>U131_ARATH (Q9M8T3) Hypothetical UPF0131 protein At3g02910|
          Length = 182

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 66/181 (36%), Positives = 88/181 (48%), Gaps = 16/181 (8%)
 Frame = +3

Query: 39  SAATMVFVYGTLKRGFPNH----PRLAAFNCPFXXXXXXXXXXSLVIGPYSVPFLLPTPT 206
           +  T+VF YGTLKRGF NH      + + +  F           LV GPY VPFLL  P 
Sbjct: 4   ATTTLVFTYGTLKRGFSNHVLMQDLIRSGDASFKGVYQTLDKYPLVCGPYRVPFLLNKP- 62

Query: 207 PSSGRLVSGELYSASPSAVADLDLLEGTHLGVYERRRITVVVNGATKEVE---------- 356
             SG  V+GELY+ SP  ++ LD LEG   G Y R+ I +      +E E          
Sbjct: 63  -GSGYHVNGELYAVSPRGLSRLDELEGISRGHYIRQPIRLAAAEEEEEEEGDLETEAPSS 121

Query: 357 --AEAYFANASYAEALWLRCGGEAAEIAEYTMEHAGRYVPPSGRSPGVSGLMDAVRGFLA 530
              EAY+A+ SY E LW R  G +     YT   A  YV  + R   +S  +D +R F++
Sbjct: 122 CVVEAYYAHKSYEEELWRRNRGRS--FGAYTENEARGYVKRNDRPQHLS-FLDHIRIFVS 178

Query: 531 T 533
           +
Sbjct: 179 S 179

>YS11_DROME (Q9W0Y2) Hypothetical UPF0131 protein CG2811|
          Length = 157

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
 Frame = +3

Query: 45  ATMVFVYGTLKRGFPNHPRLAA---FNCPFXXXXXXXXXXSLVIGP-YSVPFLLPTPTPS 212
           A  VFVYGTLKRG PNH  L         F           LV+G  Y++PFLL    P 
Sbjct: 8   AARVFVYGTLKRGEPNHHWLTKKENGQARFLGRGKTETKFPLVVGTRYNIPFLL--ARPG 65

Query: 213 SGRLVSGELYSASPSAVADLDLLEGTHLGVYERRRITVVV 332
            G  + GE+Y    + ++ LD+LE  +   Y+R + T+++
Sbjct: 66  EGNHIEGEVYEVDETMLSKLDILE-DYPDYYDREQQTILM 104

>Y1514_METJA (Q58909) Hypothetical UPF0131 protein MJ1514|
          Length = 120

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
 Frame = +3

Query: 54  VFVYGTLKRGFPNH-PRLAAFNCPFXXXXXXXXXXSLVIGPYSVPFLLPTPTPSSGRLVS 230
           VFVYG+L++GF NH P L   N  F          ++ +    +P+++     S    + 
Sbjct: 4   VFVYGSLRKGFWNHEPYLK--NSKFIGKGKTKEKYAMYVN--IIPYVVENEKISH---IV 56

Query: 231 GELYSASPSAVADLDLLEGTHLGVYERRRITVVVNGATKEVEAEAYF 371
           GE+Y      +  +D LEG H   Y R++++++++   KE+EA  YF
Sbjct: 57  GEVYEVDEKTLKRIDCLEG-HPDYYRRKKVSIILDSG-KEIEAWLYF 101

>Y3309_BURMA (Q62EU9) UPF0271 protein BMA3309|
          Length = 254

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = -2

Query: 521 ATDGIHEPGDAGRAATGRDVPARVLH-GVLRDLGRLAAAAQPQGLRVARVREVSLCLHLF 345
           A    H+P + GR     D+PA  ++ GVL  LG L+A AQ +G R+A V+      +  
Sbjct: 56  AHPSFHDPENFGRKEM--DLPASEIYAGVLYQLGALSAIAQAEGGRIAHVKPHGALYNQA 113

Query: 344 SRPVNHDGDPPALVDAEVSAL 282
           +R        P + DA VSA+
Sbjct: 114 AR-------EPEIADAVVSAI 127

>Y257_BURPS (Q63YD1) UPF0271 protein BPSL0257|
          Length = 254

 Score = 36.2 bits (82), Expect = 0.074
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = -2

Query: 521 ATDGIHEPGDAGRAATGRDVPARVLH-GVLRDLGRLAAAAQPQGLRVARVREVSLCLHLF 345
           A    H+P + GR     D+PA  ++ GVL  LG L+A AQ +G R+A V+      +  
Sbjct: 56  AHPSFHDPENFGRKEM--DLPASEIYAGVLYQLGALSAFAQAEGGRIAHVKPHGALYNQA 113

Query: 344 SRPVNHDGDPPALVDAEVSAL 282
           +R        P + DA VSA+
Sbjct: 114 AR-------EPEIADAVVSAI 127

>SYFB_STRPN (Q97S34) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 801

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 237 LYSASPSAVADLDLLEGTHLGVYERR--RITVVVNGATKEV-EAEAYFANASYAEALWLR 407
           LY   P    DLD  EGT + V E R     V ++G  +++ E +     A    AL   
Sbjct: 263 LYFGQPMHAFDLDTFEGTDIRVREARDGEKLVTLDGEERDLAETDLVITVADKPVALAGV 322

Query: 408 CGGEAAEIAE 437
            GG+A EI+E
Sbjct: 323 MGGQATEISE 332

>RF3_NEIMA (Q9JVH7) Peptide chain release factor 3 (RF-3)|
          Length = 531

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +3

Query: 294 LGVYERRRITVVVNGATKEVEAEAYFANASYAEALWLRCGGEAAEIAEYTMEHAGRYVPP 473
           LG     +  VV +    E   EA F NAS   A W+ C  +  ++AE+   +AG     
Sbjct: 436 LGAVGVLQFEVVTSRLANEYGVEAVFDNASIWSARWVSC-DDKKKLAEFEKANAGNLAID 494

Query: 474 SG 479
           +G
Sbjct: 495 AG 496

>CSPG4_HUMAN (Q6UVK1) Chondroitin sulfate proteoglycan 4 precursor (Chondroitin|
            sulfate proteoglycan NG2) (Melanoma chondroitin sulfate
            proteoglycan) (Melanoma-associated chondroitin sulfate
            proteoglycan)
          Length = 2322

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 414  GEAAEIAEYTMEHAGRYVPP-----SGRSPGVSGLMDAV-RGFLATAPPA 545
            GEAAEI    +E A   VPP     S +SP  +G +  V RG LA  PP+
Sbjct: 1252 GEAAEIRRDQLEAAQEAVPPADIVFSVKSPPSAGYLVMVSRGALADEPPS 1301

>PSB2_NEUCR (Q9P6U7) Probable proteasome subunit beta type 2 (EC 3.4.25.1)|
          Length = 203

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 414 GEAAEIAEYTMEHAGRYVPPSGRSPGVSGLMDAVRGFLATA 536
           G+  + AEYT  +A  Y   +G     S L + VRG LAT+
Sbjct: 51  GDTVQFAEYTQANAQLYSMRNGTDLSPSALANFVRGELATS 91

>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal
            proliferator-activated receptor A-interacting complex 320
            kDa protein) (PPAR-alpha-interacting complex protein 320
            kDa)
          Length = 2885

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 526  RKPRTASMSPETPGERPLGGTYLPACSMVYSAISAASP 413
            +K RT S SPE  GER + G+   + +   S+ +AA P
Sbjct: 2742 KKERTESQSPENGGERCVPGSPSTSSTAALSSAAAAKP 2779

>SYFB_STRR6 (Q8DQT6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 800

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 237 LYSASPSAVADLDLLEGTHLGVYERR--RITVVVNGATKEVEA-EAYFANASYAEALWLR 407
           LY   P    DLD  EGT + V E R     V ++G  ++++  +     A    AL   
Sbjct: 262 LYFGQPMHAFDLDNFEGTDIRVREARAGEKLVTLDGEERDLDVNDLVITVADKPVALAGV 321

Query: 408 CGGEAAEIAE 437
            GG+A EI+E
Sbjct: 322 MGGQATEISE 331


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,705,712
Number of Sequences: 219361
Number of extensions: 1191695
Number of successful extensions: 4672
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4665
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)