Clone Name | bart24a06 |
---|---|
Clone Library Name | barley_pub |
>emb|CT573044.1| Pig DNA sequence from clone XX-BE156J14 on chromosome 14, complete sequence Length = 184551 Score = 40.1 bits (20), Expect = 0.81 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 cagcctccttcctactcctc 41 |||||||||||||||||||| Sbjct: 28263 cagcctccttcctactcctc 28244
>gb|DQ214471.1| Taeniopygia guttata clone 0063P0008E11 downregulated in renal cell carcinoma-like mRNA, complete sequence Length = 908 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gcggccgggcagcctcctt 31 ||||||||||||||||||| Sbjct: 306 gcggccgggcagcctcctt 324
>ref|NM_178572.2| Bos taurus carbonic anhydrase II (CA2), mRNA Length = 1481 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 ccgggcagcctccttccta 35 ||||||||||||||||||| Sbjct: 587 ccgggcagcctccttccta 605
>gb|AC116595.4| Mus musculus BAC clone RP24-127G9 from chromosome 18, complete sequence Length = 158788 Score = 38.2 bits (19), Expect = 3.2 Identities = 25/27 (92%) Strand = Plus / Plus Query: 16 gccgggcagcctccttcctactcctcg 42 ||||||||||||||| ||| ||||||| Sbjct: 46135 gccgggcagcctcctccctcctcctcg 46161
>ref|XM_653100.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0588.2), mRNA Length = 1467 Score = 38.2 bits (19), Expect = 3.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 29 cttcctactcctcgagactatcc 51 |||||| |||||||||||||||| Sbjct: 463 cttccttctcctcgagactatcc 441
>gb|AY484970.1|AY484967S4 Homo sapiens type XVIII collagen gene, exons 21 through 33 Length = 9810 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 ggccgggcagcctccttcc 33 ||||||||||||||||||| Sbjct: 3641 ggccgggcagcctccttcc 3659
>emb|AL139244.21| Human DNA sequence from clone RP5-1043G4 on chromosome 1p32.1-33 Contains the 3' end of a novel gene (FLJ46354), the TTC4 gene for tetratricopeptide repeat domain 4, a novel gene (DKFZp727A071), the 3' end of a novel gene (FLJ20619) and three CpG islands, complete sequence Length = 129156 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 cagcctccttcctactcct 40 ||||||||||||||||||| Sbjct: 86978 cagcctccttcctactcct 86996
>gb|AC153155.6| Mus musculus BAC clone RP23-25J23 from chromosome 18, complete sequence Length = 227880 Score = 38.2 bits (19), Expect = 3.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 16 gccgggcagcctccttcctactcctcg 42 ||||||||||||||| ||| ||||||| Sbjct: 12677 gccgggcagcctcctccctcctcctcg 12651
>emb|AL954258.2| Pan troglodytes chromosome 22 clone PTB-146D01 map 22q22.3, complete sequence Length = 185080 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 ggccgggcagcctccttcc 33 ||||||||||||||||||| Sbjct: 115257 ggccgggcagcctccttcc 115275
>gb|BC103260.1| Bos taurus carbonic anhydrase II, mRNA (cDNA clone MGC:128557 IMAGE:7985245), complete cds Length = 1522 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 ccgggcagcctccttccta 35 ||||||||||||||||||| Sbjct: 641 ccgggcagcctccttccta 659
>gb|AC104365.4| Homo sapiens chromosome 18, clone RP11-108P20, complete sequence Length = 157871 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 ggccgggcagcctccttcc 33 ||||||||||||||||||| Sbjct: 55093 ggccgggcagcctccttcc 55075
>gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complete sequence Length = 222605 Score = 38.2 bits (19), Expect = 3.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 15 ggccgggcagcctccttcctact 37 |||||||||||| |||||||||| Sbjct: 112144 ggccgggcagccaccttcctact 112166
>gb|BC109594.1| Bos taurus cDNA clone IMAGE:8049591 Length = 957 Score = 38.2 bits (19), Expect = 3.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 48 atcctctgctccgcaaccttcct 70 |||||||||||| |||||||||| Sbjct: 309 atcctctgctccacaaccttcct 287
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gcggccgggcagcctcctt 31 ||||||||||||||||||| Sbjct: 27847641 gcggccgggcagcctcctt 27847659
>gb|AY240020.1| Bos taurus carbonic anhydrase II mRNA, complete cds Length = 1481 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 ccgggcagcctccttccta 35 ||||||||||||||||||| Sbjct: 587 ccgggcagcctccttccta 605
>gb|AC004962.1|AC004962 Homo sapiens PAC clone RP5-1099N7 from 1, complete sequence Length = 143749 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 cagcctccttcctactcct 40 ||||||||||||||||||| Sbjct: 89779 cagcctccttcctactcct 89761
>emb|AL163302.2|HS21C102 Homo sapiens chromosome 21 segment HS21C102 Length = 340000 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 ggccgggcagcctccttcc 33 ||||||||||||||||||| Sbjct: 192351 ggccgggcagcctccttcc 192369
>dbj|AK066501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074D11, full insert sequence Length = 1094 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 gcggccgggcagcctcctt 31 ||||||||||||||||||| Sbjct: 151 gcggccgggcagcctcctt 133
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gcggccgggcagcctcctt 31 ||||||||||||||||||| Sbjct: 27871629 gcggccgggcagcctcctt 27871647
>emb|BX322561.1|HSE12310 Homo sapiens chromosome 21 from PAC RPCI-1 RP1-310E12 map 21q22.3 region D21S171-LA161, complete sequence Length = 131563 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 ggccgggcagcctccttcc 33 ||||||||||||||||||| Sbjct: 52663 ggccgggcagcctccttcc 52681
>dbj|AB209069.1| Homo sapiens mRNA for solute carrier family 19 member 1 isoform b variant protein Length = 3567 Score = 38.2 bits (19), Expect = 3.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 ggccgggcagcctccttcc 33 ||||||||||||||||||| Sbjct: 3558 ggccgggcagcctccttcc 3540 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 442,736 Number of Sequences: 3902068 Number of extensions: 442736 Number of successful extensions: 30807 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30782 Number of HSP's gapped (non-prelim): 25 length of query: 78 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 57 effective length of database: 17,151,101,840 effective search space: 977612804880 effective search space used: 977612804880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)