ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart24a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY785859.1| Hordeum vulgare subsp. vulgare cultivar Morex HvC... 52 2e-04
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.58
3dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.58
4dbj|AB168734.1| Macaca fascicularis testis cDNA, clone: QtsA-144... 38 2.3
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 36 9.1
6dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic D... 36 9.1

>gb|AY785859.1| Hordeum vulgare subsp. vulgare cultivar Morex HvCBF6 (CBF6) mRNA,
          complete cds
          Length = 1036

 Score = 52.0 bits (26), Expect = 2e-04
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 37 ctcgactcgagcaaccataacaagga 62
          ||||||||||||||||||||||||||
Sbjct: 1  ctcgactcgagcaaccataacaagga 26



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 0.58
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 11       tcgcacagtaaaacctccac 30
                ||||||||||||||||||||
Sbjct: 25988359 tcgcacagtaaaacctccac 25988378



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>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0707D10
          Length = 172003

 Score = 40.1 bits (20), Expect = 0.58
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    tcgcacagtaaaacctccac 30
             ||||||||||||||||||||
Sbjct: 84426 tcgcacagtaaaacctccac 84445



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>dbj|AB168734.1| Macaca fascicularis testis cDNA, clone: QtsA-14462, similar to
           human testicular soluble adenylyl cyclase (SAC), mRNA,
           RefSeq: NM_018417.2
          Length = 2379

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 16  cagtaaaacctccacttca 34
           |||||||||||||||||||
Sbjct: 161 cagtaaaacctccacttca 143



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 35      cactcgactcgagcaacc 52
               ||||||||||||||||||
Sbjct: 2914373 cactcgactcgagcaacc 2914390



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>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0050B07
          Length = 142134

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 35    cactcgactcgagcaacc 52
             ||||||||||||||||||
Sbjct: 84660 cactcgactcgagcaacc 84677


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 382,682
Number of Sequences: 3902068
Number of extensions: 382682
Number of successful extensions: 19062
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19048
Number of HSP's gapped (non-prelim): 14
length of query: 62
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 41
effective length of database: 17,151,101,840
effective search space: 703195175440
effective search space used: 703195175440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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