ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart24e05 |
|---|---|
| Clone Library Name | barley_pub |
>AVT1_YEAST (P47082) Vacuolar amino acid transporter 1| Length = 602 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +1 Query: 268 KPVPAPDAGAAFVLESKGTWWHAGFHLTTAIVGPTVLTLPYALRGMGWALGITTLSLIAA 447 K V D +L + T F+ ++G +L LP L+ GW +G+T L++ A Sbjct: 191 KRVEGVDGKVVTLLAGQSTAPQTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFAL 250 Query: 448 VTFYEYSLMSRVLD 489 TF L+SR LD Sbjct: 251 ATFCTAELLSRCLD 264
>VIAAT_RAT (O35458) Vesicular inhibitory amino acid transporter (GABA and| glycine transporter) (Vesicular GABA transporter) (rGVAT) (Solute carrier family 32 member 1) Length = 525 Score = 35.0 bits (79), Expect = 0.15 Identities = 21/48 (43%), Positives = 28/48 (58%) Frame = +1 Query: 316 KGTWWHAGFHLTTAIVGPTVLTLPYALRGMGWALGITTLSLIAAVTFY 459 K T W AG+++T AI G VL LPYA+ G+ LG+ + A V Y Sbjct: 115 KITAWEAGWNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCY 161
>VIAAT_MOUSE (O35633) Vesicular inhibitory amino acid transporter (GABA and| glycine transporter) (Vesicular GABA transporter) (mVIAAT) (mVGAT) (Solute carrier family 32 member 1) Length = 525 Score = 35.0 bits (79), Expect = 0.15 Identities = 21/48 (43%), Positives = 28/48 (58%) Frame = +1 Query: 316 KGTWWHAGFHLTTAIVGPTVLTLPYALRGMGWALGITTLSLIAAVTFY 459 K T W AG+++T AI G VL LPYA+ G+ LG+ + A V Y Sbjct: 115 KITAWEAGWNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCY 161
>VIAAT_MACFA (Q95KE2) Vesicular inhibitory amino acid transporter (GABA and| glycine transporter) (Vesicular GABA transporter) (Solute carrier family 32 member 1) Length = 525 Score = 35.0 bits (79), Expect = 0.15 Identities = 21/48 (43%), Positives = 28/48 (58%) Frame = +1 Query: 316 KGTWWHAGFHLTTAIVGPTVLTLPYALRGMGWALGITTLSLIAAVTFY 459 K T W AG+++T AI G VL LPYA+ G+ LG+ + A V Y Sbjct: 115 KITAWEAGWNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCY 161
>VIAAT_HUMAN (Q9H598) Vesicular inhibitory amino acid transporter (GABA and| glycine transporter) (Vesicular GABA transporter) (hVIAAT) (Solute carrier family 32 member 1) Length = 525 Score = 35.0 bits (79), Expect = 0.15 Identities = 21/48 (43%), Positives = 28/48 (58%) Frame = +1 Query: 316 KGTWWHAGFHLTTAIVGPTVLTLPYALRGMGWALGITTLSLIAAVTFY 459 K T W AG+++T AI G VL LPYA+ G+ LG+ + A V Y Sbjct: 115 KITAWEAGWNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCY 161
>YSPK_CAEEL (Q19425) Hypothetical protein F13H10.3 in chromosome IV| Length = 615 Score = 32.7 bits (73), Expect = 0.76 Identities = 14/40 (35%), Positives = 25/40 (62%) Frame = +1 Query: 340 FHLTTAIVGPTVLTLPYALRGMGWALGITTLSLIAAVTFY 459 F + ++G ++L +P+AL+ G LGI + +AA+ FY Sbjct: 170 FSIWNTMMGTSLLAMPWALQQAGLVLGIIIMLSMAAICFY 209
>S36A1_HUMAN (Q7Z2H8) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 476 Score = 32.3 bits (72), Expect = 0.99 Identities = 17/71 (23%), Positives = 32/71 (45%) Frame = +1 Query: 280 APDAGAAFVLESKGTWWHAGFHLTTAIVGPTVLTLPYALRGMGWALGITTLSLIAAVTFY 459 +P + F + TW+ HL +G +L LP A++ G +G +L +I V + Sbjct: 34 SPGSYQRFGQSNSTTWFQTLIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVH 93 Query: 460 EYSLMSRVLDH 492 ++ + H Sbjct: 94 CMGILVKCAHH 104
>S36A1_RAT (Q924A5) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) (Lysosomal amino acid transporter 1) (LYAAT-1) (Neutral amino acid/proton symporter) Length = 475 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = +1 Query: 313 SKGTWWHAGFHLTTAIVGPTVLTLPYALRGMGWALGITTLSLIAAVTFYEYSLMSRVLDH 492 S TW+ HL +G +L LP A++ G LG +L +I V + ++ + H Sbjct: 44 SSMTWFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKCAHH 103
>S36A1_MOUSE (Q8K4D3) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 475 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = +1 Query: 313 SKGTWWHAGFHLTTAIVGPTVLTLPYALRGMGWALGITTLSLIAAVTFYEYSLMSRVLDH 492 S TW+ HL +G +L LP A++ G LG +L +I V + ++ + H Sbjct: 44 SSMTWFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKCAHH 103
>ISPZ_BUCBP (Q89AL3) Probable intracellular septation protein| Length = 178 Score = 30.4 bits (67), Expect = 3.8 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%) Frame = -1 Query: 160 VIYRHDGHTGWDVNLISRLI------NTVGARYGLITVTHTNTVGSNSRAWRGVSVLWS 2 + Y + + W V +I LI N + + L+ + NT+ + WR +S+ WS Sbjct: 66 LFYHNSSYIKWKVTIIYFLISIVFLINYLFIKNNLLNIIFKNTIQLSKNVWRKLSLFWS 124
>AUX1_ARATH (Q96247) Auxin transporter protein 1 (Auxin influx carrier protein| 1) (Polar auxin transport inhibitor resistant protein 1) Length = 485 Score = 30.4 bits (67), Expect = 3.8 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 13/94 (13%) Frame = +1 Query: 319 GTWWHAGFHLTTAIVGPTVLTLPYALRGMGWALGITT---LSLIAAVTFYEYSLMSRVLD 489 G+ W A F + V +LTLPY+ +G GI L+ + T Y S++ Sbjct: 46 GSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIVLQIFYGLLGSWTAYLISVL----- 100 Query: 490 HCEARGRRH----------IRFRELAADVLGSGW 561 + E R R+ I++ E+ +LGS W Sbjct: 101 YVEYRARKEKEGKSFKNHVIQWFEVLDGLLGSYW 134
>YIHR_ECOLI (P32139) Hypothetical protein yihR| Length = 308 Score = 30.4 bits (67), Expect = 3.8 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -1 Query: 175 LVVTAVIYRHDGHTGWDVNLISRLINTVGARYGL 74 ++ + V+Y + HTG V + S+ I TV A YG+ Sbjct: 133 MLASQVVYSLNAHTGLSVEIASQNIGTVAAPYGV 166
>RCEM_RHORU (P10718) Reaction center protein M chain (Photosynthetic reaction| center M subunit) Length = 305 Score = 30.0 bits (66), Expect = 4.9 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 277 PAPDAGAAFVLESKGTWWH-AGFHLTTAIV 363 PA + G F ++G WW AGF LTT+I+ Sbjct: 96 PAAEYGLGFAPLAEGGWWQIAGFFLTTSIL 125
>LAX4_MEDTR (Q8L884) Auxin transporter-like protein 4 (AUX1-like protein 4)| (MtLAX4) Length = 482 Score = 29.3 bits (64), Expect = 8.4 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 13/94 (13%) Frame = +1 Query: 319 GTWWHAGFHLTTAIVGPTVLTLPYALRGMGWALGIT---TLSLIAAVTFYEYSLMSRVLD 489 G+ W A F + V +LTLPY+ +G GI LI + T Y S++ Sbjct: 46 GSVWDAWFSCASNQVAQVLLTLPYSFSQLGMVSGIVFQIFYGLIGSWTAYLISVL----- 100 Query: 490 HCEARGRRH----------IRFRELAADVLGSGW 561 + E R R+ I++ E+ +LG W Sbjct: 101 YVEYRARKEKENVNFKNHVIQWFEVLDGLLGRYW 134
>PTPA1_ASPFU (Q4WMU5) Serine/threonine-protein phosphatase 2A activator 1 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1) (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl phosphatase activator 1) Length = 473 Score = 29.3 bits (64), Expect = 8.4 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Frame = -3 Query: 419 PRAQPIPRSAYGSVS---TVGPTI-AVVRWNPACHHVPLDSSTKAAPASGAGT 273 P A P P SA+ S + + GP + + + P+ P ++T+AAP +GAGT Sbjct: 359 PNAVPPPTSAHMSTTQSQSRGPAVPSAGQTPPSGTRAPWATATQAAPPAGAGT 411
>FLIP_PECCC (P34200) Flagellar biosynthetic protein fliP (Flagellar| biosynthetic protein mopC) Length = 258 Score = 29.3 bits (64), Expect = 8.4 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 367 PTVLTLPYALRGMGWALGITTLSLIAAVTFYEYSLM 474 P ++T P G W L + TL L+ ++TF +L+ Sbjct: 37 PGIVTQPLPNGGQSWTLSVQTLVLLTSLTFLPAALL 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,855,951 Number of Sequences: 219361 Number of extensions: 833718 Number of successful extensions: 2751 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2674 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2749 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
