ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart24e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GATA2_ARATH (O49741) GATA transcription factor 2 (AtGATA-2) 53 7e-07
2GATA4_ARATH (O49743) GATA transcription factor 4 (AtGATA-4) 50 4e-06
3GAT11_ARATH (O82632) GATA transcription factor 11 (AtGATA-11) 42 0.002
4GATA9_ARATH (Q9SD38) GATA transcription factor 9 (AtGATA-9) 35 0.11
5GAT14_ARATH (Q9FH57) GATA transcription factor 14 33 0.43
6GAT13_ARATH (P69781) Putative GATA transcription factor 13 32 0.95
7TTLL4_HUMAN (Q14679) Tubulin--tyrosine ligase-like protein 4 32 1.6
8DAB_DROME (P98081) Protein disabled 30 3.6
9GAT12_ARATH (O65515) GATA transcription factor 12 30 4.7
10NEO1_HUMAN (Q92859) Neogenin precursor 30 6.1
11NEO1_RAT (P97603) Neogenin precursor (Fragment) 29 8.0
12HUNB_DROSO (O46258) Protein hunchback (Fragments) 29 8.0

>GATA2_ARATH (O49741) GATA transcription factor 2 (AtGATA-2)|
          Length = 264

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
 Frame = +3

Query: 273 MRVDELMDHF-------------PSAGAHDFFPAAPDNGLHHHQHLGAAVGELSATTPSA 413
           +R+D+L+D                +A +   FP  P N   HH HL              
Sbjct: 12  LRIDDLLDFSNEDIFSASSSGGSTAATSSSSFPP-PQNPSFHHHHL-------------P 57

Query: 414 TSSDHQTSMLSFADEFYIPSEEAAELEWLSKFVDDSYSDMP 536
           +S+DH     SF  +  +PS++AA LEWLS+FVDDS++D P
Sbjct: 58  SSADHH----SFLHDICVPSDDAAHLEWLSQFVDDSFADFP 94



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>GATA4_ARATH (O49743) GATA transcription factor 4 (AtGATA-4)|
          Length = 240

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 25/54 (46%), Positives = 35/54 (64%)
 Frame = +3

Query: 375 AAVGELSATTPSATSSDHQTSMLSFADEFYIPSEEAAELEWLSKFVDDSYSDMP 536
           AA  E   + PS+T +   T +  F  +  +PS++AA LEWLS+FVDDS+SD P
Sbjct: 40  AASSENPFSFPSSTYTS-PTLLTDFTHDLCVPSDDAAHLEWLSRFVDDSFSDFP 92



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>GAT11_ARATH (O82632) GATA transcription factor 11 (AtGATA-11)|
          Length = 308

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
 Frame = +3

Query: 393 SATTPSATSSDHQTSMLSFAD-----EFYIPSEEAAELEWLSKFVDDSYS 527
           S+T  + T +D   S   F D     + YIP+++ AELEWLS FV++S++
Sbjct: 43  SSTLSTGTLTDSSNSSSLFTDGTGFSDLYIPNDDIAELEWLSNFVEESFA 92



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>GATA9_ARATH (Q9SD38) GATA transcription factor 9 (AtGATA-9)|
          Length = 312

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +3

Query: 414 TSSDHQTSMLSFADEFYIPSEEAAELEWLSKFVDDS 521
           +++D  TS LS      +P ++ AELEWLS FVDDS
Sbjct: 74  STADFHTSGLS------VPMDDIAELEWLSNFVDDS 103



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>GAT14_ARATH (Q9FH57) GATA transcription factor 14|
          Length = 339

 Score = 33.5 bits (75), Expect = 0.43
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = +3

Query: 456 EFYIPSEEAAELEWLSKFVDDSYSD 530
           E  +P+++ A LEWLS FV+DS+++
Sbjct: 102 ELSLPADDLANLEWLSHFVEDSFTE 126



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>GAT13_ARATH (P69781) Putative GATA transcription factor 13|
          Length = 331

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +3

Query: 444 SFADEFYIPSEEAA-ELEWLSKFVDDSYS 527
           SF+ +  IPS++ A ELEWLS  VD+S S
Sbjct: 66  SFSGDLCIPSDDLADELEWLSNIVDESLS 94



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>TTLL4_HUMAN (Q14679) Tubulin--tyrosine ligase-like protein 4|
          Length = 1199

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 23/72 (31%), Positives = 33/72 (45%)
 Frame = +3

Query: 306 SAGAHDFFPAAPDNGLHHHQHLGAAVGELSATTPSATSSDHQTSMLSFADEFYIPSEEAA 485
           S G  D  P   D+ +   + +G    + SA    +T+S H TS  S A  +Y  +  A 
Sbjct: 255 SGGTGDCAPQPVDHKVP--KSIGTVPADASAHIALSTASSHDTSTTSVASSWYNRNNLAM 312

Query: 486 ELEWLSKFVDDS 521
             E LS  +DDS
Sbjct: 313 RAEPLSCALDDS 324



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>DAB_DROME (P98081) Protein disabled|
          Length = 2224

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 193 MGAALTLAALWYDPIPMPSSTPMAISHS 110
           +G  L+  AL  DP+P P S P +ISHS
Sbjct: 560 LGQLLSTVALNPDPLPAPISIPTSISHS 587



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>GAT12_ARATH (O65515) GATA transcription factor 12|
          Length = 238

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 438 MLSFADEFYIPSEEAAELEWLSKFVDDSYSD 530
           +LSF  +   P  +  +LEWLS FV+DS+S+
Sbjct: 59  LLSFPGD--APVGDLEDLEWLSNFVEDSFSE 87



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>NEO1_HUMAN (Q92859) Neogenin precursor|
          Length = 1461

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 18/86 (20%)
 Frame = +3

Query: 303  PSAGAHDFFPAAPDN------GLHHHQH---------LGAAVGELSATTPSATSSDHQTS 437
            P  G   + PA P         L+HH H         LG +   +    PSA      T 
Sbjct: 1368 PPPGPPTYDPALPSTPLLSQQALNHHIHSVKTASIGTLGRSRPPMPVVVPSAPEVQETTR 1427

Query: 438  MLSFADEFYIPSE---EAAELEWLSK 506
            ML  ++  Y P E   E A LE L K
Sbjct: 1428 MLEDSESSYEPDELTKEMAHLEGLMK 1453



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>NEO1_RAT (P97603) Neogenin precursor (Fragment)|
          Length = 1377

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 18/86 (20%)
 Frame = +3

Query: 303  PSAGAHDFFPAAPDN------GLHHHQH---------LGAAVGELSATTPSATSSDHQTS 437
            P  G   + PA P         L+HH H         LG +   +    PSA      T 
Sbjct: 1284 PPPGPPIYDPALPSTPLLSQQALNHHLHSVKTASIGTLGRSRPPMPVVVPSAPEVQEATR 1343

Query: 438  MLSFADEFYIPSE---EAAELEWLSK 506
            ML  ++  Y P E   E A LE L K
Sbjct: 1344 MLEDSESSYEPDELTKEMAHLEGLMK 1369



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>HUNB_DROSO (O46258) Protein hunchback (Fragments)|
          Length = 159

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 354 HHHQHLGAAVGELSATTPSATSSDHQTSMLSFADEFYIPSEEAAELEW 497
           HHH H G    +    + S  SS HQ+ + +   E Y+  ++   L W
Sbjct: 21  HHHHHHGHHQHQQRHNSNSNASSPHQSPLPNLQLEQYLKQQQQQPLMW 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,367,123
Number of Sequences: 219361
Number of extensions: 995210
Number of successful extensions: 4523
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4520
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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