Clone Name | bart24e02 |
---|---|
Clone Library Name | barley_pub |
>GATA2_ARATH (O49741) GATA transcription factor 2 (AtGATA-2)| Length = 264 Score = 52.8 bits (125), Expect = 7e-07 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 13/101 (12%) Frame = +3 Query: 273 MRVDELMDHF-------------PSAGAHDFFPAAPDNGLHHHQHLGAAVGELSATTPSA 413 +R+D+L+D +A + FP P N HH HL Sbjct: 12 LRIDDLLDFSNEDIFSASSSGGSTAATSSSSFPP-PQNPSFHHHHL-------------P 57 Query: 414 TSSDHQTSMLSFADEFYIPSEEAAELEWLSKFVDDSYSDMP 536 +S+DH SF + +PS++AA LEWLS+FVDDS++D P Sbjct: 58 SSADHH----SFLHDICVPSDDAAHLEWLSQFVDDSFADFP 94
>GATA4_ARATH (O49743) GATA transcription factor 4 (AtGATA-4)| Length = 240 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/54 (46%), Positives = 35/54 (64%) Frame = +3 Query: 375 AAVGELSATTPSATSSDHQTSMLSFADEFYIPSEEAAELEWLSKFVDDSYSDMP 536 AA E + PS+T + T + F + +PS++AA LEWLS+FVDDS+SD P Sbjct: 40 AASSENPFSFPSSTYTS-PTLLTDFTHDLCVPSDDAAHLEWLSRFVDDSFSDFP 92
>GAT11_ARATH (O82632) GATA transcription factor 11 (AtGATA-11)| Length = 308 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%) Frame = +3 Query: 393 SATTPSATSSDHQTSMLSFAD-----EFYIPSEEAAELEWLSKFVDDSYS 527 S+T + T +D S F D + YIP+++ AELEWLS FV++S++ Sbjct: 43 SSTLSTGTLTDSSNSSSLFTDGTGFSDLYIPNDDIAELEWLSNFVEESFA 92
>GATA9_ARATH (Q9SD38) GATA transcription factor 9 (AtGATA-9)| Length = 312 Score = 35.4 bits (80), Expect = 0.11 Identities = 18/36 (50%), Positives = 24/36 (66%) Frame = +3 Query: 414 TSSDHQTSMLSFADEFYIPSEEAAELEWLSKFVDDS 521 +++D TS LS +P ++ AELEWLS FVDDS Sbjct: 74 STADFHTSGLS------VPMDDIAELEWLSNFVDDS 103
>GAT14_ARATH (Q9FH57) GATA transcription factor 14| Length = 339 Score = 33.5 bits (75), Expect = 0.43 Identities = 12/25 (48%), Positives = 20/25 (80%) Frame = +3 Query: 456 EFYIPSEEAAELEWLSKFVDDSYSD 530 E +P+++ A LEWLS FV+DS+++ Sbjct: 102 ELSLPADDLANLEWLSHFVEDSFTE 126
>GAT13_ARATH (P69781) Putative GATA transcription factor 13| Length = 331 Score = 32.3 bits (72), Expect = 0.95 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = +3 Query: 444 SFADEFYIPSEEAA-ELEWLSKFVDDSYS 527 SF+ + IPS++ A ELEWLS VD+S S Sbjct: 66 SFSGDLCIPSDDLADELEWLSNIVDESLS 94
>TTLL4_HUMAN (Q14679) Tubulin--tyrosine ligase-like protein 4| Length = 1199 Score = 31.6 bits (70), Expect = 1.6 Identities = 23/72 (31%), Positives = 33/72 (45%) Frame = +3 Query: 306 SAGAHDFFPAAPDNGLHHHQHLGAAVGELSATTPSATSSDHQTSMLSFADEFYIPSEEAA 485 S G D P D+ + + +G + SA +T+S H TS S A +Y + A Sbjct: 255 SGGTGDCAPQPVDHKVP--KSIGTVPADASAHIALSTASSHDTSTTSVASSWYNRNNLAM 312 Query: 486 ELEWLSKFVDDS 521 E LS +DDS Sbjct: 313 RAEPLSCALDDS 324
>DAB_DROME (P98081) Protein disabled| Length = 2224 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -3 Query: 193 MGAALTLAALWYDPIPMPSSTPMAISHS 110 +G L+ AL DP+P P S P +ISHS Sbjct: 560 LGQLLSTVALNPDPLPAPISIPTSISHS 587
>GAT12_ARATH (O65515) GATA transcription factor 12| Length = 238 Score = 30.0 bits (66), Expect = 4.7 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = +3 Query: 438 MLSFADEFYIPSEEAAELEWLSKFVDDSYSD 530 +LSF + P + +LEWLS FV+DS+S+ Sbjct: 59 LLSFPGD--APVGDLEDLEWLSNFVEDSFSE 87
>NEO1_HUMAN (Q92859) Neogenin precursor| Length = 1461 Score = 29.6 bits (65), Expect = 6.1 Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 18/86 (20%) Frame = +3 Query: 303 PSAGAHDFFPAAPDN------GLHHHQH---------LGAAVGELSATTPSATSSDHQTS 437 P G + PA P L+HH H LG + + PSA T Sbjct: 1368 PPPGPPTYDPALPSTPLLSQQALNHHIHSVKTASIGTLGRSRPPMPVVVPSAPEVQETTR 1427 Query: 438 MLSFADEFYIPSE---EAAELEWLSK 506 ML ++ Y P E E A LE L K Sbjct: 1428 MLEDSESSYEPDELTKEMAHLEGLMK 1453
>NEO1_RAT (P97603) Neogenin precursor (Fragment)| Length = 1377 Score = 29.3 bits (64), Expect = 8.0 Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 18/86 (20%) Frame = +3 Query: 303 PSAGAHDFFPAAPDN------GLHHHQH---------LGAAVGELSATTPSATSSDHQTS 437 P G + PA P L+HH H LG + + PSA T Sbjct: 1284 PPPGPPIYDPALPSTPLLSQQALNHHLHSVKTASIGTLGRSRPPMPVVVPSAPEVQEATR 1343 Query: 438 MLSFADEFYIPSE---EAAELEWLSK 506 ML ++ Y P E E A LE L K Sbjct: 1344 MLEDSESSYEPDELTKEMAHLEGLMK 1369
>HUNB_DROSO (O46258) Protein hunchback (Fragments)| Length = 159 Score = 29.3 bits (64), Expect = 8.0 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +3 Query: 354 HHHQHLGAAVGELSATTPSATSSDHQTSMLSFADEFYIPSEEAAELEW 497 HHH H G + + S SS HQ+ + + E Y+ ++ L W Sbjct: 21 HHHHHHGHHQHQQRHNSNSNASSPHQSPLPNLQLEQYLKQQQQQPLMW 68 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,367,123 Number of Sequences: 219361 Number of extensions: 995210 Number of successful extensions: 4523 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4338 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4520 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)