ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart24d02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 71.9 bits (36), Expect = 2e-09 Identities = 93/112 (83%) Strand = Plus / Plus Query: 125 atggtgctgcccttccccgcgcagggccatgtgatcccactcatggagctgtctcgcaag 184 ||||||||||||||||| || ||||| ||| | || || |||||||||||||| | | Sbjct: 129493 atggtgctgcccttccctgcccagggtcatatcatgccgctcatggagctgtcccaccgc 129552 Query: 185 ctcgccggacacggcgtcgaggtcgacttcgtggacaccgagttcaaccacg 236 |||| || || ||| ||||||||||||||||| ||||||| |||||||||| Sbjct: 129553 ctcgtcgaccatggcttcgaggtcgacttcgtgaacaccgacttcaaccacg 129604 Score = 60.0 bits (30), Expect = 8e-06 Identities = 96/118 (81%) Strand = Plus / Plus Query: 117 ctcgtgtgatggtgctgcccttccccgcgcagggccatgtgatcccactcatggagctgt 176 ||||||| ||| ||||||| || |||||||||||||||| || || ||||||||||| | Sbjct: 126928 ctcgtgtaatgatgctgccgttggccgcgcagggccatgtcatgcccctcatggagctct 126987 Query: 177 ctcgcaagctcgccggacacggcgtcgaggtcgacttcgtggacaccgagttcaacca 234 | | | ||||| || ||||| ||||||||| ||||||| |||| || |||||||| Sbjct: 126988 cccacctgctcgtcgagcacggattcgaggtcgtcttcgtgaacacggacttcaacca 127045 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 acaccgagttcaaccacgacc 239 ||||||||||||||||||||| Sbjct: 132273 acaccgagttcaaccacgacc 132293 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 125 atggtgctgcccttccccgcgcagggccatgtgatcccactcatggagctgtc 177 |||||||| |||||||| || || || ||||| || |||||||||||| |||| Sbjct: 132179 atggtgctacccttccctgcacaaggtcatgtcattccactcatggagttgtc 132231 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 139 ccccgcgcagggccatgtgatcccactcatggagct 174 |||||||||||||||||| | |||| | |||||||| Sbjct: 122437 ccccgcgcagggccatgtcaccccaatgatggagct 122472
>ref|XM_469832.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1347 Score = 63.9 bits (32), Expect = 5e-07 Identities = 116/144 (80%) Strand = Plus / Plus Query: 407 aagatcaactgggtgatcgtggatgtatccatgagctgggcactggagctggccaccacg 466 ||||| || ||||| || || ||||||||||||||||||||||| || ||||| ||||| Sbjct: 310 aagataaagtgggtaatagtagatgtatccatgagctgggcactagaactggctaccaca 369 Query: 467 gcgggtgcccgtgttgcctccttctcgacctattccgcggccgtgttttctctcaggatg 526 ||||| |||| |||||| ||||| || || ||||| || | ||| | ||||||||| Sbjct: 370 atgggtgtccgtattgccttgttctcaacttactccgcagctatctttgcactcaggatg 429 Query: 527 aacctccccagattgatagaggat 550 ||||| || | | ||||||||||| Sbjct: 430 aaccttcctaaactgatagaggat 453 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 104 gctgctactctagctcgtgtgatggtgctgcccttccccgcgcagggccatgtgatccca 163 |||||||||| | ||| ||| |||||||| || ||||| || || |||||||| |||||| Sbjct: 7 gctgctactcaacctcatgtcatggtgctaccgttccctgcacaaggccatgtcatccca 66 Query: 164 ctcatggag 172 ||||||||| Sbjct: 67 ctcatggag 75
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 5e-07 Identities = 116/144 (80%) Strand = Plus / Plus Query: 407 aagatcaactgggtgatcgtggatgtatccatgagctgggcactggagctggccaccacg 466 ||||| || ||||| || || ||||||||||||||||||||||| || ||||| ||||| Sbjct: 30999137 aagataaagtgggtaatagtagatgtatccatgagctgggcactagaactggctaccaca 30999196 Query: 467 gcgggtgcccgtgttgcctccttctcgacctattccgcggccgtgttttctctcaggatg 526 ||||| |||| |||||| ||||| || || ||||| || | ||| | ||||||||| Sbjct: 30999197 atgggtgtccgtattgccttgttctcaacttactccgcagctatctttgcactcaggatg 30999256 Query: 527 aacctccccagattgatagaggat 550 ||||| || | | ||||||||||| Sbjct: 30999257 aaccttcctaaactgatagaggat 30999280 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 104 gctgctactctagctcgtgtgatggtgctgcccttccccgcgcagggccatgtgatccca 163 |||||||||| | ||| ||| |||||||| || ||||| || || |||||||| |||||| Sbjct: 30998834 gctgctactcaacctcatgtcatggtgctaccgttccctgcacaaggccatgtcatccca 30998893 Query: 164 ctcatggag 172 ||||||||| Sbjct: 30998894 ctcatggag 30998902 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 358 cttgccggccgccatgtccggccgcctcgaggagatgatccgatc 402 |||||||||||||||| |||| || |||||||||||||| |||| Sbjct: 30995571 cttgccggccgccatgctcggcggcatcgaggagatgatcagatc 30995615
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence Length = 168759 Score = 63.9 bits (32), Expect = 5e-07 Identities = 116/144 (80%) Strand = Plus / Minus Query: 407 aagatcaactgggtgatcgtggatgtatccatgagctgggcactggagctggccaccacg 466 ||||| || ||||| || || ||||||||||||||||||||||| || ||||| ||||| Sbjct: 96927 aagataaagtgggtaatagtagatgtatccatgagctgggcactagaactggctaccaca 96868 Query: 467 gcgggtgcccgtgttgcctccttctcgacctattccgcggccgtgttttctctcaggatg 526 ||||| |||| |||||| ||||| || || ||||| || | ||| | ||||||||| Sbjct: 96867 atgggtgtccgtattgccttgttctcaacttactccgcagctatctttgcactcaggatg 96808 Query: 527 aacctccccagattgatagaggat 550 ||||| || | | ||||||||||| Sbjct: 96807 aaccttcctaaactgatagaggat 96784 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 104 gctgctactctagctcgtgtgatggtgctgcccttccccgcgcagggccatgtgatccca 163 |||||||||| | ||| ||| |||||||| || ||||| || || |||||||| |||||| Sbjct: 97230 gctgctactcaacctcatgtcatggtgctaccgttccctgcacaaggccatgtcatccca 97171 Query: 164 ctcatggag 172 ||||||||| Sbjct: 97170 ctcatggag 97162 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 358 cttgccggccgccatgtccggccgcctcgaggagatgatccgatc 402 |||||||||||||||| |||| || |||||||||||||| |||| Sbjct: 100493 cttgccggccgccatgctcggcggcatcgaggagatgatcagatc 100449
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 5e-07 Identities = 116/144 (80%) Strand = Plus / Plus Query: 407 aagatcaactgggtgatcgtggatgtatccatgagctgggcactggagctggccaccacg 466 ||||| || ||||| || || ||||||||||||||||||||||| || ||||| ||||| Sbjct: 31089660 aagataaagtgggtaatagtagatgtatccatgagctgggcactagaactggctaccaca 31089719 Query: 467 gcgggtgcccgtgttgcctccttctcgacctattccgcggccgtgttttctctcaggatg 526 ||||| |||| |||||| ||||| || || ||||| || | ||| | ||||||||| Sbjct: 31089720 atgggtgtccgtattgccttgttctcaacttactccgcagctatctttgcactcaggatg 31089779 Query: 527 aacctccccagattgatagaggat 550 ||||| || | | ||||||||||| Sbjct: 31089780 aaccttcctaaactgatagaggat 31089803 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 104 gctgctactctagctcgtgtgatggtgctgcccttccccgcgcagggccatgtgatccca 163 |||||||||| | ||| ||| |||||||| || ||||| || || |||||||| |||||| Sbjct: 31089357 gctgctactcaacctcatgtcatggtgctaccgttccctgcacaaggccatgtcatccca 31089416 Query: 164 ctcatggag 172 ||||||||| Sbjct: 31089417 ctcatggag 31089425 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 358 cttgccggccgccatgtccggccgcctcgaggagatgatccgatc 402 |||||||||||||||| |||| || |||||||||||||| |||| Sbjct: 31086094 cttgccggccgccatgctcggcggcatcgaggagatgatcagatc 31086138
>dbj|AK102229.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087P16, full insert sequence Length = 1502 Score = 63.9 bits (32), Expect = 5e-07 Identities = 116/144 (80%) Strand = Plus / Plus Query: 407 aagatcaactgggtgatcgtggatgtatccatgagctgggcactggagctggccaccacg 466 ||||| || ||||| || || ||||||||||||||||||||||| || ||||| ||||| Sbjct: 353 aagataaagtgggtaatagtagatgtatccatgagctgggcactagaactggctaccaca 412 Query: 467 gcgggtgcccgtgttgcctccttctcgacctattccgcggccgtgttttctctcaggatg 526 ||||| |||| |||||| ||||| || || ||||| || | ||| | ||||||||| Sbjct: 413 atgggtgtccgtattgccttgttctcaacttactccgcagctatctttgcactcaggatg 472 Query: 527 aacctccccagattgatagaggat 550 ||||| || | | ||||||||||| Sbjct: 473 aaccttcctaaactgatagaggat 496 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 104 gctgctactctagctcgtgtgatggtgctgcccttccccgcgcagggccatgtgatccca 163 |||||||||| | ||| ||| |||||||| || ||||| || || |||||||| |||||| Sbjct: 50 gctgctactcaacctcatgtcatggtgctaccgttccctgcacaaggccatgtcatccca 109 Query: 164 ctcatggag 172 ||||||||| Sbjct: 110 ctcatggag 118
>ref|XM_469831.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1374 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 358 cttgccggccgccatgtccggccgcctcgaggagatgatccgatc 402 |||||||||||||||| |||| || |||||||||||||| |||| Sbjct: 276 cttgccggccgccatgctcggcggcatcgaggagatgatcagatc 320
>dbj|AK105674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A10, full insert sequence Length = 1852 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 358 cttgccggccgccatgtccggccgcctcgaggagatgatccgatc 402 |||||||||||||||| |||| || |||||||||||||| |||| Sbjct: 1308 cttgccggccgccatgctcggcggcatcgaggagatgatcagatc 1264
>dbj|AK069049.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003I23, full insert sequence Length = 1680 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 358 cttgccggccgccatgtccggccgcctcgaggagatgatccgatc 402 |||||||||||||||| |||| || |||||||||||||| |||| Sbjct: 313 cttgccggccgccatgctcggcggcatcgaggagatgatcagatc 357
>ref|NM_195670.1| Oryza sativa (japonica cultivar-group) putative glucosyltransferase (OSJNAa0053D03.20), mRNA Length = 549 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 143 gcgcagggccatgtgatcccactcatggagct 174 |||||||||||||| ||||| ||||||||||| Sbjct: 76 gcgcagggccatgtcatcccgctcatggagct 107
>gb|AC131968.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0053D03, complete sequence Length = 150496 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 143 gcgcagggccatgtgatcccactcatggagct 174 |||||||||||||| ||||| ||||||||||| Sbjct: 142529 gcgcagggccatgtcatcccgctcatggagct 142560
>gb|AC098682.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0004A10, from chromosome 10, complete sequence Length = 144271 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 143 gcgcagggccatgtgatcccactcatggagct 174 |||||||||||||| ||||| ||||||||||| Sbjct: 92239 gcgcagggccatgtcatcccgctcatggagct 92208
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 143 gcgcagggccatgtgatcccactcatggagct 174 |||||||||||||| ||||| ||||||||||| Sbjct: 8339007 gcgcagggccatgtcatcccgctcatggagct 8339038 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 137 ttccccgcgcagggccatgtgatcccactcatggag 172 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 8992432 ttcccggcgcagggccacgtcatcccgctcatggag 8992397 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 137 ttccccgcgcagggccatgtgatcccactcatggag 172 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 8913300 ttcccggcgcagggccacgtcatcccgctcatggag 8913265
>dbj|AK106038.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D10, full insert sequence Length = 1666 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 143 gcgcagggccatgtgatcccactcatggagct 174 |||||||||||||| ||||| ||||||||||| Sbjct: 112 gcgcagggccatgtcatcccgctcatggagct 143
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 143 gcgcagggccatgtgatcccactcatggagct 174 |||||||||||||| ||||| ||||||||||| Sbjct: 8344106 gcgcagggccatgtcatcccgctcatggagct 8344137 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 137 ttccccgcgcagggccatgtgatcccactcatggag 172 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 8997571 ttcccggcgcagggccacgtcatcccgctcatggag 8997536 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 137 ttccccgcgcagggccatgtgatcccactcatggag 172 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 8918439 ttcccggcgcagggccacgtcatcccgctcatggag 8918404
>ref|XM_366162.1| Magnaporthe grisea 70-15 chromosome IV hypothetical protein (MG10382.4) partial mRNA Length = 1071 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 482 gcctccttctcgacctattccgcggc 507 |||||||||||||||| ||||||||| Sbjct: 485 gcctccttctcgacctgttccgcggc 510
>gb|AY849684.1| Magnaporthe grisea Brix domain-containing protein-like protein mRNA, complete cds Length = 1103 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 482 gcctccttctcgacctattccgcggc 507 |||||||||||||||| ||||||||| Sbjct: 501 gcctccttctcgacctgttccgcggc 526
>gb|AC098729.3| Mus musculus BAC clone RP23-3H23 from X, complete sequence Length = 213030 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 509 gtgttttctctcaggatgaacctcc 533 ||||||||||| ||||||||||||| Sbjct: 108512 gtgttttctctaaggatgaacctcc 108488
>gb|AC091076.7| Homo sapiens chromosome 8, clone RP11-53M11, complete sequence Length = 162374 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 ctgcccttccccgcgcagggc 151 ||||||||||||||||||||| Sbjct: 121856 ctgcccttccccgcgcagggc 121836
>gb|AC097632.2| Homo sapiens chromosome 3 clone RP11-90H15, complete sequence Length = 131796 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 aagtttgtcaaggacttgccg 364 ||||||||||||||||||||| Sbjct: 111961 aagtttgtcaaggacttgccg 111941
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 gagttcaaccacgacctcgtc 244 ||||||||||||||||||||| Sbjct: 13518794 gagttcaaccacgacctcgtc 13518774
>gb|AY900631.1| Drosophila buzzatii clone BAC 5H14, complete sequence Length = 124024 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 ggcggatgcggctgctgctgctact 112 ||||||||| ||||||||||||||| Sbjct: 19673 ggcggatgctgctgctgctgctact 19649
>dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0459H02 Length = 168230 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 gagttcaaccacgacctcgtc 244 ||||||||||||||||||||| Sbjct: 47284 gagttcaaccacgacctcgtc 47264
>dbj|AP003506.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0428A03 Length = 136799 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 gagttcaaccacgacctcgtc 244 ||||||||||||||||||||| Sbjct: 130218 gagttcaaccacgacctcgtc 130198
>dbj|AK101619.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052I18, full insert sequence Length = 2185 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 gagttcaaccacgacctcgtc 244 ||||||||||||||||||||| Sbjct: 423 gagttcaaccacgacctcgtc 443
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gctcgccggacacggcgtcga 204 ||||||||||||||||||||| Sbjct: 170332 gctcgccggacacggcgtcga 170312
>emb|AL732419.6| Mouse DNA sequence from clone RP23-228A20 on chromosome X, complete sequence Length = 194380 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 509 gtgttttctctcaggatgaacctcc 533 ||||||||||| ||||||||||||| Sbjct: 33116 gtgttttctctaaggatgaacctcc 33092
>ref|NM_195782.1| Oryza sativa (japonica cultivar-group) hypothetical protein similar to putative retroelements (OSJNBa0027A14.16), mRNA Length = 2778 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 137 ttccccgcgcagggccatgtgatcccactcatggag 172 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 52 ttcccggcgcagggccacgtcatcccgctcatggag 87
>ref|NM_195767.1| Oryza sativa (japonica cultivar-group) putative glucosyltransferase (OSJNBa0027A14.1), mRNA Length = 543 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 137 ttccccgcgcagggccatgtgatcccactcatggag 172 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 46 ttcccggcgcagggccacgtcatcccgctcatggag 81
>ref|NM_026739.1| Mus musculus RIKEN cDNA 9530077C05 gene (9530077C05Rik), mRNA Length = 2173 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 gacatcggcaagtttgtcaaggac 358 ||||| |||||||||||||||||| Sbjct: 1364 gacattggcaagtttgtcaaggac 1387
>gb|AC150004.3| Mus musculus chromosome 7, clone RP24-368P9, complete sequence Length = 176113 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 tgttttctctcaggatgaac 529 |||||||||||||||||||| Sbjct: 14654 tgttttctctcaggatgaac 14635
>ref|XM_583076.2| PREDICTED: Bos taurus similar to Mitotic spindle assembly checkpoint protein MAD2B (MAD2-like 2) (hREV7) (LOC506605), mRNA Length = 1166 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 tggcagagaagggagcgattcctc 278 |||| ||||||||||||||||||| Sbjct: 1038 tggcggagaagggagcgattcctc 1015
>ref|XM_957726.1| Neurospora crassa OR74A hypothetical protein (NCU07886.1) partial mRNA Length = 594 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 atggcggatgcggctgctgctgct 109 ||||| |||||||||||||||||| Sbjct: 436 atggctgatgcggctgctgctgct 459
>gb|BC054761.1| Mus musculus RIKEN cDNA 9530077C05 gene, mRNA (cDNA clone MGC:64745 IMAGE:6413638), complete cds Length = 2173 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 gacatcggcaagtttgtcaaggac 358 ||||| |||||||||||||||||| Sbjct: 1364 gacattggcaagtttgtcaaggac 1387
>ref|XM_328591.1| Neurospora crassa OR74A hypothetical protein (NCU07886.1) partial mRNA Length = 594 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 atggcggatgcggctgctgctgct 109 ||||| |||||||||||||||||| Sbjct: 436 atggctgatgcggctgctgctgct 459
>gb|BC039998.1| Mus musculus RIKEN cDNA 9530077C05 gene, mRNA (cDNA clone MGC:48244 IMAGE:3326047), complete cds Length = 1501 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 gacatcggcaagtttgtcaaggac 358 ||||| |||||||||||||||||| Sbjct: 587 gacattggcaagtttgtcaaggac 610
>ref|XM_747180.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g09060) partial mRNA Length = 1539 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ggcggatgcggctgctgctg 107 |||||||||||||||||||| Sbjct: 297 ggcggatgcggctgctgctg 316
>gb|AC124412.3| Mus musculus BAC clone RP24-274J3 from chromosome 9, complete sequence Length = 175945 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 gacatcggcaagtttgtcaaggac 358 ||||| |||||||||||||||||| Sbjct: 174918 gacattggcaagtttgtcaaggac 174895
>ref|XM_849673.1| PREDICTED: Canis familiaris similar to tuberoinfundibular 39 residue protein precursor (LOC611953), mRNA Length = 423 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 cggatgcggctgctgctgct 109 |||||||||||||||||||| Sbjct: 154 cggatgcggctgctgctgct 173
>gb|AC102561.4| Mus musculus chromosome 7, clone RP23-201O19, complete sequence Length = 195549 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 tgttttctctcaggatgaac 529 |||||||||||||||||||| Sbjct: 171943 tgttttctctcaggatgaac 171924
>emb|BX649266.9| Zebrafish DNA sequence from clone DKEY-19J7 in linkage group 9, complete sequence Length = 235135 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 gcggccgtgttttctctcag 522 |||||||||||||||||||| Sbjct: 198674 gcggccgtgttttctctcag 198693
>gb|BC112559.1| Bos taurus similar to Mitotic spindle assembly checkpoint protein MAD2B (MAD2-like 2) (hREV7), mRNA (cDNA clone MGC:137331 IMAGE:8023675), complete cds Length = 1095 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 tggcagagaagggagcgattcctc 278 |||| ||||||||||||||||||| Sbjct: 960 tggcggagaagggagcgattcctc 937
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ccggccgcctcgaggagatg 394 |||||||||||||||||||| Sbjct: 354949 ccggccgcctcgaggagatg 354968
>emb|AL583924.1|MLEPRTN8 Mycobacterium leprae strain TN complete genome; segment 8/10 Length = 342300 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 ggcactggagctggccaccacggc 468 |||||||| ||||||||||||||| Sbjct: 95571 ggcactggcgctggccaccacggc 95594
>emb|AL008609.1|MLCB1788 Mycobacterium leprae cosmid B1788 Length = 39228 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 ggcactggagctggccaccacggc 468 |||||||| ||||||||||||||| Sbjct: 173 ggcactggcgctggccaccacggc 196
>gb|DQ351275.1| Streptomyces sp. NRRL 30748 meridamycin biosynthetic gene cluster and flanking regions Length = 116831 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 acacggcgtcgaggtcgact 212 |||||||||||||||||||| Sbjct: 51164 acacggcgtcgaggtcgact 51183
>gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0008A05, complete sequence Length = 124366 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 137 ttccccgcgcagggccatgtgatcccactcatggag 172 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 117907 ttcccggcgcagggccacgtcatcccgctcatggag 117872
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 128 gtgctgcccttccccgcgcagggccatg 155 ||||||||| || ||||||||||||||| Sbjct: 5359977 gtgctgcccgtcgccgcgcagggccatg 5359950
>dbj|AK220359.1| Mus musculus mRNA for mKIAA0895 protein Length = 1743 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 gacatcggcaagtttgtcaaggac 358 ||||| |||||||||||||||||| Sbjct: 1428 gacattggcaagtttgtcaaggac 1451
>gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342N3, complete sequence Length = 210913 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 gacatcggcaagtttgtcaaggac 358 ||||| |||||||||||||||||| Sbjct: 65621 gacattggcaagtttgtcaaggac 65598
>gb|AF399654.1|AF399654 Chlamydomonas reinhardtii ezy2 pseudogene, complete sequence Length = 5689 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tgcggctgctgctgctactc 113 |||||||||||||||||||| Sbjct: 3624 tgcggctgctgctgctactc 3605
>emb|BX296542.12| Zebrafish DNA sequence from clone CH211-278C10 in linkage group 9, complete sequence Length = 174884 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 gcggccgtgttttctctcag 522 |||||||||||||||||||| Sbjct: 96031 gcggccgtgttttctctcag 96050
>dbj|AK170604.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630110C03 product:unclassifiable, full insert sequence Length = 3882 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 gacatcggcaagtttgtcaaggac 358 ||||| |||||||||||||||||| Sbjct: 3097 gacattggcaagtttgtcaaggac 3120
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 ccggccgccatgtccggccg 381 |||||||||||||||||||| Sbjct: 4254553 ccggccgccatgtccggccg 4254534
>gb|AC119147.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0027A14, from chromosome 10, complete sequence Length = 175667 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 137 ttccccgcgcagggccatgtgatcccactcatggag 172 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 80655 ttcccggcgcagggccacgtcatcccgctcatggag 80620 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 137 ttccccgcgcagggccatgtgatcccactcatggag 172 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 1523 ttcccggcgcagggccacgtcatcccgctcatggag 1488
>emb|X76501.1|MLN43L M.leprae M43L gene Length = 1325 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 ggcactggagctggccaccacggc 468 |||||||| ||||||||||||||| Sbjct: 158 ggcactggcgctggccaccacggc 135
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 cgccggacacggcgtcgaggtcga 210 ||||| |||||||||||||||||| Sbjct: 2849260 cgccgaacacggcgtcgaggtcga 2849237
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 128 gtgctgcccttccccgcgcagggccatg 155 ||||||||| || ||||||||||||||| Sbjct: 4750554 gtgctgcccgtcgccgcgcagggccatg 4750527
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 128 gtgctgcccttccccgcgcagggccatg 155 ||||||||| || ||||||||||||||| Sbjct: 1125282 gtgctgcccgtcgccgcgcagggccatg 1125309
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cggcgtcgaggtcgacttcg 215 |||||||||||||||||||| Sbjct: 2431122 cggcgtcgaggtcgacttcg 2431103
>gb|AC146978.7| Mus musculus chromosome 7, clone RP24-217F6, complete sequence Length = 152682 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 tgttttctctcaggatgaac 529 |||||||||||||||||||| Sbjct: 8752 tgttttctctcaggatgaac 8771
>gb|AC167161.10| Mus musculus chromosome 7, clone RP23-367H8, complete sequence Length = 193612 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 tgttttctctcaggatgaac 529 |||||||||||||||||||| Sbjct: 171828 tgttttctctcaggatgaac 171847
>gb|L01095.1|MSGB38COS M. leprae genomic DNA sequence, cosmid B38 bfr gene, complete cds Length = 37114 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 ggcactggagctggccaccacggc 468 |||||||| ||||||||||||||| Sbjct: 35055 ggcactggcgctggccaccacggc 35078 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,178,190 Number of Sequences: 3902068 Number of extensions: 4178190 Number of successful extensions: 99373 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98647 Number of HSP's gapped (non-prelim): 721 length of query: 550 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 527 effective length of database: 17,143,297,704 effective search space: 9034517890008 effective search space used: 9034517890008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
