ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart24d11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 83.8 bits (42), Expect = 6e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 208 ggctggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaact 267 |||||||||||||| |||||||||| || |||||||| || ||||| |||||||||||| Sbjct: 30314210 ggctggtgccggcggtgtacgtgttgggcgactcgacgctggacgtcggcaacaacaacc 30314151 Query: 268 acttgccggggccgaacgtgcccagggctaacatgcccttcaacggcgtcgacttccc 325 || |||||||| |||| || ||||| |||| ||||| | ||||| |||||||||| Sbjct: 30314150 acctgccggggaaagacgtccctagggccaacaagccctactacggcatcgacttccc 30314093 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 230 gttcggggactcgaccctagacgtgggcaacaacaactacttgcc 274 |||||| ||||||||| | ||||| ||||||||||||||| |||| Sbjct: 2546108 gttcggtgactcgaccgtcgacgttggcaacaacaactacctgcc 2546152 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 351 ttcagcaacggctaccacgtcgccgacttcat 382 |||||||| |||||| |||||||||||||||| Sbjct: 30323746 ttcagcaatggctacaacgtcgccgacttcat 30323715 Score = 44.1 bits (22), Expect = 0.51 Identities = 49/58 (84%) Strand = Plus / Minus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||| ||||| ||| |||| | || |||||||| || ||||| ||||||||||||||| Sbjct: 30323882 ggtggcggcggtgttcgtgctgggtgactcgacgctggacgtcggcaacaacaactac 30323825 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 480 aactatgcttctgccggagccggcatcctggactccac 517 |||||||||||||||||||| || || || |||||||| Sbjct: 30313846 aactatgcttctgccggagctgggattctcgactccac 30313809 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 212 ggtgccggcgatgtacgtgttcggggactcgac 244 |||||||||| || |||||||||||||||||| Sbjct: 25492459 ggtgccggcggtgatcgtgttcggggactcgac 25492427
>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548E04 Length = 138037 Score = 83.8 bits (42), Expect = 6e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 208 ggctggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaact 267 |||||||||||||| |||||||||| || |||||||| || ||||| |||||||||||| Sbjct: 60805 ggctggtgccggcggtgtacgtgttgggcgactcgacgctggacgtcggcaacaacaacc 60746 Query: 268 acttgccggggccgaacgtgcccagggctaacatgcccttcaacggcgtcgacttccc 325 || |||||||| |||| || ||||| |||| ||||| | ||||| |||||||||| Sbjct: 60745 acctgccggggaaagacgtccctagggccaacaagccctactacggcatcgacttccc 60688 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 351 ttcagcaacggctaccacgtcgccgacttcat 382 |||||||| |||||| |||||||||||||||| Sbjct: 70341 ttcagcaatggctacaacgtcgccgacttcat 70310 Score = 44.1 bits (22), Expect = 0.51 Identities = 49/58 (84%) Strand = Plus / Minus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||| ||||| ||| |||| | || |||||||| || ||||| ||||||||||||||| Sbjct: 70477 ggtggcggcggtgttcgtgctgggtgactcgacgctggacgtcggcaacaacaactac 70420 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Minus Query: 480 aactatgcttctgccggagccggcatcctggactccac 517 |||||||||||||||||||| || || || |||||||| Sbjct: 60441 aactatgcttctgccggagctgggattctcgactccac 60404
>dbj|AK110292.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-G01, full insert sequence Length = 1588 Score = 83.8 bits (42), Expect = 6e-13 Identities = 99/118 (83%) Strand = Plus / Plus Query: 208 ggctggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaact 267 |||||||||||||| |||||||||| || |||||||| || ||||| |||||||||||| Sbjct: 287 ggctggtgccggcggtgtacgtgttgggcgactcgacgctggacgtcggcaacaacaacc 346 Query: 268 acttgccggggccgaacgtgcccagggctaacatgcccttcaacggcgtcgacttccc 325 || |||||||| |||| || ||||| |||| ||||| | ||||| |||||||||| Sbjct: 347 acctgccggggaaagacgtccctagggccaacaagccctactacggcatcgacttccc 404 Score = 44.1 bits (22), Expect = 0.51 Identities = 34/38 (89%) Strand = Plus / Plus Query: 480 aactatgcttctgccggagccggcatcctggactccac 517 |||||||||||||||||||| || || || |||||||| Sbjct: 553 aactatgcttctgccggagctgggattctcgactccac 590
>gb|BT018454.1| Zea mays clone EL01N0408D11.d mRNA sequence Length = 1429 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactactt 271 |||||||||||||||||||||||| ||||| || |||||||||| |||||||||||| Sbjct: 208 ggtgccggcgatgtacgtgttcggcgactccacggcggacgtgggcaccaacaactactt 267 Query: 272 gccggg 277 |||||| Sbjct: 268 gccggg 273
>dbj|AK065261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J21, full insert sequence Length = 1430 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 351 ttcagcaacggctaccacgtcgccgacttcatcgcaatcaaactgggactgaaggagagc 410 |||||||| |||||| |||||||||||||||| ||||| || ||||| | ||| ||||| Sbjct: 249 ttcagcaatggctacaacgtcgccgacttcatagcaatgaagctggggttcaagaagagc 308 Query: 411 ccgccggcgtatctgtcgctg 431 || ||||| || ||||||||| Sbjct: 309 cctccggcttacctgtcgctg 329 Score = 48.1 bits (24), Expect = 0.033 Identities = 60/72 (83%) Strand = Plus / Plus Query: 495 ggagccggcatcctggactccaccaacgcggggaaacacatcccgctgtcgaggcaggtg 554 ||||||||| | || |||||||| |||| |||||| |||||||||||||| |||| || Sbjct: 408 ggagccggcgttctcgactccacttacgcagggaaatgcatcccgctgtcgacgcagctg 467 Query: 555 cggtacatggag 566 ||| ||||||| Sbjct: 468 cggagcatggag 479
>ref|XM_467708.1| Oryza sativa (japonica cultivar-group), mRNA Length = 872 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 210 ctggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||||| |||||||| | ||||| || |||||| | ||| Sbjct: 345 ctggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtac 404 Query: 270 ttgccgggg 278 |||||||| Sbjct: 405 ctgccgggg 413 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 349 ggttcagcaacggctaccacgtcgccgacttcatcg 384 |||||||||| |||||| |||||||||||||||||| Sbjct: 472 ggttcagcaatggctacaacgtcgccgacttcatcg 507
>ref|XM_506961.1| PREDICTED Oryza sativa (japonica cultivar-group), P0516G10.12-1 mRNA Length = 1637 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 349 ggttcagcaacggctaccacgtcgccgacttcatcgc 385 |||||||||| |||||| ||||||||||||||||||| Sbjct: 469 ggttcagcaatggctacaacgtcgccgacttcatcgc 505 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 210 ctggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||||| |||||||| | ||||| || |||||| | ||| Sbjct: 342 ctggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtac 401 Query: 270 ttgccgggg 278 |||||||| Sbjct: 402 ctgccgggg 410
>ref|XM_467707.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1637 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 349 ggttcagcaacggctaccacgtcgccgacttcatcgc 385 |||||||||| |||||| ||||||||||||||||||| Sbjct: 468 ggttcagcaatggctacaacgtcgccgacttcatcgc 504 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 210 ctggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||||| |||||||| | ||||| || |||||| | ||| Sbjct: 341 ctggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtac 400 Query: 270 ttgccgggg 278 |||||||| Sbjct: 401 ctgccgggg 409
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 210 ctggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||||| |||||||| | ||||| || |||||| | ||| Sbjct: 30985748 ctggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtac 30985689 Query: 270 ttgccgggg 278 |||||||| Sbjct: 30985688 ctgccgggg 30985680 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 349 ggttcagcaacggctaccacgtcgccgacttcatcg 384 |||||||||| |||||| |||||||||||||||||| Sbjct: 30985621 ggttcagcaatggctacaacgtcgccgacttcatcg 30985586 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 227 cgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 ||||||||| |||||||| | ||||||||||||||||||||| Sbjct: 27176385 cgtgttcggcgactcgacggttgacgtgggcaacaacaactac 27176343 Score = 48.1 bits (24), Expect = 0.033 Identities = 51/60 (85%) Strand = Plus / Plus Query: 216 ccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactacttgccg 275 |||||||| | ||||||||||||| | || ||||| ||||||||||||||||||||| Sbjct: 11116836 ccggcgatcttcgtgttcggggacggcatgctggacgttggcaacaacaactacttgccg 11116895 Score = 44.1 bits (22), Expect = 0.51 Identities = 49/58 (84%) Strand = Plus / Minus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||| ||||| || || || ||||||||||||||| Sbjct: 27181098 ggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactac 27181041 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 308 caacggcgtcgacttccccggcggcg 333 |||||| ||||||||||||||||||| Sbjct: 1046438 caacggtgtcgacttccccggcggcg 1046463 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 agtcaaccaaggccgccatg 584 |||||||||||||||||||| Sbjct: 22590919 agtcaaccaaggccgccatg 22590900 Score = 40.1 bits (20), Expect = 8.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 349 ggttcagcaacggctaccacgtcgccgacttcatcg 384 ||||||||||||||||| | | ||||||||||||| Sbjct: 11071048 ggttcagcaacggctacaccatggccgacttcatcg 11071083
>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516G10 Length = 148937 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 210 ctggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||||| |||||||| | ||||| || |||||| | ||| Sbjct: 40704 ctggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtac 40645 Query: 270 ttgccgggg 278 |||||||| Sbjct: 40644 ctgccgggg 40636 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 349 ggttcagcaacggctaccacgtcgccgacttcatcg 384 |||||||||| |||||| |||||||||||||||||| Sbjct: 40577 ggttcagcaatggctacaacgtcgccgacttcatcg 40542
>dbj|AK111360.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H05, full insert sequence Length = 888 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 210 ctggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||||| |||||||| | ||||| || |||||| | ||| Sbjct: 345 ctggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtac 404 Query: 270 ttgccgggg 278 |||||||| Sbjct: 405 ctgccgggg 413 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 349 ggttcagcaacggctaccacgtcgccgacttcatcg 384 |||||||||| |||||| |||||||||||||||||| Sbjct: 472 ggttcagcaatggctacaacgtcgccgacttcatcg 507
>dbj|AK099325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033016K19, full insert sequence Length = 1637 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 349 ggttcagcaacggctaccacgtcgccgacttcatcgc 385 |||||||||| |||||| ||||||||||||||||||| Sbjct: 468 ggttcagcaatggctacaacgtcgccgacttcatcgc 504 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 210 ctggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||||| |||||||| | ||||| || |||||| | ||| Sbjct: 341 ctggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtac 400 Query: 270 ttgccgggg 278 |||||||| Sbjct: 401 ctgccgggg 409
>dbj|AK070261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042P13, full insert sequence Length = 1637 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 349 ggttcagcaacggctaccacgtcgccgacttcatcgc 385 |||||||||| |||||| ||||||||||||||||||| Sbjct: 469 ggttcagcaatggctacaacgtcgccgacttcatcgc 505 Score = 50.1 bits (25), Expect = 0.008 Identities = 58/69 (84%) Strand = Plus / Plus Query: 210 ctggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| || |||||||||| |||||||| | ||||| || |||||| | ||| Sbjct: 342 ctggtgccggcggtgcacgtgttcggcgactcgacggtggacgtcgggaacaaccagtac 401 Query: 270 ttgccgggg 278 |||||||| Sbjct: 402 ctgccgggg 410
>ref|XM_473495.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaact 267 ||||||||| |||| ||||||||||||||| || | ||||| ||||||||||||| Sbjct: 87 ggtgccggccatgttcgtgttcggggactccacggtggacgtcggcaacaacaact 142
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaact 267 ||||||||| |||| ||||||||||||||| || | ||||| ||||||||||||| Sbjct: 105514 ggtgccggccatgttcgtgttcggggactccacggtggacgtcggcaacaacaact 105459
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaact 267 ||||||||| |||| ||||||||||||||| || | ||||| ||||||||||||| Sbjct: 28098289 ggtgccggccatgttcgtgttcggggactccacggtggacgtcggcaacaacaact 28098234
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 227 cgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 ||||||||| |||||||| | ||||||||||||||||||||| Sbjct: 72834 cgtgttcggcgactcgacggttgacgtgggcaacaacaactac 72792 Score = 44.1 bits (22), Expect = 0.51 Identities = 49/58 (84%) Strand = Plus / Minus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||| ||||| || || || ||||||||||||||| Sbjct: 77547 ggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactac 77490
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 227 cgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 ||||||||| |||||||| | ||||||||||||||||||||| Sbjct: 27056 cgtgttcggcgactcgacggttgacgtgggcaacaacaactac 27014 Score = 44.1 bits (22), Expect = 0.51 Identities = 49/58 (84%) Strand = Plus / Minus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||| ||||| || || || ||||||||||||||| Sbjct: 31769 ggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactac 31712
>gb|BT018449.1| Zea mays clone EL01N0407B08.d mRNA sequence Length = 1302 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 213 gtgccggcgatgtacgtgttcggggactcg 242 ||||||||||||| |||||||||||||||| Sbjct: 39 gtgccggcgatgttcgtgttcggggactcg 68
>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01, complete sequence Length = 173074 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactc 241 |||||||||||||| ||||||||||||||| Sbjct: 113959 ggtgccggcgatgttcgtgttcggggactc 113988
>gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0004M10, complete sequence Length = 152423 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 ||||||| |||||||| ||||||| ||||| || |||||| ||||||||||||||| Sbjct: 80796 ggtgccgacgatgtacatgttcggcgactccacgacagacgtcggcaacaacaactac 80853
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 ||||||| |||||||| ||||||| ||||| || |||||| ||||||||||||||| Sbjct: 15818996 ggtgccgacgatgtacatgttcggcgactccacgacagacgtcggcaacaacaactac 15819053
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 ||||||| |||||||| ||||||| ||||| || |||||| ||||||||||||||| Sbjct: 21912127 ggtgccgacgatgtacatgttcggcgactccacgacagacgtcggcaacaacaactac 21912184 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 211 tggtgccggcgatgtacgtgttcggggactcg 242 ||||||||||| ||| ||||||||| |||||| Sbjct: 680102 tggtgccggcgctgttcgtgttcggcgactcg 680133
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactc 241 |||||||||||||| ||||||||||||||| Sbjct: 20442214 ggtgccggcgatgttcgtgttcggggactc 20442243
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 ||||||| |||||||| ||||||| ||||| || |||||| ||||||||||||||| Sbjct: 15813530 ggtgccgacgatgtacatgttcggcgactccacgacagacgtcggcaacaacaactac 15813587
>dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0409A07 Length = 146663 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 ||||||| |||||||| ||||||| ||||| || |||||| ||||||||||||||| Sbjct: 112796 ggtgccgacgatgtacatgttcggcgactccacgacagacgtcggcaacaacaactac 112853
>dbj|AK100958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140K23, full insert sequence Length = 1556 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactc 241 |||||||||||||| ||||||||||||||| Sbjct: 205 ggtgccggcgatgttcgtgttcggggactc 234
>ref|NM_191210.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 310 acggcgtcgacttccccggcggcgc 334 ||||||||||||||||||||||||| Sbjct: 173 acggcgtcgacttccccggcggcgc 197
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 310 acggcgtcgacttccccggcggcgc 334 ||||||||||||||||||||||||| Sbjct: 31324962 acggcgtcgacttccccggcggcgc 31324986 Score = 40.1 bits (20), Expect = 8.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 231 ttcggggactcgaccctagacgtgggcaacaacaac 266 ||||||||||| || || |||| ||||||||||||| Sbjct: 35599146 ttcggggactccacgctcgacgcgggcaacaacaac 35599181
>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0481E12 Length = 161563 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 310 acggcgtcgacttccccggcggcgc 334 ||||||||||||||||||||||||| Sbjct: 79245 acggcgtcgacttccccggcggcgc 79269
>dbj|AP003632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0624B04 Length = 72745 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 230 gttcggggactcgaccctagacgtgggcaacaacaactacttgcc 274 |||||| ||||||||| | ||||| ||||||||||||||| |||| Sbjct: 45310 gttcggtgactcgaccgtcgacgttggcaacaacaactacctgcc 45354
>dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710H01 Length = 187107 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 230 gttcggggactcgaccctagacgtgggcaacaacaactacttgcc 274 |||||| ||||||||| | ||||| ||||||||||||||| |||| Sbjct: 1449 gttcggtgactcgaccgtcgacgttggcaacaacaactacctgcc 1493
>dbj|AK099064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157L13, full insert sequence Length = 1590 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 230 gttcggggactcgaccctagacgtgggcaacaacaactacttgcc 274 |||||| ||||||||| | ||||| ||||||||||||||| |||| Sbjct: 166 gttcggtgactcgaccgtcgacgttggcaacaacaactacctgcc 210
>dbj|AK067418.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102M08, full insert sequence Length = 1590 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 230 gttcggggactcgaccctagacgtgggcaacaacaactacttgcc 274 |||||| ||||||||| | ||||| ||||||||||||||| |||| Sbjct: 166 gttcggtgactcgaccgtcgacgttggcaacaacaactacctgcc 210
>ref|XM_465045.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1570 Score = 48.1 bits (24), Expect = 0.033 Identities = 51/60 (85%) Strand = Plus / Plus Query: 216 ccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactacttgccg 275 |||||||| | ||||||||||||| | || ||||| ||||||||||||||||||||| Sbjct: 354 ccggcgatcttcgtgttcggggacggcatgctggacgttggcaacaacaactacttgccg 413
>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_E11 Length = 133524 Score = 48.1 bits (24), Expect = 0.033 Identities = 51/60 (85%) Strand = Plus / Plus Query: 216 ccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactacttgccg 275 |||||||| | ||||||||||||| | || ||||| ||||||||||||||||||||| Sbjct: 99530 ccggcgatcttcgtgttcggggacggcatgctggacgttggcaacaacaactacttgccg 99589 Score = 40.1 bits (20), Expect = 8.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 349 ggttcagcaacggctaccacgtcgccgacttcatcg 384 ||||||||||||||||| | | ||||||||||||| Sbjct: 53742 ggttcagcaacggctacaccatggccgacttcatcg 53777
>dbj|AP003988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1057_D08 Length = 119557 Score = 48.1 bits (24), Expect = 0.033 Identities = 51/60 (85%) Strand = Plus / Plus Query: 216 ccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactacttgccg 275 |||||||| | ||||||||||||| | || ||||| ||||||||||||||||||||| Sbjct: 36015 ccggcgatcttcgtgttcggggacggcatgctggacgttggcaacaacaactacttgccg 36074
>dbj|AK106688.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-C04, full insert sequence Length = 1570 Score = 48.1 bits (24), Expect = 0.033 Identities = 51/60 (85%) Strand = Plus / Plus Query: 216 ccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactacttgccg 275 |||||||| | ||||||||||||| | || ||||| ||||||||||||||||||||| Sbjct: 354 ccggcgatcttcgtgttcggggacggcatgctggacgttggcaacaacaactacttgccg 413
>ref|XM_465038.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1397 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 349 ggttcagcaacggctaccacgtcgccgacttcatcgcaa 387 ||||||||||||||||| | | |||||||||||||||| Sbjct: 257 ggttcagcaacggctacaccatggccgacttcatcgcaa 295
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 216 ccggcgatgtacgtgttcggggactcg 242 |||||||||||||||||||| |||||| Sbjct: 23332594 ccggcgatgtacgtgttcggcgactcg 23332568
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 227 cgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||||||||| | |||| ||||||||||||||| Sbjct: 2405754 cgtgttcggggactcgacggtcgacgccggcaacaacaactac 2405796
>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0095O23 Length = 159792 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 227 cgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||||||||| | |||| ||||||||||||||| Sbjct: 84164 cgtgttcggggactcgacggtcgacgccggcaacaacaactac 84206
>dbj|AK101883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070K23, full insert sequence Length = 1397 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 349 ggttcagcaacggctaccacgtcgccgacttcatcgcaa 387 ||||||||||||||||| | | |||||||||||||||| Sbjct: 257 ggttcagcaacggctacaccatggccgacttcatcgcaa 295
>dbj|AK071697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108M03, full insert sequence Length = 1582 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 216 ccggcgatgtacgtgttcggggactcg 242 |||||||||||||||||||| |||||| Sbjct: 160 ccggcgatgtacgtgttcggcgactcg 186
>dbj|AK070277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050D08, full insert sequence Length = 1741 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 216 ccggcgatgtacgtgttcggggactcg 242 |||||||||||||||||||| |||||| Sbjct: 160 ccggcgatgtacgtgttcggcgactcg 186
>dbj|AK061026.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-F09, full insert sequence Length = 1248 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 227 cgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||||||||| | |||| ||||||||||||||| Sbjct: 123 cgtgttcggggactcgacggtcgacgccggcaacaacaactac 165
>dbj|AK060201.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-G04, full insert sequence Length = 1637 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 216 ccggcgatgtacgtgttcggggactcg 242 |||||||||||||||||||| |||||| Sbjct: 234 ccggcgatgtacgtgttcggcgactcg 260
>dbj|AK060124.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H03, full insert sequence Length = 1077 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 227 cgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||||||||| | |||| ||||||||||||||| Sbjct: 123 cgtgttcggggactcgacggtcgacgccggcaacaacaactac 165
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 216 ccggcgatgtacgtgttcggggactcg 242 |||||||||||||||||||| |||||| Sbjct: 23260785 ccggcgatgtacgtgttcggcgactcg 23260759
>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 168063 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 216 ccggcgatgtacgtgttcggggactcg 242 |||||||||||||||||||| |||||| Sbjct: 145712 ccggcgatgtacgtgttcggcgactcg 145686
>ref|XM_463902.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1137 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 308 caacggcgtcgacttccccggcggcg 333 |||||| ||||||||||||||||||| Sbjct: 192 caacggtgtcgacttccccggcggcg 217
>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0088N06 Length = 123454 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 308 caacggcgtcgacttccccggcggcg 333 |||||| ||||||||||||||||||| Sbjct: 35146 caacggtgtcgacttccccggcggcg 35171
>dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1217_F02 Length = 118822 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 308 caacggcgtcgacttccccggcggcg 333 |||||| ||||||||||||||||||| Sbjct: 117857 caacggtgtcgacttccccggcggcg 117882
>dbj|AK103585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133B12, full insert sequence Length = 1312 Score = 44.1 bits (22), Expect = 0.51 Identities = 49/58 (84%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||| ||||| || || || ||||||||||||||| Sbjct: 98 ggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactac 155
>dbj|AK103166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121E13, full insert sequence Length = 2958 Score = 44.1 bits (22), Expect = 0.51 Identities = 49/58 (84%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||| ||||| || || || ||||||||||||||| Sbjct: 117 ggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactac 174
>dbj|AK059531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-D08, full insert sequence Length = 1451 Score = 44.1 bits (22), Expect = 0.51 Identities = 49/58 (84%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaactac 269 |||||||||||| ||||||||||| ||||| || || || ||||||||||||||| Sbjct: 117 ggtgccggcgatatacgtgttcggcgactccacggccgatgtcggcaacaacaactac 174
>gb|AE009281.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 51 of 187 of the complete sequence Length = 11689 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 gccggcggcccgggcaagatg 203 ||||||||||||||||||||| Sbjct: 2893 gccggcggcccgggcaagatg 2913
>gb|AE008331.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 135 of 187 of the complete sequence Length = 10765 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 gccggcggcccgggcaagatg 203 ||||||||||||||||||||| Sbjct: 8798 gccggcggcccgggcaagatg 8778
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 gtgccgccgccggcggcccgg 195 ||||||||||||||||||||| Sbjct: 6408600 gtgccgccgccggcggcccgg 6408620 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 agtcaaccaaggccgccatg 584 |||||||||||||||||||| Sbjct: 3949553 agtcaaccaaggccgccatg 3949572
>ref|XM_230778.3| PREDICTED: Rattus norvegicus similar to KIAA0980 protein (predicted) (LOC311529), mRNA Length = 5358 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 490 ctgccggagccggcatcctggactc 514 ||||||||||| ||||||||||||| Sbjct: 206 ctgccggagcccgcatcctggactc 230
>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0523F01 Length = 146419 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 212 ggtgccggcgatgtacgtgttcggggactcgac 244 |||||||||| || |||||||||||||||||| Sbjct: 10776 ggtgccggcggtgatcgtgttcggggactcgac 10744
>dbj|AP003963.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1779_B07 Length = 151427 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 gtgccgccgccggcggcccgg 195 ||||||||||||||||||||| Sbjct: 65167 gtgccgccgccggcggcccgg 65187
>dbj|AK107820.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-F12, full insert sequence Length = 755 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 175 gtgccgccgccggcggcccgg 195 ||||||||||||||||||||| Sbjct: 444 gtgccgccgccggcggcccgg 424
>dbj|AK058562.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D11, full insert sequence Length = 1388 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 212 ggtgccggcgatgtacgtgttcggggactcgac 244 |||||||||| || |||||||||||||||||| Sbjct: 218 ggtgccggcggtgatcgtgttcggggactcgac 250
>gb|U83642.1|MUSSPDOT05 Mus caroli Sp100 gene, exon 5 Length = 280 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 gagaaaccaatccagagttca 41 ||||||||||||||||||||| Sbjct: 108 gagaaaccaatccagagttca 88
>ref|NM_202727.1| Arabidopsis thaliana MTPA2; efflux permease/ zinc ion transporter AT3G58810 (MTPA2) transcript variant AT3G58810.2 mRNA, complete cds Length = 1924 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gaccatggtcatggtcatgg 102 |||||||||||||||||||| Sbjct: 1180 gaccatggtcatggtcatgg 1199
>ref|NM_115743.3| Arabidopsis thaliana MTPA2; efflux permease/ zinc ion transporter AT3G58810 (MTPA2) transcript variant AT3G58810.1 mRNA, complete cds Length = 2041 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gaccatggtcatggtcatgg 102 |||||||||||||||||||| Sbjct: 1297 gaccatggtcatggtcatgg 1316
>ref|XM_507096.1| PREDICTED Oryza sativa (japonica cultivar-group), P0498H04.26 mRNA Length = 1449 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 211 tggtgccggcgatgtacgtgttcggggactcg 242 ||||||||||| ||| ||||||||| |||||| Sbjct: 155 tggtgccggcgctgttcgtgttcggcgactcg 186
>ref|XM_479754.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1327 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 211 tggtgccggcgatgtacgtgttcggggactcg 242 ||||||||||| ||| ||||||||| |||||| Sbjct: 163 tggtgccggcgctgttcgtgttcggcgactcg 194
>ref|NM_196683.1| Oryza sativa (japonica cultivar-group) putative anter-specific proline-rich protein (OSJNBb0016G17.12), mRNA Length = 1077 Score = 40.1 bits (20), Expect = 8.0 Identities = 44/52 (84%) Strand = Plus / Plus Query: 215 gccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaac 266 ||||||| ||| ||||||||||||||| | | | |||| |||||||||||| Sbjct: 108 gccggcgctgttcgtgttcggggactccatcgtggacgccggcaacaacaac 159
>ref|NM_190450.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1140 Score = 40.1 bits (20), Expect = 8.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 231 ttcggggactcgaccctagacgtgggcaacaacaac 266 ||||||||||| || || |||| ||||||||||||| Sbjct: 139 ttcggggactccacgctcgacgcgggcaacaacaac 174
>ref|XM_476799.1| Oryza sativa (japonica cultivar-group), mRNA Length = 810 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 agtcaaccaaggccgccatg 584 |||||||||||||||||||| Sbjct: 808 agtcaaccaaggccgccatg 789
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 aaggctggtgccggcgatgt 225 |||||||||||||||||||| Sbjct: 799963 aaggctggtgccggcgatgt 799944
>gb|AY591907.1| Gallus gallus SP9 mRNA, partial cds Length = 1173 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 gccgccgccggcggcccgggcaag 200 ||||||||| |||||||||||||| Sbjct: 451 gccgccgcccgcggcccgggcaag 474
>gb|AY383180.1| Loxigilla violacea specimen voucher AMNH 25433 NADH dehydrogenase subunit 2 (ND2) gene, partial cds; mitochondrial Length = 330 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 tcgcaatcaaactgggactg 401 |||||||||||||||||||| Sbjct: 305 tcgcaatcaaactgggactg 324
>ref|XM_366274.1| Magnaporthe grisea 70-15 hypothetical protein (MG10493.4) partial mRNA Length = 1749 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gaccatggtcatggtcatgg 102 |||||||||||||||||||| Sbjct: 1138 gaccatggtcatggtcatgg 1157
>gb|AF383137.1| Microligea palustris NADH dehydrogenase subunit II (ND2) gene, complete cds; mitochondrial Length = 1041 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 atcgcaatcaaactgggact 400 |||||||||||||||||||| Sbjct: 304 atcgcaatcaaactgggact 323
>gb|DQ002910.1| Oryzias latipes Her7 mRNA, complete cds Length = 606 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 actatgcttctgccggagcc 500 |||||||||||||||||||| Sbjct: 112 actatgcttctgccggagcc 131
>gb|AC158614.5| Mus musculus 10 BAC RP23-76C5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 223468 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 gaccatggtcatggtcatgg 102 |||||||||||||||||||| Sbjct: 124555 gaccatggtcatggtcatgg 124536
>ref|XM_544462.2| PREDICTED: Canis familiaris platelet-activating factor receptor (LOC487336), mRNA Length = 1032 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 catcctggactccaccaacg 522 |||||||||||||||||||| Sbjct: 462 catcctggactccaccaacg 481
>emb|AL353032.1|ATT20N10 Arabidopsis thaliana DNA chromosome 3, BAC clone T20N10 Length = 90273 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gaccatggtcatggtcatgg 102 |||||||||||||||||||| Sbjct: 51117 gaccatggtcatggtcatgg 51136
>emb|AL604063.4| Mouse DNA sequence from clone RP23-467J12 on chromosome 11, complete sequence Length = 146759 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tcctgaagcaagttttataa 64 |||||||||||||||||||| Sbjct: 102957 tcctgaagcaagttttataa 102976
>gb|AC023102.6| Homo sapiens chromosome 8, clone RP11-414L17, complete sequence Length = 175263 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tgccgccgccggcggcccgg 195 |||||||||||||||||||| Sbjct: 79247 tgccgccgccggcggcccgg 79228
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17, complete sequence Length = 141041 Score = 40.1 bits (20), Expect = 8.0 Identities = 44/52 (84%) Strand = Plus / Minus Query: 215 gccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaac 266 ||||||| ||| ||||||||||||||| | | | |||| |||||||||||| Sbjct: 76289 gccggcgctgttcgtgttcggggactccatcgtggacgccggcaacaacaac 76238
>gb|AF394636.1|AF394636 Megapodius pritchardii isolate cons.mpi. tRNA-Met gene, partial sequence; NADH dehydrogenase subunit 2 (ND2) gene, complete cds; and tRNA-Trp gene, partial sequence; mitochondrial genes for mitochondrial products Length = 1072 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 atcgcaatcaaactgggact 400 |||||||||||||||||||| Sbjct: 324 atcgcaatcaaactgggact 343
>gb|AF394635.1|AF394635 Megapodius layardi isolate cons.mly. tRNA-Met gene, partial sequence; NADH dehydrogenase subunit 2 (ND2) gene, complete cds; and tRNA-Trp gene, partial sequence; mitochondrial genes for mitochondrial products Length = 1072 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 atcgcaatcaaactgggact 400 |||||||||||||||||||| Sbjct: 324 atcgcaatcaaactgggact 343
>gb|AF394634.1|AF394634 Megapodius layardi isolate cons.mld. tRNA-Met gene, partial sequence; NADH dehydrogenase subunit 2 (ND2) gene, complete cds; and tRNA-Trp gene, partial sequence; mitochondrial genes for mitochondrial products Length = 1072 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 atcgcaatcaaactgggact 400 |||||||||||||||||||| Sbjct: 324 atcgcaatcaaactgggact 343
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 gcccgggcaagatggtaaggctgg 213 |||||| ||||||||||||||||| Sbjct: 1115345 gcccggccaagatggtaaggctgg 1115368
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.0 Identities = 44/52 (84%) Strand = Plus / Minus Query: 215 gccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaac 266 ||||||| ||| ||||||||||||||| | | | |||| |||||||||||| Sbjct: 15222590 gccggcgctgttcgtgttcggggactccatcgtggacgccggcaacaacaac 15222539
>emb|BX822173.1|CNS0A66D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB18ZA05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1982 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gaccatggtcatggtcatgg 102 |||||||||||||||||||| Sbjct: 1297 gaccatggtcatggtcatgg 1316
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446G04 Length = 143515 Score = 40.1 bits (20), Expect = 8.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 231 ttcggggactcgaccctagacgtgggcaacaacaac 266 ||||||||||| || || |||| ||||||||||||| Sbjct: 129333 ttcggggactccacgctcgacgcgggcaacaacaac 129368
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496D04 Length = 197358 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 agtcaaccaaggccgccatg 584 |||||||||||||||||||| Sbjct: 188665 agtcaaccaaggccgccatg 188684
>dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460C04 Length = 189043 Score = 40.1 bits (20), Expect = 8.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 231 ttcggggactcgaccctagacgtgggcaacaacaac 266 ||||||||||| || || |||| ||||||||||||| Sbjct: 2483 ttcggggactccacgctcgacgcgggcaacaacaac 2518
>dbj|AP003843.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1656_E11 Length = 116211 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 agtcaaccaaggccgccatg 584 |||||||||||||||||||| Sbjct: 52279 agtcaaccaaggccgccatg 52298
>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056I22 Length = 147728 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 agtcaaccaaggccgccatg 584 |||||||||||||||||||| Sbjct: 38730 agtcaaccaaggccgccatg 38711
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 211 tggtgccggcgatgtacgtgttcggggactcg 242 ||||||||||| ||| ||||||||| |||||| Sbjct: 107480 tggtgccggcgctgttcgtgttcggcgactcg 107511
>emb|Z50180.1|NGPILC1GN N.gonorrhoeae pilC1 gene Length = 3567 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cccgggcaagatggtaaggc 210 |||||||||||||||||||| Sbjct: 1420 cccgggcaagatggtaaggc 1439
>emb|Z98186.1|CHSVMATK Secamone volubilis chloroplast mRNA for maturase Length = 1554 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 accatggtcatggtcatggg 103 |||||||||||||||||||| Sbjct: 114 accatggtcatggtcatggg 95
>dbj|AK105876.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B10, full insert sequence Length = 1449 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 211 tggtgccggcgatgtacgtgttcggggactcg 242 ||||||||||| ||| ||||||||| |||||| Sbjct: 155 tggtgccggcgctgttcgtgttcggcgactcg 186
>dbj|AK069672.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027A20, full insert sequence Length = 1327 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 211 tggtgccggcgatgtacgtgttcggggactcg 242 ||||||||||| ||| ||||||||| |||||| Sbjct: 163 tggtgccggcgctgttcgtgttcggcgactcg 194
>gb|AF186831.1|AF186831 Canis familiaris platelet-activating factor receptor gene, partial cds Length = 888 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 catcctggactccaccaacg 522 |||||||||||||||||||| Sbjct: 435 catcctggactccaccaacg 454
>dbj|AK065583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034G20, full insert sequence Length = 1505 Score = 40.1 bits (20), Expect = 8.0 Identities = 44/52 (84%) Strand = Plus / Plus Query: 215 gccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaac 266 ||||||| ||| ||||||||||||||| | | | |||| |||||||||||| Sbjct: 152 gccggcgctgttcgtgttcggggactccatcgtggacgccggcaacaacaac 203
>dbj|AK064727.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A02, full insert sequence Length = 1381 Score = 40.1 bits (20), Expect = 8.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 231 ttcggggactcgaccctagacgtgggcaacaacaac 266 ||||||||||| || || |||| ||||||||||||| Sbjct: 183 ttcggggactccacgctcgacgcgggcaacaacaac 218
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.0 Identities = 44/52 (84%) Strand = Plus / Minus Query: 215 gccggcgatgtacgtgttcggggactcgaccctagacgtgggcaacaacaac 266 ||||||| ||| ||||||||||||||| | | | |||| |||||||||||| Sbjct: 15230831 gccggcgctgttcgtgttcggggactccatcgtggacgccggcaacaacaac 15230780
>gb|AY899954.1| Secamone oleifolia voucher Civeyrel 1770 maturase (matK) gene, partial cds; chloroplast Length = 1495 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 accatggtcatggtcatggg 103 |||||||||||||||||||| Sbjct: 82 accatggtcatggtcatggg 63
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 gccgccgccggcggcccgggcaag 200 |||||||||||||| ||||||||| Sbjct: 1271852 gccgccgccggcggtccgggcaag 1271829 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,197,996 Number of Sequences: 3902068 Number of extensions: 4197996 Number of successful extensions: 82226 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80583 Number of HSP's gapped (non-prelim): 1637 length of query: 585 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 562 effective length of database: 17,143,297,704 effective search space: 9634533309648 effective search space used: 9634533309648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
