ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart24e05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475979.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1446 Score = 311 bits (157), Expect = 1e-81 Identities = 265/301 (88%) Strand = Plus / Plus Query: 277 cccgcccccgacgccggcgccgccttcgtgctggagtccaaagggacatggtggcacgcg 336 |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct: 130 cccgccgccgacgccggcgccgccttcgtgctcgagtccaaagggaagtggtggcacgcc 189 Query: 337 gggttccacctgacgacggcgatcgtggggccgacggtgctgacgctgccgtacgcgctg 396 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 190 gggttccacctgacgacggcgatcgtggggccgacggtgctgacgctcccgtacgcgctg 249 Query: 397 cgggggatgggctgggctctcggcatcaccacgctctccctcatcgctgccgtcaccttc 456 ||||||||||| ||||| |||||| | ||||| || | |||| |||||||||||| Sbjct: 250 cgggggatggggtgggcgctcggcctggtggcgctcaccgccgtcgccgccgtcaccttc 309 Query: 457 tacgagtactccctcatgtcccgcgtactcgaccactgcgaggcgcgcggccgcaggcac 516 |||| |||| |||||||||| | || ||||||||||||||||| | ||||||| | ||| Sbjct: 310 tacgcctactacctcatgtccagggtcctcgaccactgcgaggcccacggccgccgccac 369 Query: 517 atccgcttccgcgagctcgccgccgacgtccttggctccgggtggatgttttacttcgtg 576 |||||||||||||||||||||||||||||||| || || || ||| |||| ||||| ||| Sbjct: 370 atccgcttccgcgagctcgccgccgacgtcctcggatctggatgggtgttctacttggtg 429 Query: 577 g 577 | Sbjct: 430 g 430
>dbj|AK106883.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-F05, full insert sequence Length = 1760 Score = 311 bits (157), Expect = 1e-81 Identities = 265/301 (88%) Strand = Plus / Plus Query: 277 cccgcccccgacgccggcgccgccttcgtgctggagtccaaagggacatggtggcacgcg 336 |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct: 209 cccgccgccgacgccggcgccgccttcgtgctcgagtccaaagggaagtggtggcacgcc 268 Query: 337 gggttccacctgacgacggcgatcgtggggccgacggtgctgacgctgccgtacgcgctg 396 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 269 gggttccacctgacgacggcgatcgtggggccgacggtgctgacgctcccgtacgcgctg 328 Query: 397 cgggggatgggctgggctctcggcatcaccacgctctccctcatcgctgccgtcaccttc 456 ||||||||||| ||||| |||||| | ||||| || | |||| |||||||||||| Sbjct: 329 cgggggatggggtgggcgctcggcctggtggcgctcaccgccgtcgccgccgtcaccttc 388 Query: 457 tacgagtactccctcatgtcccgcgtactcgaccactgcgaggcgcgcggccgcaggcac 516 |||| |||| |||||||||| | || ||||||||||||||||| | ||||||| | ||| Sbjct: 389 tacgcctactacctcatgtccagggtcctcgaccactgcgaggcccacggccgccgccac 448 Query: 517 atccgcttccgcgagctcgccgccgacgtccttggctccgggtggatgttttacttcgtg 576 |||||||||||||||||||||||||||||||| || || || ||| |||| ||||| ||| Sbjct: 449 atccgcttccgcgagctcgccgccgacgtcctcggatctggatgggtgttctacttggtg 508 Query: 577 g 577 | Sbjct: 509 g 509
>ref|NM_192846.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1551 Score = 291 bits (147), Expect = 1e-75 Identities = 210/231 (90%) Strand = Plus / Plus Query: 318 agggacatggtggcacgcggggttccacctgacgacggcgatcgtggggccgacggtgct 377 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 agggacgtggtggcacgccgggttccacctgacgacggcgatcgtggggccgacggtgct 251 Query: 378 gacgctgccgtacgcgctgcgggggatgggctgggctctcggcatcaccacgctctccct 437 ||||||||||||||||||||| |||||||| ||||| || || ||||| |||| || Sbjct: 252 gacgctgccgtacgcgctgcgcgggatggggtgggcgctgggactcaccgtgctcaccgc 311 Query: 438 catcgctgccgtcaccttctacgagtactccctcatgtcccgcgtactcgaccactgcga 497 | ||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 312 cgtcggcgccgtcaccttctacgagtactccctcatgtcccgcgtcctcgagcactgcga 371 Query: 498 ggcgcgcggccgcaggcacatccgcttccgcgagctcgccgccgacgtcct 548 ||| ||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 372 ggcccgcggccgccgccacatccgcttccgcgagctcgccgccgacgtcct 422 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 277 cccgcccccgacgccggcgccgccttcgtgctggagtccaaagg 320 |||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 49 cccgccgccgacgccggcgccgccttcgtgctcgagtccaaagg 92 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 553 tccgggtggatgttttacttcgtgg 577 ||||||||||||||||||||||||| Sbjct: 511 tccgggtggatgttttacttcgtgg 535 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 208 gcgttcgacgccgaggccggcg 229 |||||||||||||||||||||| Sbjct: 13 gcgttcgacgccgaggccggcg 34
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 291 bits (147), Expect = 1e-75 Identities = 210/231 (90%) Strand = Plus / Minus Query: 318 agggacatggtggcacgcggggttccacctgacgacggcgatcgtggggccgacggtgct 377 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 24754498 agggacgtggtggcacgccgggttccacctgacgacggcgatcgtggggccgacggtgct 24754439 Query: 378 gacgctgccgtacgcgctgcgggggatgggctgggctctcggcatcaccacgctctccct 437 ||||||||||||||||||||| |||||||| ||||| || || ||||| |||| || Sbjct: 24754438 gacgctgccgtacgcgctgcgcgggatggggtgggcgctgggactcaccgtgctcaccgc 24754379 Query: 438 catcgctgccgtcaccttctacgagtactccctcatgtcccgcgtactcgaccactgcga 497 | ||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 24754378 cgtcggcgccgtcaccttctacgagtactccctcatgtcccgcgtcctcgagcactgcga 24754319 Query: 498 ggcgcgcggccgcaggcacatccgcttccgcgagctcgccgccgacgtcct 548 ||| ||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 24754318 ggcccgcggccgccgccacatccgcttccgcgagctcgccgccgacgtcct 24754268 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 277 cccgcccccgacgccggcgccgccttcgtgctggagtccaaagg 320 |||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 24754641 cccgccgccgacgccggcgccgccttcgtgctcgagtccaaagg 24754598 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 553 tccgggtggatgttttacttcgtgg 577 ||||||||||||||||||||||||| Sbjct: 24753896 tccgggtggatgttttacttcgtgg 24753872 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 191 aggccatggcgcctgccgcgttcgacgccgaggccggcg 229 |||| ||||||| || |||||||||||||||||||||| Sbjct: 24754694 aggcgatggcgcacgcggcgttcgacgccgaggccggcg 24754656 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 ccccgcccccgacgccggcg 295 |||||||||||||||||||| Sbjct: 650542 ccccgcccccgacgccggcg 650523
>dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0407B12 Length = 148762 Score = 291 bits (147), Expect = 1e-75 Identities = 210/231 (90%) Strand = Plus / Minus Query: 318 agggacatggtggcacgcggggttccacctgacgacggcgatcgtggggccgacggtgct 377 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 123075 agggacgtggtggcacgccgggttccacctgacgacggcgatcgtggggccgacggtgct 123016 Query: 378 gacgctgccgtacgcgctgcgggggatgggctgggctctcggcatcaccacgctctccct 437 ||||||||||||||||||||| |||||||| ||||| || || ||||| |||| || Sbjct: 123015 gacgctgccgtacgcgctgcgcgggatggggtgggcgctgggactcaccgtgctcaccgc 122956 Query: 438 catcgctgccgtcaccttctacgagtactccctcatgtcccgcgtactcgaccactgcga 497 | ||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 122955 cgtcggcgccgtcaccttctacgagtactccctcatgtcccgcgtcctcgagcactgcga 122896 Query: 498 ggcgcgcggccgcaggcacatccgcttccgcgagctcgccgccgacgtcct 548 ||| ||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 122895 ggcccgcggccgccgccacatccgcttccgcgagctcgccgccgacgtcct 122845 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 277 cccgcccccgacgccggcgccgccttcgtgctggagtccaaagg 320 |||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 123218 cccgccgccgacgccggcgccgccttcgtgctcgagtccaaagg 123175 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 553 tccgggtggatgttttacttcgtgg 577 ||||||||||||||||||||||||| Sbjct: 122473 tccgggtggatgttttacttcgtgg 122449 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 191 aggccatggcgcctgccgcgttcgacgccgaggccggcg 229 |||| ||||||| || |||||||||||||||||||||| Sbjct: 123271 aggcgatggcgcacgcggcgttcgacgccgaggccggcg 123233
>gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05, complete sequence Length = 108479 Score = 246 bits (124), Expect = 7e-62 Identities = 199/224 (88%) Strand = Plus / Plus Query: 325 tggtggcacgcggggttccacctgacgacggcgatcgtggggccgacggtgctgacgctg 384 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11553 tggtggcacgccgggttccacctgacgacggcgatcgtggggccgacggtgctgacgctc 11612 Query: 385 ccgtacgcgctgcgggggatgggctgggctctcggcatcaccacgctctccctcatcgct 444 ||||||||||||||||||||||| ||||| |||||| | ||||| || | |||| Sbjct: 11613 ccgtacgcgctgcgggggatggggtgggcgctcggcctggtggcgctcaccgccgtcgcc 11672 Query: 445 gccgtcaccttctacgagtactccctcatgtcccgcgtactcgaccactgcgaggcgcgc 504 |||||||||||||||| |||| |||||||||| | || ||||||||||||||||| | | Sbjct: 11673 gccgtcaccttctacgcctactacctcatgtccagggtcctcgaccactgcgaggcccac 11732 Query: 505 ggccgcaggcacatccgcttccgcgagctcgccgccgacgtcct 548 |||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 11733 ggccgccgccacatccgcttccgcgagctcgccgccgacgtcct 11776 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 277 cccgcccccgacgccggcgccgccttcgtgctggagtccaaagg 320 |||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 11412 cccgccgccgacgccggcgccgccttcgtgctcgagtccaaagg 11455
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 246 bits (124), Expect = 7e-62 Identities = 199/224 (88%) Strand = Plus / Plus Query: 325 tggtggcacgcggggttccacctgacgacggcgatcgtggggccgacggtgctgacgctg 384 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29001498 tggtggcacgccgggttccacctgacgacggcgatcgtggggccgacggtgctgacgctc 29001557 Query: 385 ccgtacgcgctgcgggggatgggctgggctctcggcatcaccacgctctccctcatcgct 444 ||||||||||||||||||||||| ||||| |||||| | ||||| || | |||| Sbjct: 29001558 ccgtacgcgctgcgggggatggggtgggcgctcggcctggtggcgctcaccgccgtcgcc 29001617 Query: 445 gccgtcaccttctacgagtactccctcatgtcccgcgtactcgaccactgcgaggcgcgc 504 |||||||||||||||| |||| |||||||||| | || ||||||||||||||||| | | Sbjct: 29001618 gccgtcaccttctacgcctactacctcatgtccagggtcctcgaccactgcgaggcccac 29001677 Query: 505 ggccgcaggcacatccgcttccgcgagctcgccgccgacgtcct 548 |||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 29001678 ggccgccgccacatccgcttccgcgagctcgccgccgacgtcct 29001721 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 277 cccgcccccgacgccggcgccgccttcgtgctggagtccaaagg 320 |||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 29001357 cccgccgccgacgccggcgccgccttcgtgctcgagtccaaagg 29001400 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 274 gtccccgcccccgacgccggcgccgccttcgt 305 ||||||| | ||||||||| |||||||||||| Sbjct: 1048996 gtccccggcgccgacgccgacgccgccttcgt 1049027
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 205 gccgcgttcgacgccgaggccggcggc 231 ||||||||||||||| ||||||||||| Sbjct: 118923 gccgcgttcgacgcccaggccggcggc 118897
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 205 gccgcgttcgacgccgaggccggcggc 231 ||||||||||||||| ||||||||||| Sbjct: 118833 gccgcgttcgacgcccaggccggcggc 118859
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 205 gccgcgttcgacgccgaggccggcggc 231 ||||||||||||||| ||||||||||| Sbjct: 88902 gccgcgttcgacgcccaggccggcggc 88928
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 211 ttcgacgccgaggccggcggcccggcgatcg 241 ||||||| ||||||||||||| ||||||||| Sbjct: 2177354 ttcgacgtcgaggccggcggcgcggcgatcg 2177324
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 522 cttccgcgagctcgccgccgacg 544 ||||||||||||||||||||||| Sbjct: 2784326 cttccgcgagctcgccgccgacg 2784304
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 522 cttccgcgagctcgccgccgacg 544 ||||||||||||||||||||||| Sbjct: 2784270 cttccgcgagctcgccgccgacg 2784248
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 522 cttccgcgagctcgccgccgacg 544 ||||||||||||||||||||||| Sbjct: 86121 cttccgcgagctcgccgccgacg 86143
>ref|NM_001035920.1| Arabidopsis thaliana amino acid-polyamine transporter AT1G08233 mRNA, complete cds Length = 357 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 313 tccaaagggacatggtggcacgcggggttccacctgacgacg 354 ||||||||||||||||||||| || |||||| |||||||| Sbjct: 82 tccaaagggacatggtggcactgcggattccacttgacgacg 123
>ref|NM_123545.2| Arabidopsis thaliana amino acid permease AT5G41800 mRNA, complete cds Length = 1473 Score = 44.1 bits (22), Expect = 0.50 Identities = 55/66 (83%) Strand = Plus / Plus Query: 504 cggccgcaggcacatccgcttccgcgagctcgccgccgacgtccttggctccgggtggat 563 ||||||| | |||||||| ||||| || ||||||||||| || ||||| || || | ||| Sbjct: 281 cggccgccgtcacatccgtttccgggaactcgccgccgatgttcttggatctggattgat 340 Query: 564 gtttta 569 |||||| Sbjct: 341 gtttta 346
>gb|AY128864.1| Arabidopsis thaliana amino acid permease-like protein (At5g41800) mRNA, complete cds Length = 1430 Score = 44.1 bits (22), Expect = 0.50 Identities = 55/66 (83%) Strand = Plus / Plus Query: 504 cggccgcaggcacatccgcttccgcgagctcgccgccgacgtccttggctccgggtggat 563 ||||||| | |||||||| ||||| || ||||||||||| || ||||| || || | ||| Sbjct: 270 cggccgccgtcacatccgtttccgggaactcgccgccgatgttcttggatctggattgat 329 Query: 564 gtttta 569 |||||| Sbjct: 330 gtttta 335
>gb|AY099685.1| Arabidopsis thaliana amino acid permease-like protein (At5g41800) mRNA, complete cds Length = 1456 Score = 44.1 bits (22), Expect = 0.50 Identities = 55/66 (83%) Strand = Plus / Plus Query: 504 cggccgcaggcacatccgcttccgcgagctcgccgccgacgtccttggctccgggtggat 563 ||||||| | |||||||| ||||| || ||||||||||| || ||||| || || | ||| Sbjct: 281 cggccgccgtcacatccgtttccgggaactcgccgccgatgttcttggatctggattgat 340 Query: 564 gtttta 569 |||||| Sbjct: 341 gtttta 346
>emb|BX815676.1|CNS0AAUT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS82ZF03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1358 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 313 tccaaagggacatggtggcacgcggggttccacctgacgacg 354 ||||||||||||||||||||| || |||||| |||||||| Sbjct: 91 tccaaagggacatggtggcactgcggattccacttgacgacg 132
>emb|BX833802.1|CNS09Z60 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL78ZB06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1330 Score = 44.1 bits (22), Expect = 0.50 Identities = 55/66 (83%) Strand = Plus / Plus Query: 504 cggccgcaggcacatccgcttccgcgagctcgccgccgacgtccttggctccgggtggat 563 ||||||| | |||||||| ||||| || ||||||||||| || ||||| || || | ||| Sbjct: 265 cggccgccgtcacatccgtttccgggaactcgccgccgatgttcttggatctggattgat 324 Query: 564 gtttta 569 |||||| Sbjct: 325 gtttta 330
>gb|AY086027.1| Arabidopsis thaliana clone 20725 mRNA, complete sequence Length = 1468 Score = 44.1 bits (22), Expect = 0.50 Identities = 55/66 (83%) Strand = Plus / Plus Query: 504 cggccgcaggcacatccgcttccgcgagctcgccgccgacgtccttggctccgggtggat 563 ||||||| | |||||||| ||||| || ||||||||||| || ||||| || || | ||| Sbjct: 282 cggccgccgtcacatccgtttccgggaactcgccgccgatgttcttggatctggattgat 341 Query: 564 gtttta 569 |||||| Sbjct: 342 gtttta 347
>ref|NM_208146.1| Eremothecium gossypii ABL154Wp (ABL154W), mRNA Length = 1572 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 cagccgagctccaggccatggc 200 |||||||||||||||||||||| Sbjct: 1535 cagccgagctccaggccatggc 1556
>emb|AJ628018.2| Streptomyces sp. SCC 2136 deoxysugar biosynthetic gene cluster Length = 77550 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 219 cgaggccggcggcccggcgatcgtggccgc 248 ||||||||||||| ||||| |||||||||| Sbjct: 3538 cgaggccggcggcacggcgctcgtggccgc 3567
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 cagccgagctccaggccatggc 200 |||||||||||||||||||||| Sbjct: 112107 cagccgagctccaggccatggc 112128
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 212 tcgacgccgaggccggcggcccggcgatc 240 ||||||||||||||||| || |||||||| Sbjct: 1222872 tcgacgccgaggccggccgcgcggcgatc 1222900
>gb|AC100821.2| Homo sapiens chromosome 8, clone RP11-30L15, complete sequence Length = 183976 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 ggagtccaaagggacatggtg 329 ||||||||||||||||||||| Sbjct: 147918 ggagtccaaagggacatggtg 147898
>gb|AE012421.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 329 of 460 of the complete genome Length = 12226 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 cccggcgatcgtggccgcggc 251 ||||||||||||||||||||| Sbjct: 11020 cccggcgatcgtggccgcggc 11000
>dbj|AB230044.1| Aspergillus oryzae cDNA, contig sequence: AoEST6931 Length = 396 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 540 cgacgtccttggctccgggtggatg 564 |||||||| |||||||||||||||| Sbjct: 202 cgacgtccatggctccgggtggatg 178
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 540 cgacgtccttggctccgggtggatg 564 |||||||| |||||||||||||||| Sbjct: 1404114 cgacgtccatggctccgggtggatg 1404138
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 cccggcgatcgtggccgcggc 251 ||||||||||||||||||||| Sbjct: 1312363 cccggcgatcgtggccgcggc 1312383
>gb|AE004522.1| Pseudomonas aeruginosa PAO1, section 83 of 529 of the complete genome Length = 15724 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 tcgacgccgaggccggcggcc 232 ||||||||||||||||||||| Sbjct: 9913 tcgacgccgaggccggcggcc 9893
>gb|AF512031.3| Choristoneura fumiferana MNPV polyhedrin, complete genome Length = 129593 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 cgttcgacgccgaggccggcg 229 ||||||||||||||||||||| Sbjct: 64527 cgttcgacgccgaggccggcg 64547
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 tcgacgccgaggccggcggc 231 |||||||||||||||||||| Sbjct: 92374 tcgacgccgaggccggcggc 92393
>ref|NM_183547.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1436 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 ccccgcccccgacgccggcg 295 |||||||||||||||||||| Sbjct: 329 ccccgcccccgacgccggcg 348
>ref|XM_493912.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 879 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 274 gtccccgcccccgacgccggcgccgccttcgt 305 ||||||| | ||||||||| |||||||||||| Sbjct: 572 gtccccggcgccgacgccgacgccgccttcgt 541
>ref|XM_469147.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1137 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 cgccggcgccgccttcgtgc 307 |||||||||||||||||||| Sbjct: 411 cgccggcgccgccttcgtgc 430
>ref|NM_175505.2| Mus musculus RIKEN cDNA A930017K11 gene (A930017K11Rik), mRNA Length = 2965 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ccgtccccgcccccgacgcc 291 |||||||||||||||||||| Sbjct: 628 ccgtccccgcccccgacgcc 647
>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01, complete sequence Length = 122768 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 274 gtccccgcccccgacgccggcgccgccttcgt 305 ||||||| | ||||||||| |||||||||||| Sbjct: 4607 gtccccggcgccgacgccgacgccgccttcgt 4638
>gb|AC145322.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0096N19, complete sequence Length = 178671 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 tccgcgagctcgccgccgac 543 |||||||||||||||||||| Sbjct: 40173 tccgcgagctcgccgccgac 40154
>gb|AY714349.1| Gallus gallus betacellulin precursor (BTC) mRNA, complete cds, alternatively spliced Length = 691 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctccctcatcgctgccgtc 450 |||||||||||||||||||| Sbjct: 374 tctccctcatcgctgccgtc 393
>gb|AY681125.1| Gallus gallus betacellulin precursor (BTC) mRNA, complete cds Length = 1154 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctccctcatcgctgccgtc 450 |||||||||||||||||||| Sbjct: 374 tctccctcatcgctgccgtc 393
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 cgccggcgccgccttcgtgc 307 |||||||||||||||||||| Sbjct: 25742821 cgccggcgccgccttcgtgc 25742840
>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete sequence Length = 190834 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cgccggcgccgccttcgtgc 307 |||||||||||||||||||| Sbjct: 102075 cgccggcgccgccttcgtgc 102056
>gb|AC004808.1| Homo sapiens PAC clone RP4-587D13 from 7, complete sequence Length = 123397 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 caccacgctctccctcatcgctgc 446 |||||||||||||||||| ||||| Sbjct: 60877 caccacgctctccctcattgctgc 60900
>emb|AJ635369.2| Haloferax volcanii mre11 gene for double-strand break repair protein Mre11 and rad50 gene for DNA double-strand break repair Rad50 ATPase Length = 5333 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 tcgacgccgaggccggcggcccgg 235 |||||| ||||||||||||||||| Sbjct: 4907 tcgacgacgaggccggcggcccgg 4930
>gb|AC126071.5| Rattus norvegicus 10 BAC CH230-209B21 (Children's Hospital Oakland Research Institute) complete sequence Length = 227741 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ccgtccccgcccccgacgcc 291 |||||||||||||||||||| Sbjct: 193621 ccgtccccgcccccgacgcc 193602
>emb|AL355296.12| Human DNA sequence from clone RP11-510H23 on chromosome 6 Contains parts of 3 novel genes and a CpG island, complete sequence Length = 159110 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 agctcctactgtattaatta 105 |||||||||||||||||||| Sbjct: 105546 agctcctactgtattaatta 105527
>emb|X87822.1|MAFASGEN B.ammoniagenes FAS gene Length = 10520 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tgccgcgttcgacgccgagg 223 |||||||||||||||||||| Sbjct: 10152 tgccgcgttcgacgccgagg 10133
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 ccgcttccgcgagctcgccgccga 542 |||| ||||||||||||||||||| Sbjct: 280235 ccgcatccgcgagctcgccgccga 280258
>gb|AC159277.3| Mus musculus BAC clone RP23-356J2 from chromosome 17, complete sequence Length = 231245 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ccgtccccgcccccgacgcc 291 |||||||||||||||||||| Sbjct: 81270 ccgtccccgcccccgacgcc 81251
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 ccgcttccgcgagctcgccgccga 542 |||| ||||||||||||||||||| Sbjct: 56062 ccgcatccgcgagctcgccgccga 56085
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 ccggcgatcgtggccgcggc 251 |||||||||||||||||||| Sbjct: 218482 ccggcgatcgtggccgcggc 218501
>emb|AL583920.1|MLEPRTN4 Mycobacterium leprae strain TN complete genome; segment 4/10 Length = 348450 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 379 acgctgccgtacgcgctgcgggggatgg 406 ||||||||||||||||| | |||||||| Sbjct: 47115 acgctgccgtacgcgctactggggatgg 47142
>emb|AL022602.1|MLCB268 Mycobacterium leprae cosmid B268 Length = 38859 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 379 acgctgccgtacgcgctgcgggggatgg 406 ||||||||||||||||| | |||||||| Sbjct: 38110 acgctgccgtacgcgctactggggatgg 38083
>emb|BX322647.12| Zebrafish DNA sequence from clone DKEYP-86F8 in linkage group 1, complete sequence Length = 216540 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tcacagccgtaaccactagc 176 |||||||||||||||||||| Sbjct: 35874 tcacagccgtaaccactagc 35893
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 cgacgccgaggccggcggcc 232 |||||||||||||||||||| Sbjct: 3606818 cgacgccgaggccggcggcc 3606799
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cggcgccgccttcgtgctgg 310 |||||||||||||||||||| Sbjct: 4729185 cggcgccgccttcgtgctgg 4729204
>gb|L78814.1|MSGB1554CS Mycobacterium leprae cosmid B1554 DNA sequence Length = 36548 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 379 acgctgccgtacgcgctgcgggggatgg 406 ||||||||||||||||| | |||||||| Sbjct: 19119 acgctgccgtacgcgctactggggatgg 19146
>gb|L78813.1|MSGB1551CS Mycobacterium leprae cosmid B1551 DNA sequence Length = 36548 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 379 acgctgccgtacgcgctgcgggggatgg 406 ||||||||||||||||| | |||||||| Sbjct: 19119 acgctgccgtacgcgctactggggatgg 19146
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 gcgaggcgcgcggccgcagg 513 |||||||||||||||||||| Sbjct: 2719408 gcgaggcgcgcggccgcagg 2719427
>ref|XM_689071.1| PREDICTED: Danio rerio similar to Chondroadherin precursor (Cartilage leucine-rich protein) (LOC565802), mRNA Length = 2451 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 tcggcatcaccacgctctcc 435 |||||||||||||||||||| Sbjct: 802 tcggcatcaccacgctctcc 783
>emb|AJ748356.1| Haloferax volcanii polB gene for DNA polymerase B Length = 7120 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 tcgacgccgaggccggcggcccgg 235 |||||| ||||||||||||||||| Sbjct: 283 tcgacgacgaggccggcggcccgg 306
>dbj|AK052760.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630044L22 product:hypothetical protein, full insert sequence Length = 2965 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ccgtccccgcccccgacgcc 291 |||||||||||||||||||| Sbjct: 628 ccgtccccgcccccgacgcc 647
>dbj|AK044505.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930017K11 product:unclassifiable, full insert sequence Length = 2537 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ccgtccccgcccccgacgcc 291 |||||||||||||||||||| Sbjct: 469 ccgtccccgcccccgacgcc 450
>gb|AC127185.3| Rattus norvegicus BAC CH230-28E5 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 233648 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ccgtccccgcccccgacgcc 291 |||||||||||||||||||| Sbjct: 166083 ccgtccccgcccccgacgcc 166102
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tccgcgagctcgccgccgac 543 |||||||||||||||||||| Sbjct: 4791501 tccgcgagctcgccgccgac 4791520
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 cgccggcgccgccttcgtgc 307 |||||||||||||||||||| Sbjct: 25834130 cgccggcgccgccttcgtgc 25834149
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tccgcgagctcgccgccgac 543 |||||||||||||||||||| Sbjct: 25346439 tccgcgagctcgccgccgac 25346458
>ref|NM_001004769.1| Gallus gallus betacellulin (BTC), mRNA Length = 1154 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tctccctcatcgctgccgtc 450 |||||||||||||||||||| Sbjct: 374 tctccctcatcgctgccgtc 393
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ggccggcggcccggcgatcg 241 |||||||||||||||||||| Sbjct: 4854573 ggccggcggcccggcgatcg 4854592
>gb|AC018730.8| Homo sapiens BAC clone RP11-13J10 from 2, complete sequence Length = 154728 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 495 cgaggcgcgcggccgcaggcacat 518 |||||||||||||||| ||||||| Sbjct: 68053 cgaggcgcgcggccgctggcacat 68076
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 ttcgacgccgaggccggcgg 230 |||||||||||||||||||| Sbjct: 8143167 ttcgacgccgaggccggcgg 8143186
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 ccgacgccggcgccgccttcgtgc 307 |||||| ||||||||||||||||| Sbjct: 4321651 ccgacgacggcgccgccttcgtgc 4321628
>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032H19 Length = 126434 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 ccccgcccccgacgccggcg 295 |||||||||||||||||||| Sbjct: 34286 ccccgcccccgacgccggcg 34267
>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439B06 Length = 135991 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 ccccgcccccgacgccggcg 295 |||||||||||||||||||| Sbjct: 125147 ccccgcccccgacgccggcg 125128
>dbj|AP006452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1250G12 Length = 144590 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tccgcgagctcgccgccgac 543 |||||||||||||||||||| Sbjct: 113590 tccgcgagctcgccgccgac 113609
>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1643_A10 Length = 130037 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tccgcgagctcgccgccgac 543 |||||||||||||||||||| Sbjct: 2101 tccgcgagctcgccgccgac 2120
>gb|AE005068.1| Halobacterium sp. NRC-1 section 99 of 170 of the complete genome Length = 13635 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 tcgaccactgcgaggcgcgc 504 |||||||||||||||||||| Sbjct: 404 tcgaccactgcgaggcgcgc 385
>dbj|AB016871.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16L22 Length = 79109 Score = 40.1 bits (20), Expect = 7.8 Identities = 41/48 (85%) Strand = Plus / Plus Query: 504 cggccgcaggcacatccgcttccgcgagctcgccgccgacgtccttgg 551 ||||||| | |||||||| ||||| || ||||||||||| || ||||| Sbjct: 35524 cggccgccgtcacatccgtttccgggaactcgccgccgatgttcttgg 35571
>dbj|AK121904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105I05, full insert sequence Length = 1204 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 274 gtccccgcccccgacgccggcgccgccttcgt 305 ||||||| | ||||||||| |||||||||||| Sbjct: 632 gtccccggcgccgacgccgacgccgccttcgt 601
>dbj|AK120201.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037I12, full insert sequence Length = 1435 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 ccccgcccccgacgccggcg 295 |||||||||||||||||||| Sbjct: 329 ccccgcccccgacgccggcg 348
>emb|AJ334832.1|HSA334832 Homo sapiens genomic sequence surrounding NotI site, clone NB1-047R Length = 673 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 gagctcgccgccgacgtcct 548 |||||||||||||||||||| Sbjct: 258 gagctcgccgccgacgtcct 277
>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04 Length = 175439 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 274 gtccccgcccccgacgccggcgccgccttcgt 305 ||||||| | ||||||||| |||||||||||| Sbjct: 139393 gtccccggcgccgacgccgacgccgccttcgt 139424
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tccgcgagctcgccgccgac 543 |||||||||||||||||||| Sbjct: 4810285 tccgcgagctcgccgccgac 4810304
>emb|AL954851.5| Zebrafish DNA sequence from clone CH211-280J3, complete sequence Length = 177221 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 tcggcatcaccacgctctcc 435 |||||||||||||||||||| Sbjct: 118071 tcggcatcaccacgctctcc 118090
>dbj|AB008896.1| Chlorella vulgaris retrotransposon Zepp genes for Gag-like protein and reverse transcriptase, complete cds Length = 9179 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctgccgtacgcgctgcgggg 401 |||||||||||||||||||| Sbjct: 5630 ctgccgtacgcgctgcgggg 5611 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,277,367 Number of Sequences: 3902068 Number of extensions: 3277367 Number of successful extensions: 74783 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71911 Number of HSP's gapped (non-prelim): 2872 length of query: 577 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 554 effective length of database: 17,143,297,704 effective search space: 9497386928016 effective search space used: 9497386928016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
