ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart24a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TWIST_BRABE (O96642) Twist-related protein (BBtwist) 29 9.0

>TWIST_BRABE (O96642) Twist-related protein (BBtwist)|
          Length = 196

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 435 VAKPDPDARPDTDAEQKPFHGEEEAAKAWKVEMLRRF 545
           + KPDPDA P  D        EE+ +++ + E  RR+
Sbjct: 19  LVKPDPDASPLADHSSSGPEAEEDPSRSKRYERKRRY 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,449,341
Number of Sequences: 219361
Number of extensions: 922701
Number of successful extensions: 3561
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3555
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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