>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 2452

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 417  LHNPSPLCDVPALTTTARHISFSSAQDPGACLYNLNSLYYRP 542
            +++P+P+ D+ +      H  +S +  P +  YN N+ YY P
Sbjct: 2226 IYSPNPMLDIFSPKPQINHNIYSPSYSPTSPTYNANNAYYSP 2267

>EKI1_HUMAN (Q9HBU6) Ethanolamine kinase 1 (EC 2.7.1.82) (EKI 1)|
          Length = 452

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
 Frame = -2

Query: 418 STAARQKDAASPPVVHP------RPATAGMSSR*APWLSVVLSAVIL 296
           S A+R+  AA PPV  P      RP T G +S  AP + VV  AV++
Sbjct: 34  SAASRRSPAARPPVPAPPALPRGRPGTEGSTSLSAPAVLVVAVAVVV 80

>POLG_CXA24 (P36290) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2213

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 222 FARSSGVKVRIDCAIRAS---SPSREEVKITAERTTDSHGAYRLDIPAVAGLGCTTGGEA 392
           FAR+ G++  ID  I  +   S  + + ++TA+ T  + G    ++PA+  +     G+A
Sbjct: 575 FARAQGIEETIDTVISNALQLSQPKPQKQLTAQSTPSTSGVNSQEVPALTAVETGVSGQA 634

>SMG_DROME (Q23972) Protein Smaug|
          Length = 999

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 451 AGTSQSGEGLCSTAARQKDAASPPVVHPR---PATAGMSSR*APWLSVVLSAVILTSSLD 281
           AG S +G G CS++A     AS   V      PA+   SSR   W ++   +  L + L 
Sbjct: 299 AGGSSTGSGSCSSSATSSSTASCSSVASSSLCPASGSRSSRTNDWQTIAPPSKQLQNKLA 358

Query: 280 GE 275
           G+
Sbjct: 359 GD 360

>NUOF_MYCTU (P65567) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain F) (NDH-1, chain F)
          Length = 445

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +3

Query: 339 RLDIPAVAGL-GCTTGGEAASFCRAAVLHNPSPLCDVPALTTTARHI--SFSSAQDPGAC 509
           R   PAVAGL GC T           V++N   +  VP++         S  S + PG  
Sbjct: 203 RPPFPAVAGLYGCPT-----------VINNVETIASVPSIILGGIDWFRSMGSEKSPGFT 251

Query: 510 LYNLNSLYYRPGK 548
           LY+L+    RPG+
Sbjct: 252 LYSLSGHVTRPGQ 264

>NUOF_MYCBO (P65568) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain F) (NDH-1, chain F)
          Length = 445

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +3

Query: 339 RLDIPAVAGL-GCTTGGEAASFCRAAVLHNPSPLCDVPALTTTARHI--SFSSAQDPGAC 509
           R   PAVAGL GC T           V++N   +  VP++         S  S + PG  
Sbjct: 203 RPPFPAVAGLYGCPT-----------VINNVETIASVPSIILGGIDWFRSMGSEKSPGFT 251

Query: 510 LYNLNSLYYRPGK 548
           LY+L+    RPG+
Sbjct: 252 LYSLSGHVTRPGQ 264

>ABCX_PORPU (P51241) Probable ATP-dependent transporter ycf16|
          Length = 251

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 325 LSVVLSAVILTSSLDGELALIAQSILTFTPDERAKGG 215
           LS V++     S L+G++    +SIL   PDERA+ G
Sbjct: 47  LSKVIAGHPAYSLLNGDILFYGRSILKMEPDERARAG 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.123    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,644,936
Number of Sequences: 219361
Number of extensions: 660954
Number of successful extensions: 2753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2752
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)