ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart24a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT573044.1| Pig DNA sequence from clone XX-BE156J14 on chrom... 40 0.81
2gb|DQ214471.1| Taeniopygia guttata clone 0063P0008E11 downregula... 38 3.2
3ref|NM_178572.2| Bos taurus carbonic anhydrase II (CA2), mRNA 38 3.2
4gb|AC116595.4| Mus musculus BAC clone RP24-127G9 from chromosome... 38 3.2
5ref|XM_653100.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 3.2
6gb|AY484970.1|AY484967S4 Homo sapiens type XVIII collagen gene, ... 38 3.2
7emb|AL139244.21| Human DNA sequence from clone RP5-1043G4 on chr... 38 3.2
8gb|AC153155.6| Mus musculus BAC clone RP23-25J23 from chromosome... 38 3.2
9emb|AL954258.2| Pan troglodytes chromosome 22 clone PTB-146D01 m... 38 3.2
10gb|BC103260.1| Bos taurus carbonic anhydrase II, mRNA (cDNA clon... 38 3.2
11gb|AC104365.4| Homo sapiens chromosome 18, clone RP11-108P20, co... 38 3.2
12gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complet... 38 3.2
13gb|BC109594.1| Bos taurus cDNA clone IMAGE:8049591 38 3.2
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.2
15gb|AY240020.1| Bos taurus carbonic anhydrase II mRNA, complete cds 38 3.2
16gb|AC004962.1|AC004962 Homo sapiens PAC clone RP5-1099N7 from 1,... 38 3.2
17emb|AL163302.2|HS21C102 Homo sapiens chromosome 21 segment HS21C102 38 3.2
18dbj|AK066501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 3.2
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 3.2
20emb|BX322561.1|HSE12310 Homo sapiens chromosome 21 from PAC RPCI... 38 3.2
21dbj|AB209069.1| Homo sapiens mRNA for solute carrier family 19 m... 38 3.2

>emb|CT573044.1| Pig DNA sequence from clone XX-BE156J14 on chromosome 14, complete
             sequence
          Length = 184551

 Score = 40.1 bits (20), Expect = 0.81
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    cagcctccttcctactcctc 41
             ||||||||||||||||||||
Sbjct: 28263 cagcctccttcctactcctc 28244



to top

>gb|DQ214471.1| Taeniopygia guttata clone 0063P0008E11 downregulated in renal cell
           carcinoma-like mRNA, complete sequence
          Length = 908

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 13  gcggccgggcagcctcctt 31
           |||||||||||||||||||
Sbjct: 306 gcggccgggcagcctcctt 324



to top

>ref|NM_178572.2| Bos taurus carbonic anhydrase II (CA2), mRNA
          Length = 1481

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 17  ccgggcagcctccttccta 35
           |||||||||||||||||||
Sbjct: 587 ccgggcagcctccttccta 605



to top

>gb|AC116595.4| Mus musculus BAC clone RP24-127G9 from chromosome 18, complete sequence
          Length = 158788

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 16    gccgggcagcctccttcctactcctcg 42
             ||||||||||||||| ||| |||||||
Sbjct: 46135 gccgggcagcctcctccctcctcctcg 46161



to top

>ref|XM_653100.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0588.2), mRNA
          Length = 1467

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 29  cttcctactcctcgagactatcc 51
           |||||| ||||||||||||||||
Sbjct: 463 cttccttctcctcgagactatcc 441



to top

>gb|AY484970.1|AY484967S4 Homo sapiens type XVIII collagen gene, exons 21 through 33
          Length = 9810

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 15   ggccgggcagcctccttcc 33
            |||||||||||||||||||
Sbjct: 3641 ggccgggcagcctccttcc 3659



to top

>emb|AL139244.21| Human DNA sequence from clone RP5-1043G4 on chromosome 1p32.1-33
             Contains the 3' end of a novel gene (FLJ46354), the TTC4
             gene for tetratricopeptide repeat domain 4, a novel gene
             (DKFZp727A071), the 3' end of a novel gene (FLJ20619) and
             three CpG islands, complete sequence
          Length = 129156

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    cagcctccttcctactcct 40
             |||||||||||||||||||
Sbjct: 86978 cagcctccttcctactcct 86996



to top

>gb|AC153155.6| Mus musculus BAC clone RP23-25J23 from chromosome 18, complete sequence
          Length = 227880

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 16    gccgggcagcctccttcctactcctcg 42
             ||||||||||||||| ||| |||||||
Sbjct: 12677 gccgggcagcctcctccctcctcctcg 12651



to top

>emb|AL954258.2| Pan troglodytes chromosome 22 clone PTB-146D01 map 22q22.3, complete
              sequence
          Length = 185080

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     ggccgggcagcctccttcc 33
              |||||||||||||||||||
Sbjct: 115257 ggccgggcagcctccttcc 115275



to top

>gb|BC103260.1| Bos taurus carbonic anhydrase II, mRNA (cDNA clone MGC:128557
           IMAGE:7985245), complete cds
          Length = 1522

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 17  ccgggcagcctccttccta 35
           |||||||||||||||||||
Sbjct: 641 ccgggcagcctccttccta 659



to top

>gb|AC104365.4| Homo sapiens chromosome 18, clone RP11-108P20, complete sequence
          Length = 157871

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    ggccgggcagcctccttcc 33
             |||||||||||||||||||
Sbjct: 55093 ggccgggcagcctccttcc 55075



to top

>gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complete sequence
          Length = 222605

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 15     ggccgggcagcctccttcctact 37
              |||||||||||| ||||||||||
Sbjct: 112144 ggccgggcagccaccttcctact 112166



to top

>gb|BC109594.1| Bos taurus cDNA clone IMAGE:8049591
          Length = 957

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 48  atcctctgctccgcaaccttcct 70
           |||||||||||| ||||||||||
Sbjct: 309 atcctctgctccacaaccttcct 287



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 13       gcggccgggcagcctcctt 31
                |||||||||||||||||||
Sbjct: 27847641 gcggccgggcagcctcctt 27847659



to top

>gb|AY240020.1| Bos taurus carbonic anhydrase II mRNA, complete cds
          Length = 1481

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 17  ccgggcagcctccttccta 35
           |||||||||||||||||||
Sbjct: 587 ccgggcagcctccttccta 605



to top

>gb|AC004962.1|AC004962 Homo sapiens PAC clone RP5-1099N7 from 1, complete sequence
          Length = 143749

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    cagcctccttcctactcct 40
             |||||||||||||||||||
Sbjct: 89779 cagcctccttcctactcct 89761



to top

>emb|AL163302.2|HS21C102 Homo sapiens chromosome 21 segment HS21C102
          Length = 340000

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     ggccgggcagcctccttcc 33
              |||||||||||||||||||
Sbjct: 192351 ggccgggcagcctccttcc 192369



to top

>dbj|AK066501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074D11, full
           insert sequence
          Length = 1094

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  gcggccgggcagcctcctt 31
           |||||||||||||||||||
Sbjct: 151 gcggccgggcagcctcctt 133



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 13       gcggccgggcagcctcctt 31
                |||||||||||||||||||
Sbjct: 27871629 gcggccgggcagcctcctt 27871647



to top

>emb|BX322561.1|HSE12310 Homo sapiens chromosome 21 from PAC RPCI-1 RP1-310E12 map 21q22.3
             region D21S171-LA161, complete sequence
          Length = 131563

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    ggccgggcagcctccttcc 33
             |||||||||||||||||||
Sbjct: 52663 ggccgggcagcctccttcc 52681



to top

>dbj|AB209069.1| Homo sapiens mRNA for solute carrier family 19 member 1 isoform b
            variant protein
          Length = 3567

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 15   ggccgggcagcctccttcc 33
            |||||||||||||||||||
Sbjct: 3558 ggccgggcagcctccttcc 3540


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 442,736
Number of Sequences: 3902068
Number of extensions: 442736
Number of successful extensions: 30807
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30782
Number of HSP's gapped (non-prelim): 25
length of query: 78
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 57
effective length of database: 17,151,101,840
effective search space: 977612804880
effective search space used: 977612804880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top