ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart24c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GGLO_SCYTO (Q90YK3) L-gulonolactone oxidase (EC 1.1.3.8) (LGO) (... 31 2.0
2YCJR_ECOLI (P76044) Hypothetical protein ycjR 29 7.8

>GGLO_SCYTO (Q90YK3) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)|
           (L-gulono-gamma-lactone oxidase) (GLO)
          Length = 440

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 351 HSFTKLACPGGRDGTIISTERLNKTVSVDAAKGLMTVESGMVLKDL 488
           HS + +AC    D  ++   +LN+ + VD  +  +T E+G++L DL
Sbjct: 54  HSPSDIACT---DNYLVRLNKLNRILQVDKERKWITAEAGILLSDL 96



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>YCJR_ECOLI (P76044) Hypothetical protein ycjR|
          Length = 265

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 476 HHAALHRHQP-LGSIDAHRLVEPLRADD 396
           H A  HR+QP  G++D H L E LRAD+
Sbjct: 208 HIADNHRYQPGSGTLDFHALFEQLRADN 235


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,792,046
Number of Sequences: 219361
Number of extensions: 933475
Number of successful extensions: 3216
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3214
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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