ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart24b05 |
|---|---|
| Clone Library Name | barley_pub |
>CAP1_RAT (Q08163) Adenylyl cyclase-associated protein 1 (CAP 1)| Length = 473 Score = 54.3 bits (129), Expect = 2e-07 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 1/109 (0%) Frame = +3 Query: 195 PSILAYDDFVADAFGRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAKQHPKPASMAN 374 P + A+D +A+ +++IGG V + ++ + + LLV A Q +PA Sbjct: 40 PYVQAFDSLLANPVAEYLKMSKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGN-K 98 Query: 375 AQDFFKPLNDTIAKATAMTEGRRPD-YFNHMKSVADSLAALAWVAFLGK 518 D P+++ I + E R +FNH+ +V++S+ AL WVA K Sbjct: 99 LSDLLAPISEQIQEVITFREKNRGSKFFNHLSAVSESIQALGWVALAAK 147
>CAP1_MOUSE (P40124) Adenylyl cyclase-associated protein 1 (CAP 1)| Length = 473 Score = 52.8 bits (125), Expect = 7e-07 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Frame = +3 Query: 195 PSILAYDDFVADAFGRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAKQHPKPASMAN 374 P + A+D +A+ +++IGG V + ++ + + LL A Q +PA Sbjct: 40 PYVQAFDSLLANPVAEYLKMSKEIGGDVQKHAEMVHTGLKLERALLATASQCQQPAGN-K 98 Query: 375 AQDFFKPLNDTIAKATAMTEGRRPD-YFNHMKSVADSLAALAWVAFLGK 518 D P+++ I + E R +FNH+ +V++S+ AL WVA K Sbjct: 99 LSDLLAPISEQIQEVITFREKNRGSKFFNHLSAVSESIQALGWVALAAK 147
>CAP1_HUMAN (Q01518) Adenylyl cyclase-associated protein 1 (CAP 1)| Length = 474 Score = 52.4 bits (124), Expect = 9e-07 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 1/113 (0%) Frame = +3 Query: 183 AASDPSILAYDDFVADAFGRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAKQHPKPA 362 A + P + A+D +A +++IGG V + ++ + + LLV A Q +PA Sbjct: 37 AGAAPYVQAFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPA 96 Query: 363 SMANAQDFFKPLNDTIAKATAMTEGRRPD-YFNHMKSVADSLAALAWVAFLGK 518 D P+++ I + E R FNH+ +V++S+ AL WVA K Sbjct: 97 EN-KLSDLLAPISEQIKEVITFREKNRGSKLFNHLSAVSESIQALGWVAMAPK 148
>CAP2_RAT (P52481) Adenylyl cyclase-associated protein 2 (CAP 2)| Length = 477 Score = 49.3 bits (116), Expect = 7e-06 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 1/105 (0%) Frame = +3 Query: 195 PSILAYDDFVADAFGRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAKQHPKPASMAN 374 PS+ A+D + + + G V ++ AF + L+ QH +P Sbjct: 45 PSVEAFDKLINSMVAEFLKNSRVLAGDVETHAEMVHGAFQAQRAFLLMVSQHQQPQENEV 104 Query: 375 AQDFFKPLNDTIAKATAMTEGRR-PDYFNHMKSVADSLAALAWVA 506 A KP+++ I + E R D FNH+ +V++S+AAL W+A Sbjct: 105 AV-LLKPISEKIQEIQTFRERNRGSDMFNHLSAVSESIAALGWIA 148
>CAP_SCHPO (P36621) Adenylyl cyclase-associated protein (CAP)| Length = 551 Score = 48.5 bits (114), Expect = 1e-05 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Frame = +3 Query: 177 ALAASDPSILAYDDFVADAFGRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAKQHPK 356 A+ A SI AYD+F + + ++KIGG + E + + +AF + + +L A + K Sbjct: 98 AVEAVPASISAYDEFCSKYLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALKAQK 157 Query: 357 P-ASMANAQDFFKPLNDTIAKATAM-TEGRRPDYFNHMKSVADSLAALAWV 503 P +F KP+ + T + E R FN + +V ++ L WV Sbjct: 158 PDMDSPELLEFLKPIQSELLTITNIRDEHRTAPEFNQLSTVMSGISILGWV 208
>CAP2_HUMAN (P40123) Adenylyl cyclase-associated protein 2 (CAP 2)| Length = 477 Score = 48.1 bits (113), Expect = 2e-05 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%) Frame = +3 Query: 165 DLGGALAASDPSILAYDDFVADAFGRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAK 344 ++ G +A PS+ A+D + + + G V ++ AF + L+ A Sbjct: 34 EVNGVIAGVAPSVEAFDKLMDSMVAEFLKNSRILAGDVETHAEMVHSAFQAQRAFLLMAS 93 Query: 345 QHPKPASMANAQDFFKPLNDTIAKATAMTEGRR-PDYFNHMKSVADSLAALAWVA 506 Q+ +P A KP+++ I + E R + FNH+ +V++S+ AL W+A Sbjct: 94 QYQQPHENDVAA-LLKPISEKIQEIQTFRERNRGSNMFNHLSAVSESIPALGWIA 147
>CAP2_MOUSE (Q9CYT6) Adenylyl cyclase-associated protein 2 (CAP 2)| Length = 476 Score = 45.8 bits (107), Expect = 8e-05 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 1/115 (0%) Frame = +3 Query: 165 DLGGALAASDPSILAYDDFVADAFGRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAK 344 ++ G PS+ A+D + + + G V ++ AF + L+ Sbjct: 34 EVNGVNGGVAPSVEAFDKLINSMVAEFLKNSRVLAGDVETHAEMVHGAFQAQRAFLLMVS 93 Query: 345 QHPKPASMANAQDFFKPLNDTIAKATAMTEGRR-PDYFNHMKSVADSLAALAWVA 506 Q+ +P A KP+++ I + E R + FNH+ +V++S+AAL W+A Sbjct: 94 QYQQPQENEVAV-LLKPISEKIQEIQTFRERNRGSNMFNHLSAVSESIAALGWIA 147
>CAP_DICDI (P54654) Adenylyl cyclase-associated protein (CAP)| Length = 464 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 1/111 (0%) Frame = +3 Query: 174 GALAASDPSILAYDDFVADAFGRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAKQHP 353 GA S S+ + + V A ++K+ +V L +A K L+ A Q Sbjct: 43 GAAGPSSASVKEFQNLVDQHITPFVALSKKLAPEVGNQVEQLVKAIDAEKALINTASQSK 102 Query: 354 KPASMANAQDFFKPLNDTIAKATAMTEGRRPD-YFNHMKSVADSLAALAWV 503 KP S + KPLN+ A+ + + R +FN++ ++++S+ L+WV Sbjct: 103 KP-SQETLLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFLSWV 152
>CAP_CHLVR (P40122) Adenylyl cyclase-associated protein (CAP)| Length = 481 Score = 42.4 bits (98), Expect = 9e-04 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Frame = +3 Query: 264 IGGKVLEATSVLAEAFAIAKDLLVQAKQHPKPASMANAQDFFKPLNDTIAKATAMTEGRR 443 +GG++ + + EAF L+ A +H +P S + + KPL++ I+K E R Sbjct: 59 LGGELEQMGKFVNEAFHCHLVLMEVAARHNRP-SQTDLEGLLKPLSEAISKVQDFREKNR 117 Query: 444 PD-YFNHMKSVADSLAALAWVAFLGK 518 FNH+ ++++ L L WV K Sbjct: 118 SSKQFNHLSAISEGLPFLGWVGVAPK 143
>CAP_YEAST (P17555) Adenylyl cyclase-associated protein (CAP)| Length = 526 Score = 38.9 bits (89), Expect = 0.010 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 3/108 (2%) Frame = +3 Query: 192 DPS-ILAYDDFVADAFGRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAKQHPKPA-S 365 DP I A+ ++ + L + KI VL+A +L F L A + KP S Sbjct: 74 DPKCITAFQSYIGENIDPLVELSGKIDTVVLDALQLLKGGFQSQLTFLRAAVRSRKPDYS 133 Query: 366 MANAQDFFKPLNDTIAKATAMTEGRRPD-YFNHMKSVADSLAALAWVA 506 D +P+N+ I K + E R YF ++ ++++ +WVA Sbjct: 134 SQTFADSLRPINENIIKLGQLKESNRQSKYFAYLSALSEGAPLFSWVA 181
>GLYA_DESVH (Q72CT0) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 412 Score = 33.5 bits (75), Expect = 0.41 Identities = 34/124 (27%), Positives = 46/124 (37%), Gaps = 34/124 (27%) Frame = +3 Query: 234 FGRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAKQHPKPASMAN------------- 374 F R A A+++G K++ + +A LV A HP P A+ Sbjct: 180 FARFRAIADEVGAKLMVDMAHIAG--------LVAAGYHPSPVQHAHYTTTTTHKTLRGP 231 Query: 375 -------AQDFFKPLNDTI--------------AKATAMTEGRRPDYFNHMKSVADSLAA 491 +D K LN I AKA A E RP + + K V D+ AA Sbjct: 232 RGGMILSTEDNGKTLNSQIFPGIQGGPLMHVIAAKAVAFGEALRPAFKEYQKQVVDNAAA 291 Query: 492 LAWV 503 LA V Sbjct: 292 LAGV 295
>HPCE_ECOLI (P37352) Homoprotocatechuate catabolism bifunctional| isomerase/decarboxylase [Includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.10) (HHDD isomerase) (5-carboxymethyl-2-hydroxymuconate delta-isomerase); 5-carboxymethyl-2-oxo-hex Length = 427 Score = 31.2 bits (69), Expect = 2.0 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 10/78 (12%) Frame = +3 Query: 309 FAIAKDLLVQAKQHPKPASMANAQDFFKPLNDTIA-----KATAMTE--GRRPDYFNH-- 461 +A+A D+ + + +PA A +D F P+ +T+A T TE GR D++N Sbjct: 89 YALANDVSLPEESFYRPAIKAKCRDGFCPIGETVALSNVDNLTIYTEINGRPADHWNTSD 148 Query: 462 -MKSVADSLAALAWVAFL 512 ++ A L+AL+ A L Sbjct: 149 LQRNAAQLLSALSEFATL 166
>HPAG_ECOLI (Q46978) 4-hydroxyphenylacetate degradation bifunctional| isomerase/decarboxylase [Includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.10) (HHDD isomerase) (5-carboxymethyl-2-hydroxymuconate delta-isomerase); 5-carboxymethyl-2-oxo Length = 429 Score = 31.2 bits (69), Expect = 2.0 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 10/78 (12%) Frame = +3 Query: 309 FAIAKDLLVQAKQHPKPASMANAQDFFKPLNDTIA-----KATAMTE--GRRPDYFNH-- 461 +A+A D+ + + +PA A +D F P+ +T+A T TE GR D++N Sbjct: 89 YALANDVSLPEESFYRPAIKAKCRDGFCPIGETVALSNVDNLTIYTEINGRPADHWNTAD 148 Query: 462 -MKSVADSLAALAWVAFL 512 ++ A L+AL+ A L Sbjct: 149 LQRNAAQLLSALSEFATL 166
>PGK_DEIRA (Q9RUP2) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 411 Score = 31.2 bits (69), Expect = 2.0 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%) Frame = +3 Query: 213 DDFVADAFG---RLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAKQHPKPASMANAQ- 380 D FV DAFG R +++ + GK+ A L ++ A L+ A +HP + A+ Sbjct: 160 DAFVLDAFGSAHRAHSSVSGVAGKLPHAAGGLLQSEVDALGKLLHAPEHPYVVIIGGAKV 219 Query: 381 -DFFKPLNDTIAKATAMTEG 437 D K + + + K M G Sbjct: 220 SDKIKVIENLLPKVDRMLIG 239
>EFG1_BDEBA (Q6MJ13) Elongation factor G 1 (EF-G 1)| Length = 701 Score = 30.8 bits (68), Expect = 2.7 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 8/47 (17%) Frame = +3 Query: 213 DDFVADAFGRLNAAAEKI--------GGKVLEATSVLAEAFAIAKDL 329 DDFV + G LNA KI GG+V+ A + LA F A D+ Sbjct: 620 DDFVGNIVGDLNARRGKILAMNVKQGGGQVISAEAPLASLFGYATDV 666
>YEAG_ECOLI (P0ACY3) Hypothetical protein yeaG| Length = 644 Score = 29.6 bits (65), Expect = 5.9 Identities = 13/49 (26%), Positives = 28/49 (57%) Frame = +3 Query: 321 KDLLVQAKQHPKPASMANAQDFFKPLNDTIAKATAMTEGRRPDYFNHMK 467 + L + ++ KPA ++N +DF + + + +A A GR P++ ++ K Sbjct: 531 ESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEK 579
>YEAG_ECOL6 (P0ACY4) Hypothetical protein yeaG| Length = 644 Score = 29.6 bits (65), Expect = 5.9 Identities = 13/49 (26%), Positives = 28/49 (57%) Frame = +3 Query: 321 KDLLVQAKQHPKPASMANAQDFFKPLNDTIAKATAMTEGRRPDYFNHMK 467 + L + ++ KPA ++N +DF + + + +A A GR P++ ++ K Sbjct: 531 ESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEK 579
>YEAG_ECO57 (P0ACY5) Hypothetical protein yeaG| Length = 644 Score = 29.6 bits (65), Expect = 5.9 Identities = 13/49 (26%), Positives = 28/49 (57%) Frame = +3 Query: 321 KDLLVQAKQHPKPASMANAQDFFKPLNDTIAKATAMTEGRRPDYFNHMK 467 + L + ++ KPA ++N +DF + + + +A A GR P++ ++ K Sbjct: 531 ESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEK 579
>R1_CITRE (Q8LPT9) Alpha-glucan water dikinase, chloroplast precursor (EC| 2.7.9.4) (Starch-related R1 protein) Length = 1475 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +3 Query: 228 DAFGRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAKQ 347 D G A EKI G +EA F IA DL+ +AK+ Sbjct: 562 DGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKE 601
>DEE76_CHLPR (Q9XFY6) Degreening-related gene dee76 protein| Length = 321 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = +3 Query: 279 LEATSVLAEAFAIAKDLLVQAKQHPKPASMANAQDFFKPLNDTIAKATAMT 431 +++ V ++AFA KDLL + KQ N +DFF L+ + +T Sbjct: 162 VQSFEVASDAFATFKDLLTRHKQLVAAFLQENYEDFFSQLDKLLTSDNYVT 212
>DNLJ_MYCTU (P63973) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) Length = 691 Score = 29.3 bits (64), Expect = 7.8 Identities = 21/83 (25%), Positives = 35/83 (42%) Frame = +3 Query: 237 GRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAKQHPKPASMANAQDFFKPLNDTIAK 416 GRL A+ + G+ E ++ A A + L +P P + + F L+D A Sbjct: 136 GRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFFRLDDFQAL 195 Query: 417 ATAMTEGRRPDYFNHMKSVADSL 485 ++ E + + N S A SL Sbjct: 196 NASLVEEGKAPFANPRNSAAGSL 218
>DNLJ_MYCBO (P63974) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) Length = 691 Score = 29.3 bits (64), Expect = 7.8 Identities = 21/83 (25%), Positives = 35/83 (42%) Frame = +3 Query: 237 GRLNAAAEKIGGKVLEATSVLAEAFAIAKDLLVQAKQHPKPASMANAQDFFKPLNDTIAK 416 GRL A+ + G+ E ++ A A + L +P P + + F L+D A Sbjct: 136 GRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFFRLDDFQAL 195 Query: 417 ATAMTEGRRPDYFNHMKSVADSL 485 ++ E + + N S A SL Sbjct: 196 NASLVEEGKAPFANPRNSAAGSL 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,292,649 Number of Sequences: 219361 Number of extensions: 840129 Number of successful extensions: 3054 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2971 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3047 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
