ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart24a05 |
|---|---|
| Clone Library Name | barley_pub |
>ERF2_KLULA (Q9HGI8) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 700 Score = 35.0 bits (79), Expect = 0.14 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 8/81 (9%) Frame = +1 Query: 214 YQAQQRVQQLPDNSYPGRDPGQAAGENQYTAQKARQSQWD--RGG------PNIPNQISP 369 YQA Q Q P +Y G +P QA G Y A+Q ++ +GG N N+ S Sbjct: 46 YQAYQAYGQQPQGAYQGYNPQQAQGYQPYQGYNAQQQGYNAQQGGHNNNYNKNYNNKNSY 105 Query: 370 YAYNEGQNAEGKRSFYDGQPS 432 YN+ Q +G + + QP+ Sbjct: 106 NNYNK-QGYQGAQGYNAQQPT 125
>TSHR_RAT (P21463) Thyrotropin receptor precursor (TSH-R)| (Thyroid-stimulating hormone receptor) Length = 764 Score = 33.1 bits (74), Expect = 0.54 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Frame = -3 Query: 544 FQMYEEDY--SHRALLQSYRYESGPSIPFLVAFLDQPSDQMVVHHKRIVYPQH-----FD 386 +Q YEE +H Q+ +++ GPS F ++ D+++ + + PQ FD Sbjct: 323 YQEYEEGLGDNHVGYKQNSKFQEGPSNSHYYVFFEEQEDEIIGFGQELKNPQEETLQAFD 382 Query: 385 PHYMHMVKSDS 353 HY + V D+ Sbjct: 383 SHYDYTVCGDN 393
>PCDG6_PANTR (Q5DRB4) Protocadherin gamma A6 precursor (PCDH-gamma-A6)| Length = 932 Score = 30.8 bits (68), Expect = 2.7 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Frame = +1 Query: 172 DPNINSMASSQLHHYQAQQRVQQLPDNSYPG--RDPGQAAGENQYTAQKARQSQ-W---- 330 DP+++ A Q+ + A+ +Q P +SY D G + ++ R Q W Sbjct: 478 DPDVDQNA--QVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTAS 535 Query: 331 DRGGPNIPNQISPYAYNEGQNAEGKRSFYDGQPSDLKVGLEKQPR 465 D G P + + +S + QN Y P+D G+E PR Sbjct: 536 DSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPR 580
>PCDG6_HUMAN (Q9Y5G7) Protocadherin gamma A6 precursor (PCDH-gamma-A6)| Length = 932 Score = 30.8 bits (68), Expect = 2.7 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%) Frame = +1 Query: 172 DPNINSMASSQLHHYQAQQRVQQLPDNSYPG--RDPGQAAGENQYTAQKARQSQ-W---- 330 DP+++ A Q+ + A+ +Q P +SY D G + ++ R Q W Sbjct: 478 DPDVDQNA--QVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTAS 535 Query: 331 DRGGPNIPNQISPYAYNEGQNAEGKRSFYDGQPSDLKVGLEKQPR 465 D G P + + +S + QN Y P+D G+E PR Sbjct: 536 DSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPR 580
>PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin)| Length = 3336 Score = 30.4 bits (67), Expect = 3.5 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +1 Query: 442 VGLEKQPRKELRDQTHTDKIEARHDDYNLPRTFESLEQS 558 VGLE++P K +D H D++E +LPR LE+S Sbjct: 564 VGLEEKPEKGRKD--HVDELEPERHKESLPRFQAELEES 600
>YMJA_CAEEL (P34486) Hypothetical protein F59B2.11 precursor| Length = 590 Score = 30.0 bits (66), Expect = 4.6 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Frame = +1 Query: 244 PDNSYPGRDPGQAAG-----ENQYTAQKARQSQWDRGGPNIPNQISPYAYNEGQNAEG 402 P NS G D +G NQY ++ + ++DR G N+I+ G N EG Sbjct: 127 PQNSESGEDSDNRSGGRRGQSNQYEDEETNEERYDRNG----NRITRGGRTRGNNREG 180
>RNFC_SALTY (Q8ZPM2) Electron transport complex protein rnfC| Length = 735 Score = 30.0 bits (66), Expect = 4.6 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 217 QAQQRVQQLPDNSYPGRDPGQAAGENQYTAQKARQSQWDRG 339 +A+Q + D++ PG DP +AA E KAR+ + G Sbjct: 536 RAKQAAHPMADSAIPGDDPSKAAVEAAIARAKARKQEQQAG 576
>MCM1_YEAST (P11746) Pheromone receptor transcription factor (GRM/PRTF protein)| Length = 286 Score = 29.6 bits (65), Expect = 6.0 Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 28/113 (24%) Frame = +1 Query: 172 DPNINSMASSQLHH---YQAQQRVQQLPD--------NSYPGRDPG-----------QAA 285 +PN NSM Q HH Q QQ+ QQ P + +P G Q Sbjct: 171 NPNQNSMIQQQQHHTQNSQPQQQQQQQPQQQMSQQQMSQHPRPQQGIPHPQQSQPQQQQQ 230 Query: 286 GENQYTAQKARQSQWDRGGPNIPNQ------ISPYAYNEGQNAEGKRSFYDGQ 426 + Q Q+ +Q Q G + P+Q SPY N QNA ++ F + Q Sbjct: 231 QQQQLQQQQQQQQQQPLTGIHQPHQQAFANAASPY-LNAEQNAAYQQYFQEPQ 282
>RAG8_KLULA (P40230) Casein kinase I homolog RAG8 (EC 2.7.11.1)| Length = 536 Score = 29.6 bits (65), Expect = 6.0 Identities = 22/83 (26%), Positives = 38/83 (45%) Frame = +1 Query: 196 SSQLHHYQAQQRVQQLPDNSYPGRDPGQAAGENQYTAQKARQSQWDRGGPNIPNQISPYA 375 S Q + QQR+ + +Y + + A + Q T QKA++S PN N S Sbjct: 444 SQQQYQQHTQQRLDPMSYEAYKQQVQQRYAQQPQPTQQKAQKS------PN--NDTSQQQ 495 Query: 376 YNEGQNAEGKRSFYDGQPSDLKV 444 +++ + + + F QP + KV Sbjct: 496 FSQNRQQQPQYQFQQNQPQNGKV 518
>SMG1_CAEBR (Q61CW2) Serine/threonine-protein kinase smg-1 (EC 2.7.11.1)| (Suppressor with morphogenetic effect on genitalia protein 1) Length = 2319 Score = 29.6 bits (65), Expect = 6.0 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = +1 Query: 346 NIPNQISPYA-YNEGQNAEGKRSFYDGQPSDLKVGLEKQPRKELRDQTHTDKIEARHDDY 522 N PN ISP+A Y GQ A+ + + V LEKQ RK + D + + ++ Y Sbjct: 1351 NFPN-ISPFALYQFGQTAQENEELWRSLDATSLVNLEKQVRKIVPDAMRASVLLSPNNPY 1409 Query: 523 NL 528 L Sbjct: 1410 LL 1411
>SPEE_BACHD (Q9K6B8) Spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 275 Score = 29.6 bits (65), Expect = 6.0 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Frame = -3 Query: 388 DPHYMHMVKSDSGYSVHPCPIGSVSPSGRYTGSPQQLAQDLFQGNYYQGVVEPFAEPG-S 212 D ++H+ K++S Y V + S P G A LF+ +YQG+ + E G Sbjct: 136 DDGFLHIAKAESAYDV--IMVDSTEPVGP--------AVKLFEKGFYQGIAKALKEDGIF 185 Query: 211 DATGKKPW 188 A PW Sbjct: 186 VAQTDNPW 193
>PCDG7_PANTR (Q5DRB3) Protocadherin gamma A7 precursor (PCDH-gamma-A7)| Length = 932 Score = 29.6 bits (65), Expect = 6.0 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 7/101 (6%) Frame = +1 Query: 184 NSMASSQLHHYQAQQRVQQLPDNSYPG--RDPGQAAGENQYTAQKARQSQW-----DRGG 342 +S ++Q+ + A+ +Q P +SY D G + ++ R+ Q D G Sbjct: 480 DSEDNAQITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGD 539 Query: 343 PNIPNQISPYAYNEGQNAEGKRSFYDGQPSDLKVGLEKQPR 465 P + + +S + QN Y P+D G+E PR Sbjct: 540 PPLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPR 580
>PCDG7_HUMAN (Q9Y5G6) Protocadherin gamma A7 precursor (PCDH-gamma-A7)| Length = 932 Score = 29.6 bits (65), Expect = 6.0 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 7/101 (6%) Frame = +1 Query: 184 NSMASSQLHHYQAQQRVQQLPDNSYPG--RDPGQAAGENQYTAQKARQSQW-----DRGG 342 +S ++Q+ + A+ +Q P +SY D G + ++ R+ Q D G Sbjct: 480 DSEDNAQITYSLAEDTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGD 539 Query: 343 PNIPNQISPYAYNEGQNAEGKRSFYDGQPSDLKVGLEKQPR 465 P + + +S + QN Y P+D G+E PR Sbjct: 540 PPLSSNMSLSLFVLDQNDNPPEILYPALPTDGSTGMELAPR 580
>PFTA_RAT (Q04631) Protein farnesyltransferase/geranylgeranyltransferase type| I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransfer Length = 377 Score = 29.3 bits (64), Expect = 7.8 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -3 Query: 550 LNFQMYEEDYSHRALLQSYRYESGPSIPFLVAFLD-QPSDQMVVHHKRIVYPQHFDP 383 LN Y + R LL+S + + + +++A ++ QP + V HH+R++ DP Sbjct: 126 LNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDP 182
>PAN1_YEAST (P32521) Protein PAN1| Length = 1480 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/51 (27%), Positives = 26/51 (50%) Frame = +1 Query: 184 NSMASSQLHHYQAQQRVQQLPDNSYPGRDPGQAAGENQYTAQKARQSQWDR 336 N + + Q QQ+ QQ P+ YP + GQ++ + Q Q +Q +++ Sbjct: 3 NPYQQQGMGYQQQQQQQQQQPNGFYPQQQQGQSSNQPQGQPQPQQQMAFNQ 53
>SSXT_HUMAN (Q15532) SSXT protein (Synovial sarcoma, translocated to X| chromosome) (SYT protein) Length = 418 Score = 29.3 bits (64), Expect = 7.8 Identities = 28/87 (32%), Positives = 31/87 (35%), Gaps = 18/87 (20%) Frame = +1 Query: 184 NSMASSQLHHYQAQQRVQQLP--DNSYPGRD--PGQAAGEN--------QYTAQKARQSQ 327 NS Q YQ Q P YPG+ PGQ G QY Q Q Sbjct: 326 NSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQ 385 Query: 328 WDRG------GPNIPNQISPYAYNEGQ 390 G GP P Q PY Y++GQ Sbjct: 386 QYGGYRPTQPGPPQPPQQRPYGYDQGQ 412
>EOMES_MOUSE (O54839) Eomesodermin homolog| Length = 688 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 337 PCPIGSVSPSGRYTGSPQQLAQDLFQGNYYQGVVEPFAEPG 215 PC GS P+G G+P + D G+ + G A+PG Sbjct: 70 PCQAGSAEPAGAGAGAPAAMLSDADAGDTF-GSTSAVAKPG 109
>PCDG2_HUMAN (Q9Y5H1) Protocadherin gamma A2 precursor (PCDH-gamma-A2)| Length = 932 Score = 29.3 bits (64), Expect = 7.8 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Frame = +1 Query: 172 DPNINSMASSQLHHYQAQQRVQQLPDNSYPG--RDPGQAAGENQYTAQKARQSQ-W---- 330 DP+ N A + + A+ VQ P +SY D G + ++ R Q W Sbjct: 478 DPDSNDNA--HVTYSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIAR 535 Query: 331 DRGGPNIPNQISPYAYNEGQNAEGKRSFYDGQPSDLKVGLEKQPR 465 D G P + + +S + QN Y P+D G+E PR Sbjct: 536 DSGNPPLSSNVSLSLFVLDQNDNAPEILYPAFPTDGSTGVELAPR 580
>PCDGA_HUMAN (Q9Y5H3) Protocadherin gamma A10 precursor (PCDH-gamma-A10)| Length = 936 Score = 29.3 bits (64), Expect = 7.8 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 7/101 (6%) Frame = +1 Query: 184 NSMASSQLHHYQAQQRVQQLPDNSYPG--RDPGQAAGENQYTAQKARQSQW-----DRGG 342 +S ++Q+ + A+ +Q +P +SY D G + ++ + Q D G Sbjct: 484 DSKENAQIIYSLAEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGD 543 Query: 343 PNIPNQISPYAYNEGQNAEGKRSFYDGQPSDLKVGLEKQPR 465 P + + +S + QN Y P+D G+E PR Sbjct: 544 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPR 584 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.308 0.128 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,241,956 Number of Sequences: 219361 Number of extensions: 1491154 Number of successful extensions: 3845 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3756 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3841 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits)
