSSLGRWMKQPRRSGQ 212
                RG   S    S G   ++  RSGQ
Sbjct: 2443 WSSSRGPYESGSGHSSGLGHRE-SRSGQ 2469



 Score = 29.6 bits (65), Expect = 5.9
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = -1

Query: 466 HGSATGCSADARSHSRGRPLRLSTNFHGSGPDEPRSGRKESAKS--PPSTTRRVAARGEA 293
           HGS +G S+ +  H     L  S   HGSG  +     ++ + S   PS  R  ++ G +
Sbjct: 729 HGSRSGQSSRSEQHGSSSGLSSSYGQHGSGSHQSSGHGRQGSGSGHSPSRVRHGSSSGHS 788

Query: 292 GRKRGLGSSMQRSS 251
                 GS    SS
Sbjct: 789 SSHGQHGSGTSCSS 802



 Score = 29.3 bits (64), Expect = 7.7
 Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
 Frame = -1

Query: 466  HGSATGCSADARSHSRGRPLRLSTNFHGSGPDE---PRSGRKESAKSPPS---------- 326
            HGS++G S+    H  G    L    HGSG  +   P  GR  S     S          
Sbjct: 1913 HGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYGPYGSGSG 1972

Query: 325  -TTRRVAARGEAGRKRGLGSSMQRS 254
             ++ R      +G   GLG    RS
Sbjct: 1973 WSSSRGPYESGSGHSSGLGHRESRS 1997



 Score = 29.3 bits (64), Expect = 7.7
 Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
 Frame = -1

Query: 466  HGSATGCSADARSHSRGRPLRLSTNFHGSGPDE---PRSGRKESAKSPPS---------- 326
            HGS++G S+    H  G    L    HGSG  +   P  GR  S     S          
Sbjct: 973  HGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYGPYRSGSG 1032

Query: 325  -TTRRVAARGEAGRKRGLGSSMQRS 254
             ++ R      +G   GLG    RS
Sbjct: 1033 WSSSRGPYESGSGHSSGLGHRESRS 1057

>MYCL2_HUMAN (P12525) L-myc-2 protein|
          Length = 357

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
 Frame = +3

Query: 378 PDPWKFVDRRSGRPLLWD-------LASAEQPVADPWKVLDCRNGRLLLRNRVSRELAVA 536
           P PW +V  R   P LW         A  E    D WK  D     L+ R+ +    +  
Sbjct: 37  PPPWTWVRSREPSPQLWSPGTWPVGCAGDETESQDYWKAWDANYASLIRRDCMWSGFSTQ 96

Query: 537 DPL 545
           +PL
Sbjct: 97  EPL 99

>TSC1_HUMAN (Q92574) Hamartin (Tuberous sclerosis 1 protein)|
          Length = 1164

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 379  GPDEPRSGRKESAKSPPSTTRRVAARGEAGRKRGLGSSMQRSSLGRWMKQPRR 221
            G +E  SG     K+P    R  +ARG +G + G GSS   S L    K P +
Sbjct: 1006 GHNEEASGHNGETKTP----RPSSARGSSGSRGGGGSSSSSSELSTPEKPPHQ 1054

>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 496

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = -1

Query: 409 LRLSTNFHGSGPDEPRSGRKESAKSPPSTTRRVAARGEAGRKRGLGS--------SMQRS 254
           L+ ST   G   D  R  RK S      T RR  +R + G +RG G         S +R 
Sbjct: 43  LKSSTGGGGGEDDNDRKKRKRSRSRDRDTRRRSRSR-DRGERRGGGGGGDRDRSRSRERR 101

Query: 253 SLGRWMKQPRRSG 215
             G    +PRR G
Sbjct: 102 RGGGGRDEPRRRG 114

>NOP14_SCHPO (O43051) Probable nucleolar complex protein 14|
          Length = 827

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 319 RRV-AARGEAGRKRGLGSSMQRSSLGRWMKQPRRSGQV 209
           RRV    G+ G  RG+G  ++R ++G  +K+  RSG +
Sbjct: 68  RRVKGTEGKPGVSRGVGEELRRRTIGAELKKRNRSGAI 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,427,129
Number of Sequences: 219361
Number of extensions: 715796
Number of successful extensions: 3586
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3576
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)