ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart24b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1791_STRMU (Q8DSJ2) UPF0348 protein SMU.1791c 30 6.4
2NU2M_LOCMI (Q36426) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 30 6.4

>Y1791_STRMU (Q8DSJ2) UPF0348 protein SMU.1791c|
          Length = 366

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -1

Query: 498 QERNIIYHNREPTCIFSSPVCLHHSLKATVQLSQAISN----DTSPCSTWE 358
           Q R   YH+ E T  ++S   L H  +    +++++ N     TSP  TWE
Sbjct: 174 QRRGADYHSTEKTVAYASATSLRHHRQDPAFVAKSMPNANLFQTSPQVTWE 224



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>NU2M_LOCMI (Q36426) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 342

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +2

Query: 386 LLIAWLSCTVAFREWWRHTGLEKMQVGSRL**MM----FRSWKLLPMVLQMMSWTSCIIV 553
           LLI+ L   + +  WW +  +  M + S +   M    F  W  LP V+   SW +C+++
Sbjct: 71  LLISILIIQMKYMMWWDNKNIPSMMIMSSMMMKMGAAPFHFW--LPEVMSSTSWINCLML 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,683,782
Number of Sequences: 219361
Number of extensions: 1189823
Number of successful extensions: 3611
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3609
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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