Clone Name | bart24c11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 133 bits (67), Expect = 7e-28 Identities = 76/79 (96%) Strand = Plus / Minus Query: 137 aacctcacggtgaccggcaccgtgttctgcgacgcctgctcctccagctccttctccaac 196 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 17053620 aacctgacggtgaccggcacggtgttctgcgacgcctgctcctccagctccttctccaac 17053561 Query: 197 cacagctacttcctgccag 215 |||||||||||| |||||| Sbjct: 17053560 cacagctacttcttgccag 17053542 Score = 87.7 bits (44), Expect = 4e-14 Identities = 166/207 (80%), Gaps = 6/207 (2%) Strand = Plus / Minus Query: 280 cgtccagggaggaggtcaagatcacggccgagaggaccaccgacagccacggcgcctacc 339 |||||| ||||||| |||||||||| ||||||| | ||| ||| | |||||| |||| Sbjct: 17052432 cgtccaaggaggagatcaagatcaccgccgagaaggtgaccaacaccttcggcgcgtacc 17052373 Query: 340 ggctcgacatcccggcggtcgccggcctcgggtgcaccac------cggcggcgaggccg 393 |||||||||||||||| ||| |||| ||| |||| |||| || || || |||| Sbjct: 17052372 agctcgacatcccggcgatcgacggcttcgagtgcgccacctccgccgccgccgccgccg 17052313 Query: 394 cgtccttctgccgggccgccgtgctgcacaacccctcgccgctctgcgacgtgccggccc 453 ||||||||||| |||||||| | |||||||||||||||||||| |||||||||| Sbjct: 17052312 actccttctgccgcgccgccgtcatcgacaacccctcgccgctctgcaacgtgccggcgg 17052253 Query: 454 tgaccaccaccgcccgccacatctcct 480 | |||||||||| | |||||||||||| Sbjct: 17052252 tcaccaccaccgtcggccacatctcct 17052226 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 507 tgcctctacaacctcaactccctctactaccgccc 541 ||||||||||||||||||||||||||||||||||| Sbjct: 17052187 tgcctctacaacctcaactccctctactaccgccc 17052153 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 374 caccaccggcggcgaggccgcgtcct 399 |||||||||||||| ||||||||||| Sbjct: 17837510 caccaccggcggcgtggccgcgtcct 17837535
>dbj|AK063278.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C07, full insert sequence Length = 1495 Score = 133 bits (67), Expect = 7e-28 Identities = 76/79 (96%) Strand = Plus / Plus Query: 137 aacctcacggtgaccggcaccgtgttctgcgacgcctgctcctccagctccttctccaac 196 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 200 aacctgacggtgaccggcacggtgttctgcgacgcctgctcctccagctccttctccaac 259 Query: 197 cacagctacttcctgccag 215 |||||||||||| |||||| Sbjct: 260 cacagctacttcttgccag 278 Score = 87.7 bits (44), Expect = 4e-14 Identities = 166/207 (80%), Gaps = 6/207 (2%) Strand = Plus / Plus Query: 280 cgtccagggaggaggtcaagatcacggccgagaggaccaccgacagccacggcgcctacc 339 |||||| ||||||| |||||||||| ||||||| | ||| ||| | |||||| |||| Sbjct: 321 cgtccaaggaggagatcaagatcaccgccgagaaggtgaccaacaccttcggcgcgtacc 380 Query: 340 ggctcgacatcccggcggtcgccggcctcgggtgcaccac------cggcggcgaggccg 393 |||||||||||||||| ||| |||| ||| |||| |||| || || || |||| Sbjct: 381 agctcgacatcccggcgatcgacggcttcgagtgcgccacctccgccgccgccgccgccg 440 Query: 394 cgtccttctgccgggccgccgtgctgcacaacccctcgccgctctgcgacgtgccggccc 453 ||||||||||| |||||||| | |||||||||||||||||||| |||||||||| Sbjct: 441 actccttctgccgcgccgccgtcatcgacaacccctcgccgctctgcaacgtgccggcgg 500 Query: 454 tgaccaccaccgcccgccacatctcct 480 | |||||||||| | |||||||||||| Sbjct: 501 tcaccaccaccgtcggccacatctcct 527 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 507 tgcctctacaacctcaactccctctactaccgccc 541 ||||||||||||||||||||||||||||||||||| Sbjct: 566 tgcctctacaacctcaactccctctactaccgccc 600
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 133 bits (67), Expect = 7e-28 Identities = 76/79 (96%) Strand = Plus / Minus Query: 137 aacctcacggtgaccggcaccgtgttctgcgacgcctgctcctccagctccttctccaac 196 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 17006996 aacctgacggtgaccggcacggtgttctgcgacgcctgctcctccagctccttctccaac 17006937 Query: 197 cacagctacttcctgccag 215 |||||||||||| |||||| Sbjct: 17006936 cacagctacttcttgccag 17006918 Score = 87.7 bits (44), Expect = 4e-14 Identities = 166/207 (80%), Gaps = 6/207 (2%) Strand = Plus / Minus Query: 280 cgtccagggaggaggtcaagatcacggccgagaggaccaccgacagccacggcgcctacc 339 |||||| ||||||| |||||||||| ||||||| | ||| ||| | |||||| |||| Sbjct: 17005808 cgtccaaggaggagatcaagatcaccgccgagaaggtgaccaacaccttcggcgcgtacc 17005749 Query: 340 ggctcgacatcccggcggtcgccggcctcgggtgcaccac------cggcggcgaggccg 393 |||||||||||||||| ||| |||| ||| |||| |||| || || || |||| Sbjct: 17005748 agctcgacatcccggcgatcgacggcttcgagtgcgccacctccgccgccgccgccgccg 17005689 Query: 394 cgtccttctgccgggccgccgtgctgcacaacccctcgccgctctgcgacgtgccggccc 453 ||||||||||| |||||||| | |||||||||||||||||||| |||||||||| Sbjct: 17005688 actccttctgccgcgccgccgtcatcgacaacccctcgccgctctgcaacgtgccggcgg 17005629 Query: 454 tgaccaccaccgcccgccacatctcct 480 | |||||||||| | |||||||||||| Sbjct: 17005628 tcaccaccaccgtcggccacatctcct 17005602 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 507 tgcctctacaacctcaactccctctactaccgccc 541 ||||||||||||||||||||||||||||||||||| Sbjct: 17005563 tgcctctacaacctcaactccctctactaccgccc 17005529 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 374 caccaccggcggcgaggccgcgtcct 399 |||||||||||||| ||||||||||| Sbjct: 17763829 caccaccggcggcgtggccgcgtcct 17763854
>emb|AL713941.3|CNS07YP9 Oryza sativa chromosome 12, . BAC OSJNBa0006M08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136254 Score = 133 bits (67), Expect = 7e-28 Identities = 76/79 (96%) Strand = Plus / Plus Query: 137 aacctcacggtgaccggcaccgtgttctgcgacgcctgctcctccagctccttctccaac 196 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 95123 aacctgacggtgaccggcacggtgttctgcgacgcctgctcctccagctccttctccaac 95182 Query: 197 cacagctacttcctgccag 215 |||||||||||| |||||| Sbjct: 95183 cacagctacttcttgccag 95201 Score = 87.7 bits (44), Expect = 4e-14 Identities = 166/207 (80%), Gaps = 6/207 (2%) Strand = Plus / Plus Query: 280 cgtccagggaggaggtcaagatcacggccgagaggaccaccgacagccacggcgcctacc 339 |||||| ||||||| |||||||||| ||||||| | ||| ||| | |||||| |||| Sbjct: 96311 cgtccaaggaggagatcaagatcaccgccgagaaggtgaccaacaccttcggcgcgtacc 96370 Query: 340 ggctcgacatcccggcggtcgccggcctcgggtgcaccac------cggcggcgaggccg 393 |||||||||||||||| ||| |||| ||| |||| |||| || || || |||| Sbjct: 96371 agctcgacatcccggcgatcgacggcttcgagtgcgccacctccgccgccgccgccgccg 96430 Query: 394 cgtccttctgccgggccgccgtgctgcacaacccctcgccgctctgcgacgtgccggccc 453 ||||||||||| |||||||| | |||||||||||||||||||| |||||||||| Sbjct: 96431 actccttctgccgcgccgccgtcatcgacaacccctcgccgctctgcaacgtgccggcgg 96490 Query: 454 tgaccaccaccgcccgccacatctcct 480 | |||||||||| | |||||||||||| Sbjct: 96491 tcaccaccaccgtcggccacatctcct 96517 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 507 tgcctctacaacctcaactccctctactaccgccc 541 ||||||||||||||||||||||||||||||||||| Sbjct: 96556 tgcctctacaacctcaactccctctactaccgccc 96590
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 328 acggcgcctaccggctcgacatcc 351 |||||||||||||||||||||||| Sbjct: 1917980 acggcgcctaccggctcgacatcc 1917957
>gb|AC137606.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0004B23, complete sequence Length = 153136 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 464 cgcccgccacatctccttctcgtcggc 490 ||||||||||||||||| ||||||||| Sbjct: 81575 cgcccgccacatctcctcctcgtcggc 81601
>gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0680F01, complete sequence Length = 156691 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 464 cgcccgccacatctccttctcgtcggc 490 ||||||||||||||||| ||||||||| Sbjct: 4426 cgcccgccacatctcctcctcgtcggc 4452
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 464 cgcccgccacatctccttctcgtcggc 490 ||||||||||||||||| ||||||||| Sbjct: 8596003 cgcccgccacatctcctcctcgtcggc 8596029
>dbj|AK061317.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-D09, full insert sequence Length = 1076 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 464 cgcccgccacatctccttctcgtcggc 490 ||||||||||||||||| ||||||||| Sbjct: 96 cgcccgccacatctcctcctcgtcggc 70
>emb|AL626768.21| Mouse DNA sequence from clone RP23-347B4 on chromosome 4, complete sequence Length = 227165 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttctcc 193 ||||||||||||||||||||||| Sbjct: 153614 cctgctcctccagctccttctcc 153592
>ref|NM_125937.2| Arabidopsis thaliana AGP7 AT5G65390 (AGP7) mRNA, complete cds Length = 755 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 178 ctccagctccttctccaaccac 199 |||||||||||||||||||||| Sbjct: 131 ctccagctccttctccaaccac 152
>ref|XM_359815.1| Magnaporthe grisea 70-15 hypothetical protein (MG04962.4) partial mRNA Length = 1917 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 267 agggcgagctcgccgtccaggg 288 |||||||||||||||||||||| Sbjct: 35 agggcgagctcgccgtccaggg 56
>gb|AC166997.1| Mus musculus BAC clone RP23-107H9 from chromosome 14, complete sequence Length = 201316 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 172 ctgctcctccagctccttctcc 193 |||||||||||||||||||||| Sbjct: 183389 ctgctcctccagctccttctcc 183368
>gb|AY094049.1| Arabidopsis thaliana AT5g65390/MNA5_12 mRNA, complete cds Length = 393 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 178 ctccagctccttctccaaccac 199 |||||||||||||||||||||| Sbjct: 68 ctccagctccttctccaaccac 89
>gb|AY050361.1| Arabidopsis thaliana AT5g65390/MNA5_12 mRNA, complete cds Length = 666 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 178 ctccagctccttctccaaccac 199 |||||||||||||||||||||| Sbjct: 132 ctccagctccttctccaaccac 153
>emb|BX833302.1|CNS0A0LS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL43ZE11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 640 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 178 ctccagctccttctccaaccac 199 |||||||||||||||||||||| Sbjct: 103 ctccagctccttctccaaccac 124
>emb|BX833104.1|CNS0A0I2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL34ZD06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 646 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 178 ctccagctccttctccaaccac 199 |||||||||||||||||||||| Sbjct: 115 ctccagctccttctccaaccac 136
>gb|AY084455.1| Arabidopsis thaliana clone 108595 mRNA, complete sequence Length = 699 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 178 ctccagctccttctccaaccac 199 |||||||||||||||||||||| Sbjct: 74 ctccagctccttctccaaccac 95
>dbj|AB011479.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5 Length = 88356 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 178 ctccagctccttctccaaccac 199 |||||||||||||||||||||| Sbjct: 41107 ctccagctccttctccaaccac 41086
>gb|AC161764.4| Mus musculus BAC clone RP23-193D1 from chromosome 14, complete sequence Length = 215230 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 172 ctgctcctccagctccttctcc 193 |||||||||||||||||||||| Sbjct: 32375 ctgctcctccagctccttctcc 32354
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142246 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 374 caccaccggcggcgaggccgcgtcct 399 |||||||||||||| ||||||||||| Sbjct: 56708 caccaccggcggcgtggccgcgtcct 56733
>ref|XM_477464.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 gcaccaccggcggcgaggccg 393 ||||||||||||||||||||| Sbjct: 922 gcaccaccggcggcgaggccg 902
>gb|BC056813.1| Danio rerio transcription elongation regulator 1 (CA150), mRNA (cDNA clone MGC:63740 IMAGE:2639923), complete cds Length = 3833 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 169 cgcctgctcctccagctccttctcc 193 |||||||| |||||||||||||||| Sbjct: 2320 cgcctgcttctccagctccttctcc 2296
>gb|AC156253.2| Xenopus tropicalis clone ISB1-36I3, complete sequence Length = 61248 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 cacatctccttctcgtcggcc 491 ||||||||||||||||||||| Sbjct: 48233 cacatctccttctcgtcggcc 48253
>emb|AL513477.21| Human DNA sequence from clone RP4-740C4 on chromosome 1 Contains the 3' end of a novel gene (FLJ13941), the gene for RER1 homolog (S. cerevisiae), the PEX10 gene for peroxisome biogenesis factor 10 an novel gene and two CpG islands, complete sequence Length = 106323 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 170 gcctgctcctccagctccttctcca 194 ||||||||||||||| ||||||||| Sbjct: 65467 gcctgctcctccagcgccttctcca 65491
>ref|XM_500901.1| Yarrowia lipolytica CLIB122, YALI0B14817g predicted mRNA Length = 2745 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 ctgctcctccagctccttctc 192 ||||||||||||||||||||| Sbjct: 1728 ctgctcctccagctccttctc 1708
>emb|AJ862840.1| Streptomyces griseus subsp. griseus streptomycin gene cluster, strain DSM 40236 Length = 90600 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 ggaggtcaagatcacggccga 310 ||||||||||||||||||||| Sbjct: 66095 ggaggtcaagatcacggccga 66115
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 440 cgacgtgccggccctgaccaccacc 464 ||||||| ||||||||||||||||| Sbjct: 4183398 cgacgtggcggccctgaccaccacc 4183422 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 440 cgacgtgccggccctgaccaccacc 464 ||||||| ||||||||||||||||| Sbjct: 4182822 cgacgtggcggccctgaccaccacc 4182846 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 440 cgacgtgccggccctgaccaccacc 464 ||||||| ||||||||||||||||| Sbjct: 4182246 cgacgtggcggccctgaccaccacc 4182270 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 440 cgacgtgccggccctgaccaccacc 464 ||||||| ||||||||||||||||| Sbjct: 4181670 cgacgtggcggccctgaccaccacc 4181694
>ref|XM_696925.1| PREDICTED: Danio rerio hypothetical protein LOC554766 (LOC554766), mRNA Length = 3807 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 169 cgcctgctcctccagctccttctcc 193 |||||||| |||||||||||||||| Sbjct: 2310 cgcctgcttctccagctccttctcc 2286
>emb|CR407579.1| Gallus gallus finished cDNA, clone ChEST592n10 Length = 1032 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 gctcctccagctccttctcca 194 ||||||||||||||||||||| Sbjct: 552 gctcctccagctccttctcca 532
>emb|CR406061.1| Gallus gallus finished cDNA, clone ChEST461i8 Length = 988 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 gctcctccagctccttctcca 194 ||||||||||||||||||||| Sbjct: 508 gctcctccagctccttctcca 488
>emb|BX931738.2| Gallus gallus finished cDNA, clone ChEST747n11 Length = 1011 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 gctcctccagctccttctcca 194 ||||||||||||||||||||| Sbjct: 529 gctcctccagctccttctcca 509
>emb|BX931504.2| Gallus gallus finished cDNA, clone ChEST395b5 Length = 1165 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 gctcctccagctccttctcca 194 ||||||||||||||||||||| Sbjct: 687 gctcctccagctccttctcca 667
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 gcaccaccggcggcgaggccg 393 ||||||||||||||||||||| Sbjct: 10669540 gcaccaccggcggcgaggccg 10669520
>dbj|AB159773.1| Burkholderia multivorans insertion sequence ISBmu1 DNA, complete sequence Length = 2581 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 325 gccacggcgcctaccggctcg 345 ||||||||||||||||||||| Sbjct: 2384 gccacggcgcctaccggctcg 2404
>ref|NM_198357.1| Danio rerio transcription elongation regulator 1 (CA150) (tcerg1), mRNA Length = 3833 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 169 cgcctgctcctccagctccttctcc 193 |||||||| |||||||||||||||| Sbjct: 2320 cgcctgcttctccagctccttctcc 2296
>dbj|AP005189.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0474B11 Length = 141702 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 gcaccaccggcggcgaggccg 393 ||||||||||||||||||||| Sbjct: 112204 gcaccaccggcggcgaggccg 112184
>dbj|AK108656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E06, full insert sequence Length = 1740 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 gcaccaccggcggcgaggccg 393 ||||||||||||||||||||| Sbjct: 939 gcaccaccggcggcgaggccg 919
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 gctccttctccaaccacagct 203 ||||||||||||||||||||| Sbjct: 884996 gctccttctccaaccacagct 885016
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 ctgctcctccagctccttctc 192 ||||||||||||||||||||| Sbjct: 1969228 ctgctcctccagctccttctc 1969248
>ref|NM_190275.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1794 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 ccgccacatctccttctcgtcggc 490 |||||||||||||| ||||||||| Sbjct: 108 ccgccacatctcctcctcgtcggc 85
>ref|NM_015158.2| Homo sapiens ankyrin repeat domain 15 (ANKRD15), transcript variant 1, mRNA Length = 5083 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 976 cctgctcctccagctccttc 957
>ref|NM_153186.3| Homo sapiens ankyrin repeat domain 15 (ANKRD15), transcript variant 2, mRNA Length = 5263 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 1156 cctgctcctccagctccttc 1137
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cacggtgaccggcaccgtgt 161 |||||||||||||||||||| Sbjct: 5344071 cacggtgaccggcaccgtgt 5344052
>ref|XM_419179.1| PREDICTED: Gallus gallus similar to TRS85 homolog (LOC421095), mRNA Length = 4359 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 2275 cctgctcctccagctccttc 2256
>ref|XM_960583.1| Neurospora crassa OR74A hypothetical protein (NCU02545.1) partial mRNA Length = 951 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 tgctcctccagctccttctc 192 |||||||||||||||||||| Sbjct: 734 tgctcctccagctccttctc 715
>ref|XM_324276.1| Neurospora crassa OR74A predicted protein (NCU04920.1) partial mRNA Length = 2301 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ctcctccagctccttctcca 194 |||||||||||||||||||| Sbjct: 2292 ctcctccagctccttctcca 2273
>ref|XM_954275.1| Neurospora crassa OR74A hypothetical protein (NCU04920.1) partial mRNA Length = 2301 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ctcctccagctccttctcca 194 |||||||||||||||||||| Sbjct: 2292 ctcctccagctccttctcca 2273
>gb|BC037495.2| Homo sapiens ankyrin repeat domain 15, mRNA (cDNA clone MGC:43307 IMAGE:5265517), complete cds Length = 5594 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 1493 cctgctcctccagctccttc 1474
>ref|XM_331743.1| Neurospora crassa OR74A hypothetical protein (NCU02545.1) partial mRNA Length = 951 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 tgctcctccagctccttctc 192 |||||||||||||||||||| Sbjct: 734 tgctcctccagctccttctc 715
>gb|AC166566.2| Spironucleus vortens clone JGIBAWF-9N13, complete sequence Length = 39842 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 accggcaccgtgttctgcgacgcc 172 ||||||||||||||| |||||||| Sbjct: 7889 accggcaccgtgttcagcgacgcc 7866 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 accggcaccgtgttctgcgacgcc 172 ||||||||||||||| |||||||| Sbjct: 7235 accggcaccgtgttcagcgacgcc 7212
>gb|AC183983.2| Pan troglodytes BAC clone CH251-515C21 from chromosome 9, complete sequence Length = 154108 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 68011 cctgctcctccagctccttc 68030
>ref|XM_501489.1| Yarrowia lipolytica CLIB122, YALI0C05797g predicted mRNA Length = 1419 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttctcca 194 |||||||||||||||||| ||||| Sbjct: 220 cctgctcctccagctcctcctcca 197
>ref|XM_504789.1| Yarrowia lipolytica CLIB122, YALI0E34837g predicted mRNA Length = 957 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttctcca 194 |||||||||||||||||| ||||| Sbjct: 559 cctgctcctccagctcctcctcca 536
>emb|AL136979.16| Human DNA sequence from clone RP11-130C19 on chromosome 9p24.1-24.3 Contains a translation initiation factor (SUI1) pseudogene, a novel gene and the gene for kidney ankyrin repeat-containing protein (KANK, KIAA0172), complete sequence Length = 197099 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 86460 cctgctcctccagctccttc 86441
>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7 Length = 349652 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 accggcaccgtgttctgcgacgcc 172 |||| ||||||||||||||||||| Sbjct: 181986 accgacaccgtgttctgcgacgcc 181963
>emb|CR858166.1| Pongo pygmaeus mRNA; cDNA DKFZp469D1011 (from clone DKFZp469D1011) Length = 5139 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 1085 cctgctcctccagctccttc 1066
>emb|CR857547.1| Pongo pygmaeus mRNA; cDNA DKFZp469I2228 (from clone DKFZp469I2228) Length = 3535 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 1072 cctgctcctccagctccttc 1053
>gb|AC091207.3| Drosophila melanogaster 3L BAC RP98-12P14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160504 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttctccaacca 198 |||||||||||||| ||||| ||||||| Sbjct: 127625 cctgctcctccagcaccttcaccaacca 127598
>gb|AC091201.4| Drosophila melanogaster 3L BAC RP98-47H5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187000 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttctccaacca 198 |||||||||||||| ||||| ||||||| Sbjct: 27830 cctgctcctccagcaccttcaccaacca 27803
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tgccggccctgaccaccacc 464 |||||||||||||||||||| Sbjct: 457011 tgccggccctgaccaccacc 456992
>ref|NM_168116.1| Drosophila melanogaster lamina ancestor CG10645-RC, transcript variant C (lama), mRNA Length = 3048 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 cctgctcctccagctccttctccaacca 198 |||||||||||||| ||||| ||||||| Sbjct: 483 cctgctcctccagcaccttcaccaacca 510
>ref|NM_168115.1| Drosophila melanogaster lamina ancestor CG10645-RA, transcript variant A (lama), mRNA Length = 2977 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 cctgctcctccagctccttctccaacca 198 |||||||||||||| ||||| ||||||| Sbjct: 414 cctgctcctccagcaccttcaccaacca 441
>ref|NM_079209.2| Drosophila melanogaster lamina ancestor CG10645-RB, transcript variant B (lama), mRNA Length = 3491 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 cctgctcctccagctccttctccaacca 198 |||||||||||||| ||||| ||||||| Sbjct: 928 cctgctcctccagcaccttcaccaacca 955
>ref|XM_695917.1| PREDICTED: Danio rerio similar to chromosome 20 open reading frame 23 (LOC572223), partial mRNA Length = 1341 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ctcctccagctccttctcca 194 |||||||||||||||||||| Sbjct: 270 ctcctccagctccttctcca 251
>emb|CR386726.1| Gallus gallus finished cDNA, clone ChEST31m6 Length = 848 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 458 cctgctcctccagctccttc 439
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 ccgccacatctccttctcgtcggc 490 |||||||||||||| ||||||||| Sbjct: 38994032 ccgccacatctcctcctcgtcggc 38994009
>dbj|D79994.2| Homo sapiens KIAA0172 mRNA, complete cds Length = 5635 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 1549 cctgctcctccagctccttc 1530
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 ccgccacatctccttctcgtcggc 490 |||||||||||||| ||||||||| Sbjct: 67665 ccgccacatctcctcctcgtcggc 67642
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 ccgccacatctccttctcgtcggc 490 |||||||||||||| ||||||||| Sbjct: 12012 ccgccacatctcctcctcgtcggc 11989
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 390 gccgcgtccttctgccgggccgcc 413 |||||||||| ||||||||||||| Sbjct: 3000130 gccgcgtcctgctgccgggccgcc 3000153
>emb|BX648931.1|HSM809082 Homo sapiens mRNA; cDNA DKFZp686G183 (from clone DKFZp686G183) Length = 7217 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 978 cctgctcctccagctccttc 959
>dbj|AK026421.1| Homo sapiens cDNA: FLJ22768 fis, clone KAIA1306 Length = 3049 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 597 cctgctcctccagctccttc 578
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 acctcaactccctctactac 536 |||||||||||||||||||| Sbjct: 5709612 acctcaactccctctactac 5709631
>gb|AE003566.3| Drosophila melanogaster chromosome 3L, section 19 of 83 of the complete sequence Length = 251457 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttctccaacca 198 |||||||||||||| ||||| ||||||| Sbjct: 68320 cctgctcctccagcaccttcaccaacca 68293
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 acctcaactccctctactac 536 |||||||||||||||||||| Sbjct: 5990893 acctcaactccctctactac 5990912
>gb|BT001475.1| Drosophila melanogaster LD13253 full insert cDNA Length = 3544 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 cctgctcctccagctccttctccaacca 198 |||||||||||||| ||||| ||||||| Sbjct: 962 cctgctcctccagcaccttcaccaacca 989
>emb|AL832454.2|HSM803762 Homo sapiens mRNA; cDNA DKFZp451G231 (from clone DKFZp451G231) Length = 6912 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 976 cctgctcctccagctccttc 957
>emb|AL833161.1|HSM804472 Homo sapiens mRNA; cDNA DKFZp686K0111 (from clone DKFZp686K0111) Length = 5071 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 964 cctgctcctccagctccttc 945
>gb|BC038116.2| Homo sapiens ankyrin repeat domain 15, transcript variant 2, mRNA (cDNA clone MGC:43128 IMAGE:5261060), complete cds Length = 5303 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cctgctcctccagctccttc 190 |||||||||||||||||||| Sbjct: 1156 cctgctcctccagctccttc 1137
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 cctgctcctccagctccttctcca 194 |||||||||||||||||| ||||| Sbjct: 4154931 cctgctcctccagctcctcctcca 4154954
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 cctgctcctccagctccttctcca 194 |||||||||||||||||| ||||| Sbjct: 748465 cctgctcctccagctcctcctcca 748488
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ggaggaggtcaagatcacgg 306 |||||||||||||||||||| Sbjct: 123616 ggaggaggtcaagatcacgg 123635
>emb|AL662931.10| Mouse DNA sequence from clone RP23-24M17 on chromosome X, complete sequence Length = 175639 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 acgcctgctcctccagctcc 187 |||||||||||||||||||| Sbjct: 81993 acgcctgctcctccagctcc 81974 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,072,169 Number of Sequences: 3902068 Number of extensions: 4072169 Number of successful extensions: 106069 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104552 Number of HSP's gapped (non-prelim): 1517 length of query: 554 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 531 effective length of database: 17,143,297,704 effective search space: 9103091080824 effective search space used: 9103091080824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)