ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart24b09 |
|---|---|
| Clone Library Name | barley_pub |
>YG3L_YEAST (P48236) Hypothetical 51.6 kDa protein in RPL24B-RSR1 intergenic| region Length = 432 Score = 92.8 bits (229), Expect = 7e-19 Identities = 42/109 (38%), Positives = 62/109 (56%) Frame = +2 Query: 239 YLLGARPQDVPYVYCLFYVIFVPLRWIYYRYKKWHYYLLDFCYYANTFLLVMILFYPKDE 418 +L+G P+ Y + + + +P+R+ Y K HY+L DFCY+ N L+ I +P Sbjct: 128 FLMGRFPEWFHVYYTILFFVLMPIRFYTYYKTKNHYFLADFCYFVNMLCLLFIWIFPYSY 187 Query: 419 KLFMVCFSFAEGPLAWALIVWRCSLVFSSFDKLVSVLIHLLPGIVLFTI 565 LF CF+F G L +A+I WR SLV S DK S IH++P V++ I Sbjct: 188 SLFQSCFAFTFGTLCFAVITWRNSLVIHSIDKTTSCFIHIIPPCVMYVI 236
>CNG_ICTPU (P55934) Cyclic nucleotide-gated cation channel| Length = 682 Score = 35.8 bits (81), Expect = 0.096 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 8/74 (10%) Frame = +2 Query: 281 CLFYVIFVPL-----RWIYYRYKKWHYYLLDFCYYANTFLLVMILFYP---KDEKLFMVC 436 C++Y I L W+Y K + +C+Y +T L I P KDE+ V Sbjct: 288 CIYYAISKALGLSSDTWVYSGQNKTLSFCYVYCFYWSTLTLTTIGEMPPPVKDEEYVFVV 347 Query: 437 FSFAEGPLAWALIV 478 F F G L +A IV Sbjct: 348 FDFLVGVLIFATIV 361
>Y061_MYCGE (P47307) Hypothetical protein MG061| Length = 461 Score = 33.9 bits (76), Expect = 0.36 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%) Frame = +2 Query: 278 YCLFYVIFVPLRWIYYRYKKWHYYLLDFCYYANTFLLVMILFYPKDEKL-------FMVC 436 Y L +V+F P Y K+W ++LL AN +L++I+ + + + Sbjct: 270 YALGFVVFSPFNKTIYDKKRWMHFLLT----ANIVVLLIIIMFAATLGIGSAAGFALISI 325 Query: 437 FSFAEGPLAWAL 472 FSF G AW+L Sbjct: 326 FSFIGGAFAWSL 337
>NU5M_ACACA (Q37372) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 675 Score = 33.5 bits (75), Expect = 0.48 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 4/102 (3%) Frame = +2 Query: 266 VPYVYCLFYVIFVPLRWIYYRY-KKWHYYLLDFCYYANTFLLVMIL-FYPKDEKLFMVCF 439 V Y Y +F V R+ Y+ KKW++ LL Y N F+ ++ FY K+ Sbjct: 538 VIYDYTVFVVKNKFFRYAYFFLAKKWYFDLL----YNNIFVFNLLSSFYLLTFKIIDRGL 593 Query: 440 SFAEGPLAWALIVWRCSLVFSSFDK--LVSVLIHLLPGIVLF 559 GPL++ ++ + S++FSSF L + + +L G++ F Sbjct: 594 IELFGPLSFVRLINKSSIIFSSFQTGFLYNYIFVVLLGLMFF 635
>ARE1_SACBA (Q876L3) Sterol O-acyltransferase 1 (EC 2.3.1.26) (Sterol-ester| synthase 1) Length = 623 Score = 33.5 bits (75), Expect = 0.48 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 19/125 (15%) Frame = +2 Query: 272 YVYCLFYVIFVPLRWIYYRYKKWHYYLLDFCYYANTFLLVMILFYPKDEKLFMVCFSFAE 451 +++C+F V+ + + + +W Y L FC T L+M+ + M C + + Sbjct: 390 FMFCMFPVLVYQINYPRTSHIRWRYVLEKFCAIMGTIFLMMVTAQIFMHPVAMRCIEYHD 449 Query: 452 GP---------LAWALIVWRCSLVFS-----SFDKLVSVLIHLLPGIVLFTIR-----WW 574 P W +++ FS +F + L++ + + F R WW Sbjct: 450 TPSFGGWVPAVKQWLFLLFEMIPGFSVLYMLTFYMIWDALLNCVAELTRFADRYFYGDWW 509 Query: 575 NPQTF 589 N +F Sbjct: 510 NCVSF 514
>OPT1_YEAST (P40897) Oligopeptide transporter 1| Length = 799 Score = 32.0 bits (71), Expect = 1.4 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 3/112 (2%) Frame = +2 Query: 248 GARPQDVPYVYCLFYVIFVPLRWIYYRYKKW---HYYLLDFCYYANTFLLVMILFYPKDE 418 G P PY Y LF+ + L I R++ W + +++ A + V+I+F Sbjct: 701 GNIPPSTPYNYSLFFAMSFCLNLIRKRWRAWFNKYNFVMGAGVEAGVAISVVIIF----- 755 Query: 419 KLFMVCFSFAEGPLAWALIVWRCSLVFSSFDKLVSVLIHLLPGIVLFTIRWW 574 +C + G L+W W ++ ++D L G +WW Sbjct: 756 ----LCVQYPGGKLSW----WGNNVWKRTYDNDYKKFYTLKKGETFGYDKWW 799
>CNGA2_RAT (Q00195) Cyclic nucleotide-gated olfactory channel (Cyclic| nucleotide-gated cation channel 2) (CNG channel 2) (CNG2) (CNG-2) (OCNC1) Length = 664 Score = 31.2 bits (69), Expect = 2.4 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 12/89 (13%) Frame = +2 Query: 281 CLFYVIFVPL-----RWIYYRYKKWHYYLLD----FCYYANTFLLVMILFYP---KDEKL 424 C++YVI + W+Y Y L +C Y +T L I P KDE+ Sbjct: 293 CIYYVISKSIGFGVDTWVYPNITDPEYGYLAREYIYCLYWSTLTLTTIGETPPPVKDEEY 352 Query: 425 FMVCFSFAEGPLAWALIVWRCSLVFSSFD 511 V F F G L +A IV + S+ + Sbjct: 353 LFVIFDFLIGVLIFATIVGNVGSMISNMN 381
>CNGA2_BOVIN (Q03041) Cyclic nucleotide-gated olfactory channel (Cyclic| nucleotide-gated cation channel 2) (CNG channel 2) (CNG-2) (CNG2) Length = 663 Score = 30.4 bits (67), Expect = 4.0 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%) Frame = +2 Query: 281 CLFYVIFVPL-----RWIYYRYKKWHYYLLD----FCYYANTFLLVMILFYP---KDEKL 424 C++Y I + W+Y Y L +C Y +T L I P KDE+ Sbjct: 291 CIYYAISKSIGFGVDTWVYPNITDPEYGYLSREYIYCLYWSTLTLTTIGETPPPVKDEEY 350 Query: 425 FMVCFSFAEGPLAWALIVWRCSLVFSSFD 511 V F F G L +A IV + S+ + Sbjct: 351 LFVIFDFLIGVLIFATIVGNVGSMISNMN 379
>YKD0_YEAST (P36099) Hypothetical 23.0 kDa protein in IXR1-TFA1 intergenic| region Length = 201 Score = 30.0 bits (66), Expect = 5.3 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +2 Query: 278 YCLFYVIFVPLRWIYYRYKKWHYY 349 YC +Y I V L + YY Y ++YY Sbjct: 10 YCFYYCIIVLLLYYYYYYYYYYYY 33
>NU5M_MYXGL (Q9G2W8) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 601 Score = 29.6 bits (65), Expect = 6.9 Identities = 21/103 (20%), Positives = 51/103 (49%), Gaps = 6/103 (5%) Frame = +2 Query: 275 VYCL-FYVIFVPLRWIYYRYKKWHYYLLD---FCYYANTFLLVMILFYPKDEKLFMVCFS 442 +YCL F+ I + + W ++ W+ + + F Y FL+ M+ F + L ++ Sbjct: 82 MYCLTFFSIALYITWSIMQFSLWYMHEHNNTLFFKYLTMFLISMLFFLSANNLLQLILGW 141 Query: 443 FAEGPLAWALIVWRCSLVFSSFDKLVSVLIHLL--PGIVLFTI 565 G +++ LI W + + ++ + +++ + + G+++F I Sbjct: 142 EGMGIMSFLLINWWHNRLEANSAAMQAIIYNRIGDTGLIIFMI 184
>CNGA2_RABIT (Q28718) Cyclic nucleotide-gated olfactory channel (Cyclic| nucleotide-gated cation channel 2) (CNG channel 2) (CNG-2) (CNG2) (Aorta CNG channel) (RACNG) Length = 664 Score = 29.6 bits (65), Expect = 6.9 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%) Frame = +2 Query: 281 CLFYVIFVPL-----RWIYYRYKKWHYYLLD----FCYYANTFLLVMILFYP---KDEKL 424 C++Y I + W+Y Y L +C Y +T L I P KDE+ Sbjct: 291 CIYYAISKSIGFGVDTWVYPNITDPEYGYLAREYIYCLYWSTLTLTTIGETPPPVKDEEY 350 Query: 425 FMVCFSFAEGPLAWALIVWRCSLVFSSFD 511 V F F G L +A IV + S+ + Sbjct: 351 LFVIFDFLIGVLIFATIVGNVGSMISNMN 379
>NU5M_BRAFL (O47430) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 599 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 6/105 (5%) Frame = +2 Query: 281 CLFYVIFVPLRWIYYRYKKWHYYLLD-----FCYYANTFLLVMILFYPKDEKLFMVCFSF 445 C F+V+ + + W + ++Y D FC Y FL+ M+L E LF + + Sbjct: 80 CCFFVVGLYVTWNILMFS-FYYMSTDPRIDLFCKYLGLFLIAMLLLV-SAESLFQLLIGW 137 Query: 446 -AEGPLAWALIVWRCSLVFSSFDKLVSVLIHLLPGIVLFTIRWWN 577 G +++ LI W + ++ L ++ + + I L + W+ Sbjct: 138 EGVGIMSYLLISWWYARSDANTAALQAIFYNRVGDIGLLIMLMWS 182
>NU5M_BRALA (O79422) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 598 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 6/105 (5%) Frame = +2 Query: 281 CLFYVIFVPLRWIYYRYKKWHYYLLD-----FCYYANTFLLVMILFYPKDEKLFMVCFSF 445 C F+V+ + + W + ++Y D FC Y FL+ M+L E LF + + Sbjct: 80 CCFFVVGLYVTWNILMFS-FYYMSTDPRIDLFCKYLGLFLIAMLLLV-SAESLFQLLIGW 137 Query: 446 -AEGPLAWALIVWRCSLVFSSFDKLVSVLIHLLPGIVLFTIRWWN 577 G +++ LI W + ++ L ++ + + I L + W+ Sbjct: 138 EGVGIMSYLLISWWYARSDANTAALQAIFYNRVGDIGLLIMLMWS 182
>SCNNG_MOUSE (Q9WU39) Amiloride-sensitive sodium channel gamma-subunit| (Epithelial Na+ channel gamma subunit) (Gamma ENaC) (Nonvoltage-gated sodium channel 1 gamma subunit) (SCNEG) (Gamma NaCH) Length = 655 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = +2 Query: 461 AWALIVWRCS-LVFSSFDKLVSVLIHL----LPGIVLFTIRWWNPQTFAA 595 A ALI+W+C+ LVFS + VS+ +H P + + I NP ++A Sbjct: 63 AVALIIWQCALLVFSFYTVSVSIKVHFQKLDFPAVTICNI---NPYKYSA 109
>ZDHC5_PONPY (Q5R838) Probable palmitoyltransferase ZDHHC5 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 5) (DHHC-5) Length = 715 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 7/49 (14%) Frame = +2 Query: 185 FIFKVT-HLMGVLGFGTFCYLL------GARPQDVPYVYCLFYVIFVPL 310 F+ +T H+MGV GFG L G R D V C+ + F+P+ Sbjct: 152 FLLSLTAHIMGVFGFGLLYVLYHIEELSGVRTADTMAVMCVAGLFFIPV 200
>SCNNG_RAT (P37091) Amiloride-sensitive sodium channel gamma-subunit| (Epithelial Na+ channel gamma subunit) (Gamma ENaC) (Nonvoltage-gated sodium channel 1 gamma subunit) (SCNEG) (Gamma NaCH) Length = 650 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = +2 Query: 461 AWALIVWRCS-LVFSSFDKLVSVLIHL----LPGIVLFTIRWWNPQTFAA 595 A ALI+W+C+ LVFS + VS+ +H P + + I NP ++A Sbjct: 63 AVALIIWQCALLVFSFYTVSVSIKVHFQKLDFPAVTICNI---NPYKYSA 109
>ARE1_YEAST (P25628) Sterol O-acyltransferase 1 (EC 2.3.1.26) (Sterol-ester| synthase 1) Length = 610 Score = 29.3 bits (64), Expect = 9.0 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 19/125 (15%) Frame = +2 Query: 272 YVYCLFYVIFVPLRWIYYRYKKWHYYLLDFCYYANTFLLVMILFYPKDEKLFMVCFSFAE 451 +++CLF V+ + + +W Y L C T L+M+ + M C F Sbjct: 377 FMFCLFPVLVYQINYPRTSRIRWRYVLEKVCAIIGTIFLMMVTAQFFMHPVAMRCIQFHN 436 Query: 452 GP--------------LAWALIVWRCSLVFSSFDKLVSVLIHLLPGIVLFTIR-----WW 574 P L + +I L +F + L++ + + F R WW Sbjct: 437 TPTFGGWIPATQEWFHLLFDMIPGFTVLYMLTFYMIWDALLNCVAELTRFADRYFYGDWW 496 Query: 575 NPQTF 589 N +F Sbjct: 497 NCVSF 501 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,219,105 Number of Sequences: 219361 Number of extensions: 1634666 Number of successful extensions: 4382 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4243 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4378 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
