ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart24e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
2gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
3emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 56 1e-04
4gb|CP000316.1| Polaromonas sp. JS666, complete genome 50 0.008
5gb|AC152451.5| Mus musculus BAC clone RP24-309M5 from chromosome... 48 0.032
6ref|XM_978823.1| PREDICTED: Mus musculus hypothetical protein LO... 48 0.032
7ref|XM_984057.1| PREDICTED: Mus musculus hypothetical protein LO... 48 0.032
8ref|XM_994229.1| PREDICTED: Mus musculus hypothetical protein LO... 48 0.032
9dbj|AK052429.1| Mus musculus 13 days embryo lung cDNA, RIKEN ful... 48 0.032
10dbj|AK081193.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 48 0.032
11dbj|AK045860.1| Mus musculus adult male corpora quadrigemina cDN... 48 0.032
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
13dbj|AK065998.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
14gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.13
15emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb... 46 0.13
16gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 44 0.49
17gb|AY127564.1| Callipepla californica clone Cc269 microsatellite... 42 2.0
18ref|XM_472931.1| Oryza sativa (japonica cultivar-group), predic... 40 7.7
19gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 7.7
20gb|AY268337.1| Uncultured bacterium clone D11 16S small subunit ... 40 7.7
21gb|AY268318.1| Uncultured bacterium clone C10 16S small subunit ... 40 7.7
22gb|AY268302.1| Uncultured bacterium clone F2 16S small subunit r... 40 7.7
23gb|AY658488.1| Synthetic construct Peudomonas aeruginosa clone F... 40 7.7
24gb|AY274144.1| Uncultured bacterium clone D138 16S ribosomal RNA... 40 7.7
25ref|XM_754421.1| Ustilago maydis 521 hypothetical protein (UM033... 40 7.7
26emb|X69971.1|NTNTF3A N.tabacum NTF3 mRNA 40 7.7
27emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4,... 40 7.7
28emb|AJ606032.1| Triticum aestivum partial mRNA for putative GDSL... 40 7.7
29gb|AY643478.1| Edwardsiella tarda strain PPD130/91 putative type... 40 7.7
30ref|NM_135604.2| Drosophila melanogaster CG12299-RA (CG12299), mRNA 40 7.7
31ref|XM_681256.1| PREDICTED: Danio rerio similar to ubiquitin spe... 40 7.7
32ref|NM_005128.2| Homo sapiens dopey family member 2 (DOPEY2), mRNA 40 7.7
33gb|AY051994.1| Drosophila melanogaster LD46233 full length cDNA 40 7.7
34dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
35dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
36dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
37gb|AC007147.8|AC007147 Drosophila melanogaster, chromosome 2L, r... 40 7.7
38dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.7
39gb|AE004548.1| Pseudomonas aeruginosa PAO1, section 109 of 529 o... 40 7.7
40dbj|AP004733.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
41dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
42dbj|AP005247.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
43dbj|AK099673.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
44emb|AJ237839.2|HSA237839 Homo sapiens mRNA for hypothetical protein 40 7.7
45emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 7.7
46gb|AC151055.3| Mus musculus BAC clone RP23-24A9 from 6, complete... 40 7.7
47gb|AE003629.2| Drosophila melanogaster chromosome 2L, section 38... 40 7.7
48dbj|AP001725.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.7
49gb|DQ248286.1| Uncultured soil bacterium clone TE12 16S ribosoma... 40 7.7
50gb|M26954.1|PSEOPRH1 Pseudomonas aeruginosa outer membrane prote... 40 7.7
51dbj|AP000691.1| Homo sapiens genomic DNA, chromosome 21q22.2, co... 40 7.7 
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 139/176 (78%)
 Strand = Plus / Plus

                                                                          
Query: 169    aaggtggcagcttccccaagtcaccctctcaccaaaattcaaacttccgtgtactctggt 228
              ||||||| || ||||||||| ||   |||||||||||||||| | ||  ||| |||||||
Sbjct: 197434 aaggtggtagtttccccaaggcattttctcaccaaaattcaagcatctttgtgctctggt 197493

                                                                          
Query: 229    tgcgtcagtaagcggaagcttgacatttctgacgaccgtgaaaagctgctagaatcaccg 288
              | | |||| ||| | |||||    |||||||| || |  |||||||| | ||| || || 
Sbjct: 197494 tccatcagcaagagaaagctcagtatttctgatgatcaggaaaagctacaagagtcgcca 197553

                                                                      
Query: 289    agcaatcccaagcgaccgcacagaacctcaagtgtgccgttcgacctgaacctccc 344
              |||| | | ||||||| ||||||||| || ||||| || |||||||||||||||||
Sbjct: 197554 agcagttcaaagcgactgcacagaacatcgagtgtaccattcgacctgaacctccc 197609
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 139/176 (78%)
 Strand = Plus / Plus

                                                                          
Query: 169    aaggtggcagcttccccaagtcaccctctcaccaaaattcaaacttccgtgtactctggt 228
              ||||||| || ||||||||| ||   |||||||||||||||| | ||  ||| |||||||
Sbjct: 197434 aaggtggtagtttccccaaggcattttctcaccaaaattcaagcatctttgtgctctggt 197493

                                                                          
Query: 229    tgcgtcagtaagcggaagcttgacatttctgacgaccgtgaaaagctgctagaatcaccg 288
              | | |||| ||| | |||||    |||||||| || |  |||||||| | ||| || || 
Sbjct: 197494 tccatcagcaagagaaagctcagtatttctgatgatcaggaaaagctacaagagtcgcca 197553

                                                                      
Query: 289    agcaatcccaagcgaccgcacagaacctcaagtgtgccgttcgacctgaacctccc 344
              |||| | | ||||||| ||||||||| || ||||| || |||||||||||||||||
Sbjct: 197554 agcagttcaaagcgactgcacagaacatcgagtgtaccattcgacctgaacctccc 197609
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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 139/176 (78%)
 Strand = Plus / Minus

                                                                          
Query: 169    aaggtggcagcttccccaagtcaccctctcaccaaaattcaaacttccgtgtactctggt 228
              ||||||| || ||||||||| ||   |||||||||||||||| | ||  ||| |||||||
Sbjct: 107559 aaggtggtagtttccccaaggcattttctcaccaaaattcaagcatctttgtgctctggt 107500

                                                                          
Query: 229    tgcgtcagtaagcggaagcttgacatttctgacgaccgtgaaaagctgctagaatcaccg 288
              | | |||| ||| | |||||    |||||||| || |  |||||||| | ||| || || 
Sbjct: 107499 tccatcagcaagagaaagctcagtatttctgatgatcaggaaaagctacaagagtcgcca 107440

                                                                      
Query: 289    agcaatcccaagcgaccgcacagaacctcaagtgtgccgttcgacctgaacctccc 344
              |||| | | ||||||| ||||||||| || ||||| || |||||||||||||||||
Sbjct: 107439 agcagttcaaagcgactgcacagaacatcgagtgtaccattcgacctgaacctccc 107384
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                        
Query: 480     cgccaacgacatcctgcaggagctg 504
               |||||||||||||||||||||||||
Sbjct: 5022478 cgccaacgacatcctgcaggagctg 5022502
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>gb|AC152451.5| Mus musculus BAC clone RP24-309M5 from chromosome 12, complete sequence
          Length = 145113

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 373    gacggcgacgacagcagcagcaac 396
              ||||||||||||||||||||||||
Sbjct: 119296 gacggcgacgacagcagcagcaac 119319
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>ref|XM_978823.1| PREDICTED: Mus musculus hypothetical protein LOC670060 (LOC670060),
           mRNA
          Length = 2796

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 373 gacggcgacgacagcagcagcaac 396
           ||||||||||||||||||||||||
Sbjct: 536 gacggcgacgacagcagcagcaac 513
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>ref|XM_984057.1| PREDICTED: Mus musculus hypothetical protein LOC675661 (LOC675661),
           mRNA
          Length = 2796

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 373 gacggcgacgacagcagcagcaac 396
           ||||||||||||||||||||||||
Sbjct: 536 gacggcgacgacagcagcagcaac 513
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>ref|XM_994229.1| PREDICTED: Mus musculus hypothetical protein LOC668084 (LOC668084),
           mRNA
          Length = 2796

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 373 gacggcgacgacagcagcagcaac 396
           ||||||||||||||||||||||||
Sbjct: 536 gacggcgacgacagcagcagcaac 513
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>dbj|AK052429.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
           library, clone:D430019H16 product:unclassifiable, full
           insert sequence
          Length = 4596

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 373 gacggcgacgacagcagcagcaac 396
           ||||||||||||||||||||||||
Sbjct: 174 gacggcgacgacagcagcagcaac 197
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>dbj|AK081193.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:B930099B04
           product:unclassifiable, full insert sequence
          Length = 1014

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 373 gacggcgacgacagcagcagcaac 396
           ||||||||||||||||||||||||
Sbjct: 54  gacggcgacgacagcagcagcaac 77
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>dbj|AK045860.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230315E21
           product:unclassifiable, full insert sequence
          Length = 2553

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 373 gacggcgacgacagcagcagcaac 396
           ||||||||||||||||||||||||
Sbjct: 293 gacggcgacgacagcagcagcaac 270
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                             
Query: 298    aagcgaccgcacagaacctcaagtgtgccgttcgacctgaacctccc 344
              ||||||| ||| ||||| || ||| | ||||||||||||||||||||
Sbjct: 224038 aagcgactgcatagaacatcgagtataccgttcgacctgaacctccc 224084
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>dbj|AK065998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049L21, full
            insert sequence
          Length = 3856

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 298  aagcgaccgcacagaacctcaagtgtgccgttcgacctgaacctccc 344
            ||||||| ||| ||||| || ||| | ||||||||||||||||||||
Sbjct: 3101 aagcgactgcatagaacatcgagtataccgttcgacctgaacctccc 3147
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                             
Query: 298    aagcgaccgcacagaacctcaagtgtgccgttcgacctgaacctccc 344
              ||||||| ||| ||||| || ||| | ||||||||||||||||||||
Sbjct: 224038 aagcgactgcatagaacatcgagtataccgttcgacctgaacctccc 224084
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>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 96667

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 298   aagcgaccgcacagaacctcaagtgtgccgttcgacctgaacctccc 344
             ||||||| ||| ||||| || ||| | ||||||||||||||||||||
Sbjct: 51218 aagcgactgcatagaacatcgagtataccgttcgacctgaacctccc 51172
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 507     caacgtgctcggcaacatcatgggcc 532
               ||||||||||| ||||||||||||||
Sbjct: 1247904 caacgtgctcgtcaacatcatgggcc 1247929
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>gb|AY127564.1| Callipepla californica clone Cc269 microsatellite seqence
          Length = 593

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 139 atcaccagcagaggctctcct 159
           |||||||||||||||||||||
Sbjct: 121 atcaccagcagaggctctcct 141
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>ref|XM_472931.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 669

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 cctccccgtcggcgaggacg 358
           ||||||||||||||||||||
Sbjct: 469 cctccccgtcggcgaggacg 450
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 336     gaacctccccgtcggcgaggacgg 359
               |||||| |||||||||||||||||
Sbjct: 1139142 gaacctgcccgtcggcgaggacgg 1139119
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>gb|AY268337.1| Uncultured bacterium clone D11 16S small subunit ribosomal RNA
           gene, partial sequence
          Length = 819

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  atatcttctccgaagagaag 84
           ||||||||||||||||||||
Sbjct: 719 atatcttctccgaagagaag 738
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>gb|AY268318.1| Uncultured bacterium clone C10 16S small subunit ribosomal RNA
           gene, partial sequence
          Length = 762

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  atatcttctccgaagagaag 84
           ||||||||||||||||||||
Sbjct: 696 atatcttctccgaagagaag 715
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>gb|AY268302.1| Uncultured bacterium clone F2 16S small subunit ribosomal RNA
          gene, partial sequence
          Length = 788

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 65 atatcttctccgaagagaag 84
          ||||||||||||||||||||
Sbjct: 92 atatcttctccgaagagaag 73
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>gb|AY658488.1| Synthetic construct Peudomonas aeruginosa clone FLH052191.01F
           PA1178 gene, partial cds
          Length = 603

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 490 atcctgcaggagctgagcaa 509
           ||||||||||||||||||||
Sbjct: 442 atcctgcaggagctgagcaa 461
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>gb|AY274144.1| Uncultured bacterium clone D138 16S ribosomal RNA gene, partial
          sequence
          Length = 988

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 65 atatcttctccgaagagaag 84
          ||||||||||||||||||||
Sbjct: 87 atatcttctccgaagagaag 68
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>ref|XM_754421.1| Ustilago maydis 521 hypothetical protein (UM03367.1) partial mRNA
          Length = 5193

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 375  cggcgacgacagcagcagca 394
            ||||||||||||||||||||
Sbjct: 4280 cggcgacgacagcagcagca 4299
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>emb|X69971.1|NTNTF3A N.tabacum NTF3 mRNA
          Length = 1672

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 195 tctcaccaaaattcaaactt 214
           ||||||||||||||||||||
Sbjct: 240 tctcaccaaaattcaaactt 221
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>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15,
             complete sequence
          Length = 150864

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   cctccccgtcggcgaggacg 358
             ||||||||||||||||||||
Sbjct: 52989 cctccccgtcggcgaggacg 52970
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>emb|AJ606032.1| Triticum aestivum partial mRNA for putative GDSL-motif lipase
           (at2G04570 gene)
          Length = 432

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 375 cggcgacgacagcagcagca 394
           ||||||||||||||||||||
Sbjct: 75  cggcgacgacagcagcagca 56
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>gb|AY643478.1| Edwardsiella tarda strain PPD130/91 putative type III secretion system
             gene cluster, complete sequence
          Length = 41204

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   acggcgacgacagcagcagc 393
             ||||||||||||||||||||
Sbjct: 18409 acggcgacgacagcagcagc 18390
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>ref|NM_135604.2| Drosophila melanogaster CG12299-RA (CG12299), mRNA
          Length = 3304

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 366 tgacgctgacggcgacgacagcagcagc 393
           ||||| ||||| ||||||||||||||||
Sbjct: 817 tgacgatgacgacgacgacagcagcagc 844
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>ref|XM_681256.1| PREDICTED: Danio rerio similar to ubiquitin specific protease 53
           (LOC558085), mRNA
          Length = 2019

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 377 gcgacgacagcagcagcaac 396
           ||||||||||||||||||||
Sbjct: 807 gcgacgacagcagcagcaac 826
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>ref|NM_005128.2| Homo sapiens dopey family member 2 (DOPEY2), mRNA
          Length = 7689

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 492  cctgcaggagctgagcaacg 511
            ||||||||||||||||||||
Sbjct: 3481 cctgcaggagctgagcaacg 3500
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>gb|AY051994.1| Drosophila melanogaster LD46233 full length cDNA
          Length = 3333

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 366 tgacgctgacggcgacgacagcagcagc 393
           ||||| ||||| ||||||||||||||||
Sbjct: 817 tgacgatgacgacgacgacagcagcagc 844
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 339      cctccccgtcggcgaggacg 358
                ||||||||||||||||||||
Sbjct: 24163764 cctccccgtcggcgaggacg 24163745
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 375      cggcgacgacagcagcagca 394
                ||||||||||||||||||||
Sbjct: 13026369 cggcgacgacagcagcagca 13026350
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 339      cctccccgtcggcgaggacg 358
                ||||||||||||||||||||
Sbjct: 24962074 cctccccgtcggcgaggacg 24962093
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>gb|AC007147.8|AC007147 Drosophila melanogaster, chromosome 2L, region 32A-, BAC clone BACR19N18,
              complete sequence
          Length = 196248

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 366    tgacgctgacggcgacgacagcagcagc 393
              ||||| ||||| ||||||||||||||||
Sbjct: 179413 tgacgatgacgacgacgacagcagcagc 179386
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 486     cgacatcctgcaggagctgagcaa 509
               |||||||||||| |||||||||||
Sbjct: 5929578 cgacatcctgcacgagctgagcaa 5929555
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>gb|AE004548.1| Pseudomonas aeruginosa PAO1, section 109 of 529 of the complete
           genome
          Length = 10054

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 490 atcctgcaggagctgagcaa 509
           ||||||||||||||||||||
Sbjct: 583 atcctgcaggagctgagcaa 602
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>dbj|AP004733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0023I22
          Length = 170029

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   cctccccgtcggcgaggacg 358
             ||||||||||||||||||||
Sbjct: 14407 cctccccgtcggcgaggacg 14426
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>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0530H05
          Length = 145952

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   cctccccgtcggcgaggacg 358
             ||||||||||||||||||||
Sbjct: 56629 cctccccgtcggcgaggacg 56648
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>dbj|AP005247.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0077F02
          Length = 172442

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    cggcgacgacagcagcagca 394
              ||||||||||||||||||||
Sbjct: 100666 cggcgacgacagcagcagca 100647
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>dbj|AK099673.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069E13, full
           insert sequence
          Length = 2862

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 375 cggcgacgacagcagcagca 394
           ||||||||||||||||||||
Sbjct: 118 cggcgacgacagcagcagca 99
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>emb|AJ237839.2|HSA237839 Homo sapiens mRNA for hypothetical protein
          Length = 7288

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 492  cctgcaggagctgagcaacg 511
            ||||||||||||||||||||
Sbjct: 3487 cctgcaggagctgagcaacg 3506
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 448     atcgaattcaaggcgttcga 467
               ||||||||||||||||||||
Sbjct: 2991144 atcgaattcaaggcgttcga 2991125
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>gb|AC151055.3| Mus musculus BAC clone RP23-24A9 from 6, complete sequence
          Length = 230998

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    tcctggctgctagaggacaa 105
             ||||||||||||||||||||
Sbjct: 72732 tcctggctgctagaggacaa 72751
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>gb|AE003629.2| Drosophila melanogaster chromosome 2L, section 38 of 83 of the complete
              sequence
          Length = 261176

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 366    tgacgctgacggcgacgacagcagcagc 393
              ||||| ||||| ||||||||||||||||
Sbjct: 231344 tgacgatgacgacgacgacagcagcagc 231371
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>dbj|AP001725.1| Homo sapiens genomic DNA, chromosome 21q, section 69/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 492    cctgcaggagctgagcaacg 511
              ||||||||||||||||||||
Sbjct: 142132 cctgcaggagctgagcaacg 142151
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>gb|DQ248286.1| Uncultured soil bacterium clone TE12 16S ribosomal RNA gene,
          partial sequence
          Length = 1487

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 65 atatcttctccgaagagaag 84
          ||||||||||||||||||||
Sbjct: 87 atatcttctccgaagagaag 68
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>gb|M26954.1|PSEOPRH1 Pseudomonas aeruginosa outer membrane protein H1 (oprH) gene,
           complete cds
          Length = 744

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 490 atcctgcaggagctgagcaa 509
           ||||||||||||||||||||
Sbjct: 532 atcctgcaggagctgagcaa 551
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>dbj|AP000691.1| Homo sapiens genomic DNA, chromosome 21q22.2, cosmid clone:Q78B1,
            CBR1-HLCS region
          Length = 40582

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 492  cctgcaggagctgagcaacg 511
            ||||||||||||||||||||
Sbjct: 7436 cctgcaggagctgagcaacg 7455


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,818,427
Number of Sequences: 3902068
Number of extensions: 4818427
Number of successful extensions: 93243
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92689
Number of HSP's gapped (non-prelim): 554
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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