ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart24b11 |
|---|---|
| Clone Library Name | barley_pub |
>BSPA_POPDE (Q07469) Bark storage protein A precursor| Length = 312 Score = 78.2 bits (191), Expect = 2e-14 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Frame = +1 Query: 205 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 384 +GLV + + +S + ++DI GRRF GT+ G S+V V TG +N Sbjct: 29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSPSVNMAT 88 Query: 385 TTQMLLSLFRVKGIVHWGIAGNASEDLQI-GDVTIPEYWAHVSLWNWQRFGDGK 543 T Q+LL F + G++++G AG+ + + GDV++P+ A +WNW++FG K Sbjct: 89 TLQILLVRFNIHGVIYFGNAGSLDKKTMVPGDVSVPQAVAFTGVWNWKKFGSEK 142
>BSPB_POPDE (Q09117) Bark storage protein B precursor| Length = 312 Score = 70.9 bits (172), Expect = 3e-12 Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 1/114 (0%) Frame = +1 Query: 205 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 384 +GLV + + +S + ++DI GRRF GT+ G S+V V TG +N Sbjct: 29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSHSVNMAT 88 Query: 385 TTQMLLSLFRVKGIVHWGIAGNASEDLQI-GDVTIPEYWAHVSLWNWQRFGDGK 543 T Q+LL+ F + G++++G AG+ + + GDV++P+ A + NW++F K Sbjct: 89 TLQILLARFSIHGVIYFGNAGSLDKKTMVPGDVSVPQAVAFTGVCNWKKFRSEK 142
>Y2293_MYCTU (Q50673) Hypothetical protein Rv2293c/MT2350 precursor| Length = 246 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Frame = +1 Query: 304 RRFRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLF------RVKGIVHWGIAGNASEDL 465 RR+ G+I G+ V++ MTG+ ++NA TT+ + F + ++ G+AG A Sbjct: 69 RRYYLGSISGKKVIVAMTGIGLVNATNTTETAFARFTCASSIAIAAVMFSGVAGGAGR-T 127 Query: 466 QIGDVTIPEYW 498 IGDV IP W Sbjct: 128 SIGDVAIPARW 138
>MTNN_MYCTU (P67656) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 255 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = +1 Query: 310 FRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNASEDLQIGDVTIP 489 F G ++ VV+ G+ +N GLT +L F + IV G+AG +L IGD+ I Sbjct: 35 FDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIA 94 Query: 490 E 492 + Sbjct: 95 D 95
>MTNN_MYCBO (P67657) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 255 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = +1 Query: 310 FRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNASEDLQIGDVTIP 489 F G ++ VV+ G+ +N GLT +L F + IV G+AG +L IGD+ I Sbjct: 35 FDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIA 94 Query: 490 E 492 + Sbjct: 95 D 95
>MTNN_BUCAP (O51931) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 235 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/96 (25%), Positives = 54/96 (56%) Frame = +1 Query: 205 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 384 +G++ E+ + E + + K I N+ I GT + + ++++G+ ++A + Sbjct: 3 IGIIGAIEQEIRKIKEIINNLKIKKIGNIKIYT-----GTFKKIEIFLILSGIGKVSASM 57 Query: 385 TTQMLLSLFRVKGIVHWGIAGNASEDLQIGDVTIPE 492 +T + ++LF+ I++ G AG+ + L+IGD+ IP+ Sbjct: 58 STTISINLFQPDFIINSGSAGSLNACLKIGDIIIPK 93
>MTNN_BUCAI (P57306) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 41.2 bits (95), Expect = 0.002 Identities = 17/58 (29%), Positives = 35/58 (60%) Frame = +1 Query: 319 GTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNASEDLQIGDVTIPE 492 G + V ++ +G+ ++A + T +L+ L++ I++ G AG+ L+IGD+ IP+ Sbjct: 36 GKFKSHDVFLIKSGIGKVSASVATMILIDLYKPDTIINSGSAGSLQSFLKIGDIIIPK 93
>MTNN_HELPY (O24915) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 231 Score = 39.3 bits (90), Expect = 0.009 Identities = 20/94 (21%), Positives = 48/94 (51%) Frame = +1 Query: 205 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 384 +G++ E+ P+LE + + + G F G + +++ + + +++ L Sbjct: 5 IGILGAMREEITPILE----LFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTL 60 Query: 385 TTQMLLSLFRVKGIVHWGIAGNASEDLQIGDVTI 486 TT ++ F V+ ++ G+AG+ +DL+I D+ + Sbjct: 61 TTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLV 94
>MTNN_TREPA (P96122) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 269 Score = 39.3 bits (90), Expect = 0.009 Identities = 22/62 (35%), Positives = 34/62 (54%) Frame = +1 Query: 301 GRRFRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNASEDLQIGDV 480 G F ++ VV V G+ +NA L TQ+L+S F + +++ GIAG E L + DV Sbjct: 29 GLTFYVVSVGALQVVYVCGGVGKVNAALCTQLLISEFGARVLINTGIAGALDERLCVFDV 88 Query: 481 TI 486 + Sbjct: 89 LV 90
>MTNN_HELPJ (Q9ZMY2) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 230 Score = 39.3 bits (90), Expect = 0.009 Identities = 20/94 (21%), Positives = 48/94 (51%) Frame = +1 Query: 205 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 384 +G++ E+ P+LE + + + G F G + +++ + + +++ L Sbjct: 4 IGILGAMREEITPILE----LFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTL 59 Query: 385 TTQMLLSLFRVKGIVHWGIAGNASEDLQIGDVTI 486 TT ++ F V+ ++ G+AG+ +DL+I D+ + Sbjct: 60 TTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLV 93
>DEOD_LACLC (O32810) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)| (PNP) Length = 234 Score = 36.6 bits (83), Expect = 0.059 Identities = 19/64 (29%), Positives = 36/64 (56%) Frame = +1 Query: 319 GTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNASEDLQIGDVTIPEYW 498 GT +G V ++ TG+ + + + L++ + VK ++ G AG+ +ED+ I D+ I + Sbjct: 51 GTYKGHRVSVMGTGMGIPSISIYANELITEYGVKRLIRVGTAGSVNEDVHIRDLVIGQAA 110 Query: 499 AHVS 510 A S Sbjct: 111 ATTS 114
>DEOD_LACLA (Q9CH10) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)| (PNP) Length = 234 Score = 36.6 bits (83), Expect = 0.059 Identities = 19/64 (29%), Positives = 36/64 (56%) Frame = +1 Query: 319 GTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNASEDLQIGDVTIPEYW 498 GT +G V ++ TG+ + + + L++ + VK ++ G AG+ +ED+ I D+ I + Sbjct: 51 GTYKGHRVSVMGTGMGIPSISIYANELITEYGVKRLIRVGTAGSVNEDVHIRDLVIGQAA 110 Query: 499 AHVS 510 A S Sbjct: 111 ATTS 114
>ASSY_STRMU (Q8CWZ0) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 396 Score = 33.9 bits (76), Expect = 0.38 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Frame = -3 Query: 414 PEQAQQHLGGQTSVEHAQSCHDHDDA-------LAFDGSKAKPSPLDVHVRDALAG-HEA 259 PE+A G SVE A ++ D +A DG + K + L + + LAG H Sbjct: 196 PEEA---FGITNSVEEAPDKAEYVDITFKEGKPVALDGQEMKLADL-IQKLNVLAGKHGV 251 Query: 258 GRLEH-RNHLVGVGHDEADERPGAV 187 GR++H N LVG+ E E PGAV Sbjct: 252 GRIDHVENRLVGIKSREIYECPGAV 276
>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining| factor) Length = 311 Score = 33.1 bits (74), Expect = 0.66 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 270 QQEHP*HGHPRAKVSLWNHRRPKRRHGHDRTEHAQRWSDHP 392 QQ+ H H + + L NH +++ HD + Q++ DHP Sbjct: 200 QQQQQFHDHQQQQQQLHNHHHQQQQQFHDYPQQQQQFHDHP 240
>C71BC_ARATH (Q9ZU07) Cytochrome P450 71B12 (EC 1.14.-.-)| Length = 496 Score = 32.7 bits (73), Expect = 0.86 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +1 Query: 409 FRVKGIVHWGIAGNASEDLQIGDVTIP-EYWAHVSLWNWQRFGD-GKDNELPL-EAAGDY 579 FR+ +V I AS+D++IG IP + W HV++W R + KD E + E D Sbjct: 356 FRINPLVPLLIPREASKDVKIGGYNIPKKTWIHVNIWAIHRNPNVWKDPEAFIPERFMDS 415 Query: 580 TREYGALNF 606 +Y LNF Sbjct: 416 QIDYKGLNF 424
>Y4JS_RHISN (P55519) Hypothetical 44.8 kDa protein y4jS| Length = 413 Score = 32.0 bits (71), Expect = 1.5 Identities = 14/56 (25%), Positives = 29/56 (51%) Frame = +1 Query: 313 RFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHWGIAGNASEDLQIGDV 480 +FG ++ + + + ++ AG+T ++LF+ K +V GI D +GD+ Sbjct: 198 KFGANTVSAICVCLPQMGLVAAGVTAAKAITLFKPKLVVMTGICAGRKGDCDLGDI 253
>C71BB_ARATH (P58049) Cytochrome P450 71B11 (EC 1.14.-.-)| Length = 496 Score = 32.0 bits (71), Expect = 1.5 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +1 Query: 409 FRVKGIVHWGIAGNASEDLQIGDVTIP-EYWAHVSLWNWQRFGD-GKDNELPL-EAAGDY 579 FRV +V I AS+D++IG IP + W HV++W R + KD E + E D Sbjct: 356 FRVLPLVPLLIPREASKDVKIGGYDIPKKTWIHVNIWAIHRNPNVWKDPEAFIPERFMDN 415 Query: 580 TREYGALNF 606 +Y LNF Sbjct: 416 QIDYKGLNF 424
>CDC54_YEAST (P30665) Cell division control protein 54| Length = 933 Score = 31.6 bits (70), Expect = 1.9 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +1 Query: 214 VVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGLTTQ 393 VVPN + P L SP+ S S DI GR +G+ + G S LN ++Q Sbjct: 19 VVPNPDSVPPQLSSPALFYSSSSSQGDIYGRNNSQNLSQGEGNIRAAIGSSPLNFPSSSQ 78
>ASSY_BACLD (Q65G67) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -3 Query: 336 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 187 ++ DG+ S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGTHYPLSDLILKLNELAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278
>ASSY_BACSU (O34347) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.2 bits (69), Expect = 2.5 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 336 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 187 ++ DG S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGVSYSLSELILKLNEMAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 30.8 bits (68), Expect = 3.3 Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Frame = -3 Query: 465 EVLAGVASDAPVDDALHPEQAQQHLGGQTSVEHAQSCHDHD------DALAFDGSKAKPS 304 E L ASDA +DA H +Q Q +H Q H H GS + P+ Sbjct: 650 EALKNGASDALSEDAHHQQQQHHQQQHQHQQQHHQQQHLHQQHHHHLQQQPNSGSNSNPA 709 Query: 303 PLDVHVRDALAGHEAGRLEHRNHL 232 D H L GH +HL Sbjct: 710 SNDHHHGHHLHGHGLLHPSSAHHL 733
>HUTI_PSESM (Q87UL9) Imidazolonepropionase (EC 3.5.2.7)| (Imidazolone-5-propionate hydrolase) Length = 401 Score = 30.8 bits (68), Expect = 3.3 Identities = 17/67 (25%), Positives = 27/67 (40%) Frame = -3 Query: 351 DHDDALAFDGSKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADG 172 +HD+ + G+ P +D H G+ +G E R L GV + E G + Sbjct: 46 EHDNCIDLGGAWVTPGLIDCHTHTVFGGNRSGEFEQR--LQGVSYAEIAAAGGGIASTVR 103 Query: 171 CPRLLSD 151 R S+ Sbjct: 104 ATRAASE 110
>MK15_RAT (Q9Z2A6) Mitogen-activated protein kinase 15 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 7) Length = 547 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = +3 Query: 330 RPKRRHGHDRTEHAQ--RWSDHPDAAEPVPGEGHRPLG 437 +P+ HGHD EH + R S P P PG G RP G Sbjct: 396 KPQNGHGHD-PEHVEVRRQSSDPLYQLPPPGSGERPPG 432
>ASSY_GEOKA (Q5KW94) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -3 Query: 318 KAKPSPLDVHVRDALAG-HEAGRLEH-RNHLVGVGHDEADERPGAV 187 KA P + +ALAG H GR++H N LVG+ E E PGA+ Sbjct: 232 KAYPLAQLILELNALAGKHGVGRIDHVENRLVGIKSREVYECPGAI 277
>MAP2_MOUSE (P20357) Microtubule-associated protein 2 (MAP 2)| Length = 1828 Score = 30.4 bits (67), Expect = 4.2 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -3 Query: 414 PEQAQQHLGGQTSVEHAQSCHDHDDALAFDGSKAKPSPLDVHVRD 280 PE+ ++ L V + D L F +KA+PS LD+ V D Sbjct: 1014 PEKTEKGLSSVPEVAEVEPTTKADQGLDFAATKAEPSQLDIKVSD 1058
>ASSY_STRR6 (Q8DRI5) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 398 Score = 29.6 bits (65), Expect = 7.2 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%) Frame = -3 Query: 414 PEQAQQHLGGQTSVEHAQSCHDHDDA-------LAFDGSKAKPSPLDVHVRDALAGHEAG 256 PE+A G TS E A ++ + ++ +G K + L + + H G Sbjct: 196 PEEA---FGITTSPEQAPDMPEYIEIEFSEGVPVSLNGEVLKLADLIQKLNEIAGKHGVG 252 Query: 255 RLEH-RNHLVGVGHDEADERPGAV 187 R++H N LVG+ E E PGAV Sbjct: 253 RIDHVENRLVGIKSREIYECPGAV 276
>GIDA_AQUAE (O66962) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 617 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Frame = -1 Query: 515 QRETWAQYSGMVTSPIWRSSLA--LPAMPQWTMPFTRNRLSSIWVVRPALSMLSPVMTMT 342 + + + + G+ T I+ + L+ LP QW M + L ++ ++RPA ++ V+ T Sbjct: 299 RHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPT 358 Query: 341 TLWPSMVPKR 312 L+P++ K+ Sbjct: 359 ELYPTLETKK 368
>ASSY_STRT2 (Q5M2K2) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 399 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 336 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 187 +A +G + K + L + H GR++H N LVG+ E E PGA+ Sbjct: 226 VALNGKEMKLADLIQEMNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI 276
>ASSY_STRT1 (Q5LXZ8) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 399 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -3 Query: 336 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 187 +A +G + K + L + H GR++H N LVG+ E E PGA+ Sbjct: 226 VALNGKEMKLADLIQEMNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI 276
>C71B1_THLAR (P49264) Cytochrome P450 71B1 (EC 1.14.-.-) (CYPLXXIB1)| Length = 496 Score = 29.6 bits (65), Expect = 7.2 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = +1 Query: 394 MLLSLFRVKGIVHWGIAGNASEDLQIGDVTIPE-YWAHVSLW 516 +L FR+ IV + A++DL+I +PE W HV++W Sbjct: 351 VLKETFRISPIVPVLVPRVAAKDLKIAGYDVPEKTWIHVNMW 392
>NORR2_RALEU (Q9K4U8) Nitric oxide reductase transcription regulator norR2| Length = 521 Score = 29.6 bits (65), Expect = 7.2 Identities = 20/58 (34%), Positives = 23/58 (39%) Frame = -3 Query: 321 SKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADGCPRLLSDV 148 S+ + PL VHV A E H G ERPG ADG P L +V Sbjct: 238 SRRRAQPL-VHVNCAALPESLAESELFGHARGAFSGATGERPGRFEAADGQPLFLDEV 294
>GCH1_CAEEL (Q19980) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)| Length = 223 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 325 IEGQSVVMVMTGLSMLNAGLTTQMLLSLFR 414 IE + MVM G+ +NA TT +L +FR Sbjct: 178 IEASHMCMVMRGVQKINASTTTSCMLGVFR 207
>HNF4A_RAT (P22449) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)| (Transcription factor HNF-4) (Transcription factor 14) Length = 465 Score = 29.3 bits (64), Expect = 9.5 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = -3 Query: 462 VLAGVASDAP-VDDALHPEQAQQHLGGQTSVEHAQSCH 352 +L G ASDAP LHP Q+H+G V + H Sbjct: 365 LLGGSASDAPHAHHPLHPHLMQEHMGTNVIVANTMPSH 402
>HNF4A_MOUSE (P49698) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)| (Transcription factor HNF-4) (Transcription factor 14) Length = 465 Score = 29.3 bits (64), Expect = 9.5 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = -3 Query: 462 VLAGVASDAP-VDDALHPEQAQQHLGGQTSVEHAQSCH 352 +L G ASDAP LHP Q+H+G V + H Sbjct: 365 LLGGSASDAPHTHHPLHPHLMQEHMGTNVIVANTMPSH 402
>SEPP1_BOVIN (P49907) Selenoprotein P-like protein precursor| Length = 402 Score = 29.3 bits (64), Expect = 9.5 Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 4/60 (6%) Frame = +3 Query: 255 AQLRGQQEHP*HGHPRAKVSLWNHRRPKRRHGHDRTEHAQRWS----DHPDAAEPVPGEG 422 A R HP H HP H P HGH E+A D PD E P G Sbjct: 200 ASQRHHHPHP-HSHPHPHPHPHPHPHPHPHHGHQLHENAHLSESPKPDTPDTPENPPTSG 258
>SMAD4_MOUSE (P97471) Mothers against decapentaplegic homolog 4 (SMAD 4)| (Mothers against DPP homolog 4) (Deletion target in pancreatic carcinoma 4 homolog) (Smad4) Length = 551 Score = 29.3 bits (64), Expect = 9.5 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 1/124 (0%) Frame = -3 Query: 546 VLAVAESXXXXXXXXXXXXXXXXXXXLEVLAGVASDAPVDDALHPEQAQQHLGGQTSVEH 367 +LA AES +LAG S+ + A P+ QQ Q Sbjct: 199 LLAPAESNATSTTNFPNIPVASTSQPASILAGSHSEGLLQIASGPQPGQQ----QNGFTA 254 Query: 366 AQSCHDHDDALAFDGSKAKP-SPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGA 190 S + H+ + GS+ P +P H ++ H H H V ++ A + P + Sbjct: 255 QPSTYHHNSTTTWTGSRTAPYTPNLPHHQNGHLQHHPRMPPHPGHYWPVHNELAFQPPIS 314 Query: 189 VRPA 178 PA Sbjct: 315 NHPA 318 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,260,624 Number of Sequences: 219361 Number of extensions: 1510876 Number of successful extensions: 5278 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 5055 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5266 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
