ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart23h06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full insert mRNA sequence Length = 1805 Score = 805 bits (406), Expect = 0.0 Identities = 501/533 (93%) Strand = Plus / Plus Query: 22 caagctagctagcaaagatggccatggctaggagctccagcctagtgctcgtcgccttcg 81 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 14 caagctagctagcaaagatggccatggccaggagctccagcctagtgctcgtcgccttcg 73 Query: 82 ccctgctctgctgctacgcctcctccgtcgcctcccagggtaactcgtccgatgcattcc 141 || |||||||||||||||||||| ||||| ||||||||||||| ||||| |||| |||| Sbjct: 74 ccttgctctgctgctacgcctccaccgtctcctcccagggtaattcgtctgatggtttcc 133 Query: 142 tctcgtgcctgtcggcgagcatcccccgccagctcgtgttcacgccgagctcgccgtcgt 201 | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 134 tgtcgtgtctgacggcgagcatcccccgccagctcgtgttcacgccgagctcgccctcgt 193 Query: 202 tcacgccgctgctcaagtcctccatccggaaccccaagttcttcaccccgagcaccgtga 261 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 194 tcacgccgctgctcaagtcctccatccggaaccccaagttcttcacgcccagcaccgtga 253 Query: 262 ggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgctctgcg 321 ||||||| || ||| ||||||| |||||||| || |||||||||||||||||||| |||| Sbjct: 254 ggccgctgtatatcatcacgccgacgaacgcctcccacgtgcaggccgccgtgctgtgcg 313 Query: 322 gacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgagggcctgt 381 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 gccgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgagggcctgt 373 Query: 382 cgtaccggtccgtgcgggccgaggcgttcgcggtgctcgacctgtcgagcctccgctccg 441 |||||||||||||||| |||||| ||||||| ||||| ||||||||||||||||| ||| Sbjct: 374 cgtaccggtccgtgcgcgccgagtcgttcgccgtgcttgacctgtcgagcctccgtgccg 433 Query: 442 tgcgggtcgacgcgcaggcggcgaccgcgtgggtggactccggagcccagctcggcgagc 501 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 434 tgcgggtcgacgcgcaggcggcgaccgcgtgggtggactccggcgcccagctcggcgagc 493 Query: 502 tctattatgcgatcgggaaggccagcagcgtgctcgggttccccggcggnctg 554 |||||||||||||||||||||| ||| |||||||||||||||||||||| ||| Sbjct: 494 tctattatgcgatcgggaaggcgagcggcgtgctcgggttccccggcggcctg 546
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 192 bits (97), Expect = 8e-46 Identities = 201/233 (86%), Gaps = 2/233 (0%) Strand = Plus / Minus Query: 253 gcaccgtgaggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccg 312 |||||||| ||||||||| | |||| | |||||| |||||||||||||| |||||||||| Sbjct: 20461918 gcaccgtgcggccgctctgcgtcgtgaagcccaccaacgcgtcgcacgtccaggccgccg 20461859 Query: 313 tgctctgcggacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacg 372 |||| ||||| ||||| |||| ||||| |||||||||||||||||||||||||||||| Sbjct: 20461858 tgctgtgcggccgccgccacggggtgcgcctccgcgtgcgcagcggcgggcacgactacg 20461799 Query: 373 agggcctgtcgtaccggtccgtgcgggccgaggcgttcgcggtgctcgacctgtcgagcc 432 ||||||| ||||||||||||||||| |||| |||||| ||| ||||||| | ||| Sbjct: 20461798 agggcctctcgtaccggtccgtgcgccaggaggtgttcgccgtggtcgacctcgccggcc 20461739 Query: 433 tccgctccgtgcgggtcgacgcgcag-gcggcgaccgcgtgggtggactccgg 484 ||||||||||||| ||| || ||| | ||||| |||||||||||||||||||| Sbjct: 20461738 tccgctccgtgcgcgtcaac-cgccgcgcggccaccgcgtgggtggactccgg 20461687 Score = 168 bits (85), Expect = 1e-38 Identities = 278/339 (82%), Gaps = 5/339 (1%) Strand = Plus / Minus Query: 147 tgcctgtcggcgagcatcccccgccagctcgtgttcacgccgagctcgccgtcgttcacg 206 ||||| ||||||||||| ||| |||||||| ||| ||||| |||||||||||||| |||| Sbjct: 20486493 tgcctctcggcgagcatacccagccagctcctgtacacgcagagctcgccgtcgtacacg 20486434 Query: 207 ccgctgctcaagtcctccatccggaaccccaagttcttcaccccgagcaccgtgaggccg 266 || |||| | || |||||||||||| |||||| | || || |||| | ||||| Sbjct: 20486433 tcggtgctggacgccggcatccggaaccctaagttcctgac---gaacaccacgcggccg 20486377 Query: 267 ctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgctctgcggacgc 326 ||| ||| ||||||| |||||||| || ||||| |||||||||||||||||||| ||| Sbjct: 20486376 gtctggatcatcacgccgacgaacgcctcccacgtccaggccgccgtgctctgcggccgc 20486317 Query: 327 cggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 386 |||| ||| | ||| ||||| | ||||||||||||||||||||||||||||| |||||| Sbjct: 20486316 cggaacggcgtccgcctccgcatccgcagcggcgggcacgactacgagggcctctcgtac 20486257 Query: 387 cggtccgtgcgggccgaggcgttcgcggtgctcgacct-gtcgagcctccgctccgtgcg 445 |||| | |||| | ||| ||||||| ||||||||||| ||| | | ||||| |||| || Sbjct: 20486256 aggtcggagcggccggagacgttcgccgtgctcgacctcgtc-aacatccgcgccgtccg 20486198 Query: 446 ggtcgacgcgcaggcggcgaccgcgtgggtggactccgg 484 ||||||||| | | || |||||||||||||||||||| Sbjct: 20486197 cgtcgacgcggcgtccgccaccgcgtgggtggactccgg 20486159 Score = 143 bits (72), Expect = 7e-31 Identities = 152/176 (86%), Gaps = 2/176 (1%) Strand = Plus / Minus Query: 219 tcctccatccggaaccccaagttcttcaccccgagcaccgtgaggccgctctacatcgtc 278 ||||||||||||||||||| ||| |||| | ||| | ||||||||||| ||||||| Sbjct: 20438138 tcctccatccggaaccccatgtttttcaacaacgccacggcgaggccgctctgcatcgtc 20438079 Query: 279 acgcccacgaacgcgtcgcacgtgcaggccgccgtgctctgcggacgc-cggagcgggct 337 ||||| | ||||||||||||| |||||||||||||||||||| ||| | ||| ||| | Sbjct: 20438078 acgccggccgacgcgtcgcacgtccaggccgccgtgctctgcggccgcgccgaggggg-t 20438020 Query: 338 gcgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtccg 393 |||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 20438019 gcgcctccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccggtccg 20437964 Score = 89.7 bits (45), Expect = 9e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 339 cgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtc 391 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 20421528 cgcatccgcgtgcgcagcggcggccacgactacgagggcctctcgtaccggtc 20421476 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||| ||||||||||||||||||||||||||| || |||||||| Sbjct: 20465968 tccgcgcgcgcagcggcgggcacgactacgaggggctctcgtaccg 20465923 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcct 379 |||||| |||||||||||||||||||||||||||||| Sbjct: 20389511 tccgcgcgcgcagcggcgggcacgactacgagggcct 20389475 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 351 cgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||||||||||| ||||||||||||||||| ||||| Sbjct: 20404768 cgcagcggcgggcatgactacgagggcctgtcctaccg 20404731 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Minus Query: 468 gcgtgggtggactccggagcccagctcggcgagctcta 505 ||||||||||| ||||| || ||| ||||||||||||| Sbjct: 20421399 gcgtgggtggagtccggcgcgcagatcggcgagctcta 20421362 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Minus Query: 289 acgcgtcgcacgtgcaggccgccgtgctctgcgg 322 |||| |||||||| ||||||||||||| |||||| Sbjct: 20404830 acgcctcgcacgtccaggccgccgtgcgctgcgg 20404797
>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0659D09 Length = 168253 Score = 192 bits (97), Expect = 8e-46 Identities = 201/233 (86%), Gaps = 2/233 (0%) Strand = Plus / Minus Query: 253 gcaccgtgaggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccg 312 |||||||| ||||||||| | |||| | |||||| |||||||||||||| |||||||||| Sbjct: 34213 gcaccgtgcggccgctctgcgtcgtgaagcccaccaacgcgtcgcacgtccaggccgccg 34154 Query: 313 tgctctgcggacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacg 372 |||| ||||| ||||| |||| ||||| |||||||||||||||||||||||||||||| Sbjct: 34153 tgctgtgcggccgccgccacggggtgcgcctccgcgtgcgcagcggcgggcacgactacg 34094 Query: 373 agggcctgtcgtaccggtccgtgcgggccgaggcgttcgcggtgctcgacctgtcgagcc 432 ||||||| ||||||||||||||||| |||| |||||| ||| ||||||| | ||| Sbjct: 34093 agggcctctcgtaccggtccgtgcgccaggaggtgttcgccgtggtcgacctcgccggcc 34034 Query: 433 tccgctccgtgcgggtcgacgcgcag-gcggcgaccgcgtgggtggactccgg 484 ||||||||||||| ||| || ||| | ||||| |||||||||||||||||||| Sbjct: 34033 tccgctccgtgcgcgtcaac-cgccgcgcggccaccgcgtgggtggactccgg 33982 Score = 168 bits (85), Expect = 1e-38 Identities = 278/339 (82%), Gaps = 5/339 (1%) Strand = Plus / Minus Query: 147 tgcctgtcggcgagcatcccccgccagctcgtgttcacgccgagctcgccgtcgttcacg 206 ||||| ||||||||||| ||| |||||||| ||| ||||| |||||||||||||| |||| Sbjct: 58788 tgcctctcggcgagcatacccagccagctcctgtacacgcagagctcgccgtcgtacacg 58729 Query: 207 ccgctgctcaagtcctccatccggaaccccaagttcttcaccccgagcaccgtgaggccg 266 || |||| | || |||||||||||| |||||| | || || |||| | ||||| Sbjct: 58728 tcggtgctggacgccggcatccggaaccctaagttcctgac---gaacaccacgcggccg 58672 Query: 267 ctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgctctgcggacgc 326 ||| ||| ||||||| |||||||| || ||||| |||||||||||||||||||| ||| Sbjct: 58671 gtctggatcatcacgccgacgaacgcctcccacgtccaggccgccgtgctctgcggccgc 58612 Query: 327 cggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 386 |||| ||| | ||| ||||| | ||||||||||||||||||||||||||||| |||||| Sbjct: 58611 cggaacggcgtccgcctccgcatccgcagcggcgggcacgactacgagggcctctcgtac 58552 Query: 387 cggtccgtgcgggccgaggcgttcgcggtgctcgacct-gtcgagcctccgctccgtgcg 445 |||| | |||| | ||| ||||||| ||||||||||| ||| | | ||||| |||| || Sbjct: 58551 aggtcggagcggccggagacgttcgccgtgctcgacctcgtc-aacatccgcgccgtccg 58493 Query: 446 ggtcgacgcgcaggcggcgaccgcgtgggtggactccgg 484 ||||||||| | | || |||||||||||||||||||| Sbjct: 58492 cgtcgacgcggcgtccgccaccgcgtgggtggactccgg 58454 Score = 143 bits (72), Expect = 7e-31 Identities = 152/176 (86%), Gaps = 2/176 (1%) Strand = Plus / Minus Query: 219 tcctccatccggaaccccaagttcttcaccccgagcaccgtgaggccgctctacatcgtc 278 ||||||||||||||||||| ||| |||| | ||| | ||||||||||| ||||||| Sbjct: 10433 tcctccatccggaaccccatgtttttcaacaacgccacggcgaggccgctctgcatcgtc 10374 Query: 279 acgcccacgaacgcgtcgcacgtgcaggccgccgtgctctgcggacgc-cggagcgggct 337 ||||| | ||||||||||||| |||||||||||||||||||| ||| | ||| ||| | Sbjct: 10373 acgccggccgacgcgtcgcacgtccaggccgccgtgctctgcggccgcgccgaggggg-t 10315 Query: 338 gcgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtccg 393 |||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 10314 gcgcctccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccggtccg 10259 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||| ||||||||||||||||||||||||||| || |||||||| Sbjct: 38263 tccgcgcgcgcagcggcgggcacgactacgaggggctctcgtaccg 38218
>dbj|AK073505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046H14, full insert sequence Length = 1813 Score = 192 bits (97), Expect = 8e-46 Identities = 201/233 (86%), Gaps = 2/233 (0%) Strand = Plus / Plus Query: 253 gcaccgtgaggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccg 312 |||||||| ||||||||| | |||| | |||||| |||||||||||||| |||||||||| Sbjct: 269 gcaccgtgcggccgctctgcgtcgtgaagcccaccaacgcgtcgcacgtccaggccgccg 328 Query: 313 tgctctgcggacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacg 372 |||| ||||| ||||| |||| ||||| |||||||||||||||||||||||||||||| Sbjct: 329 tgctgtgcggccgccgccacggggtgcgcctccgcgtgcgcagcggcgggcacgactacg 388 Query: 373 agggcctgtcgtaccggtccgtgcgggccgaggcgttcgcggtgctcgacctgtcgagcc 432 ||||||| ||||||||||||||||| |||| |||||| ||| ||||||| | ||| Sbjct: 389 agggcctctcgtaccggtccgtgcgccaggaggtgttcgccgtggtcgacctcgccggcc 448 Query: 433 tccgctccgtgcgggtcgacgcgcag-gcggcgaccgcgtgggtggactccgg 484 ||||||||||||| ||| || ||| | ||||| |||||||||||||||||||| Sbjct: 449 tccgctccgtgcgcgtcaac-cgccgcgcggccaccgcgtgggtggactccgg 500
>dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full insert sequence Length = 1972 Score = 168 bits (85), Expect = 1e-38 Identities = 278/339 (82%), Gaps = 5/339 (1%) Strand = Plus / Plus Query: 147 tgcctgtcggcgagcatcccccgccagctcgtgttcacgccgagctcgccgtcgttcacg 206 ||||| ||||||||||| ||| |||||||| ||| ||||| |||||||||||||| |||| Sbjct: 179 tgcctctcggcgagcatacccagccagctcctgtacacgcagagctcgccgtcgtacacg 238 Query: 207 ccgctgctcaagtcctccatccggaaccccaagttcttcaccccgagcaccgtgaggccg 266 || |||| | || |||||||||||| |||||| | || || |||| | ||||| Sbjct: 239 tcggtgctggacgccggcatccggaaccctaagttcctgac---gaacaccacgcggccg 295 Query: 267 ctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgctctgcggacgc 326 ||| ||| ||||||| |||||||| || ||||| |||||||||||||||||||| ||| Sbjct: 296 gtctggatcatcacgccgacgaacgcctcccacgtccaggccgccgtgctctgcggccgc 355 Query: 327 cggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 386 |||| ||| | ||| ||||| | ||||||||||||||||||||||||||||| |||||| Sbjct: 356 cggaacggcgtccgcctccgcatccgcagcggcgggcacgactacgagggcctctcgtac 415 Query: 387 cggtccgtgcgggccgaggcgttcgcggtgctcgacct-gtcgagcctccgctccgtgcg 445 |||| | |||| | ||| ||||||| ||||||||||| ||| | | ||||| |||| || Sbjct: 416 aggtcggagcggccggagacgttcgccgtgctcgacctcgtc-aacatccgcgccgtccg 474 Query: 446 ggtcgacgcgcaggcggcgaccgcgtgggtggactccgg 484 ||||||||| | | || |||||||||||||||||||| Sbjct: 475 cgtcgacgcggcgtccgccaccgcgtgggtggactccgg 513
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 155 bits (78), Expect = 2e-34 Identities = 219/264 (82%), Gaps = 4/264 (1%) Strand = Plus / Minus Query: 289 acgcgtcgcacgtgcaggccgccgtgctctgcggacgccggagcgggctgcgcatccgcg 348 ||||||| ||||| ||||||||||||| ||||| | ||||||||| | ||| |||||| Sbjct: 74481 acgcgtcccacgtccaggccgccgtgcggtgcggccaccggagcggcgtccgcctccgcg 74422 Query: 349 tgcgcagcggcgggcacgactacgagggcctgtcgtaccggtccgtgcgggccgaggcgt 408 ||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| ||| Sbjct: 74421 tgcgcagcggcgggcacgactacgagggcctctcgtaccgcgccgtgcgcgccgagacgt 74362 Query: 409 tcgcggtgctcgacctgtcgagcctccgctccgtgcgggtcgacgcgcaggcg--gcgac 466 |||| ||||||||||| | | |||||| ||||||| ||| ||||| |||| || || Sbjct: 74361 tcgccgtgctcgacctcgccgggctccgcgccgtgcgcgtc--cgcgccggcgacgctac 74304 Query: 467 cgcgtgggtggactccggagcccagctcggcgagctctattatgcgatcgggaaggccag 526 ||||||||||||||||| ||| |||||| |||||||| || || |||||| ||||| Sbjct: 74303 ggcgtgggtggactccggcgccacgctcggggagctctactacgccgtcgggacggccaa 74244 Query: 527 cagcgtgctcgggttccccggcgg 550 | || | ||| |||||||||||| Sbjct: 74243 ccccgggttcgcgttccccggcgg 74220
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 155 bits (78), Expect = 2e-34 Identities = 219/264 (82%), Gaps = 4/264 (1%) Strand = Plus / Minus Query: 289 acgcgtcgcacgtgcaggccgccgtgctctgcggacgccggagcgggctgcgcatccgcg 348 ||||||| ||||| ||||||||||||| ||||| | ||||||||| | ||| |||||| Sbjct: 17006874 acgcgtcccacgtccaggccgccgtgcggtgcggccaccggagcggcgtccgcctccgcg 17006815 Query: 349 tgcgcagcggcgggcacgactacgagggcctgtcgtaccggtccgtgcgggccgaggcgt 408 ||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| ||| Sbjct: 17006814 tgcgcagcggcgggcacgactacgagggcctctcgtaccgcgccgtgcgcgccgagacgt 17006755 Query: 409 tcgcggtgctcgacctgtcgagcctccgctccgtgcgggtcgacgcgcaggcg--gcgac 466 |||| ||||||||||| | | |||||| ||||||| ||| ||||| |||| || || Sbjct: 17006754 tcgccgtgctcgacctcgccgggctccgcgccgtgcgcgtc--cgcgccggcgacgctac 17006697 Query: 467 cgcgtgggtggactccggagcccagctcggcgagctctattatgcgatcgggaaggccag 526 ||||||||||||||||| ||| |||||| |||||||| || || |||||| ||||| Sbjct: 17006696 ggcgtgggtggactccggcgccacgctcggggagctctactacgccgtcgggacggccaa 17006637 Query: 527 cagcgtgctcgggttccccggcgg 550 | || | ||| |||||||||||| Sbjct: 17006636 ccccgggttcgcgttccccggcgg 17006613
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 155 bits (78), Expect = 2e-34 Identities = 219/264 (82%), Gaps = 4/264 (1%) Strand = Plus / Minus Query: 289 acgcgtcgcacgtgcaggccgccgtgctctgcggacgccggagcgggctgcgcatccgcg 348 ||||||| ||||| ||||||||||||| ||||| | ||||||||| | ||| |||||| Sbjct: 17101526 acgcgtcccacgtccaggccgccgtgcggtgcggccaccggagcggcgtccgcctccgcg 17101467 Query: 349 tgcgcagcggcgggcacgactacgagggcctgtcgtaccggtccgtgcgggccgaggcgt 408 ||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| ||| Sbjct: 17101466 tgcgcagcggcgggcacgactacgagggcctctcgtaccgcgccgtgcgcgccgagacgt 17101407 Query: 409 tcgcggtgctcgacctgtcgagcctccgctccgtgcgggtcgacgcgcaggcg--gcgac 466 |||| ||||||||||| | | |||||| ||||||| ||| ||||| |||| || || Sbjct: 17101406 tcgccgtgctcgacctcgccgggctccgcgccgtgcgcgtc--cgcgccggcgacgctac 17101349 Query: 467 cgcgtgggtggactccggagcccagctcggcgagctctattatgcgatcgggaaggccag 526 ||||||||||||||||| ||| |||||| |||||||| || || |||||| ||||| Sbjct: 17101348 ggcgtgggtggactccggcgccacgctcggggagctctactacgccgtcgggacggccaa 17101289 Query: 527 cagcgtgctcgggttccccggcgg 550 | || | ||| |||||||||||| Sbjct: 17101288 ccccgggttcgcgttccccggcgg 17101265
>emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele A1 Length = 1567 Score = 135 bits (68), Expect = 2e-28 Identities = 134/156 (85%) Strand = Plus / Plus Query: 257 cgtgaggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgct 316 ||||| |||| ||||||||||||| ||||| ||||| || ||| | ||| |||||||| | Sbjct: 174 cgtgaagccgatctacatcgtcacccccaccaacgcctcccacatccagtccgccgtggt 233 Query: 317 ctgcggacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgaggg 376 ||||| |||||| ||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 234 gtgcggccgccggcacggtgtccgcatccgcgtgcgcagcggcgggcacgactacgaggg 293 Query: 377 cctgtcgtaccggtccgtgcgggccgaggcgttcgc 412 ||| |||||||||||| ||| | |||||| |||||| Sbjct: 294 cctctcgtaccggtccctgcagcccgaggagttcgc 329 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 468 gcgtgggtggactccggagcccagctcggcgagctcta 505 |||||||| |||||||| || ||||||||||||||||| Sbjct: 385 gcgtgggtcgactccggcgcgcagctcggcgagctcta 422
>emb|AJ862831.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele B Length = 1644 Score = 127 bits (64), Expect = 4e-26 Identities = 133/156 (85%) Strand = Plus / Plus Query: 257 cgtgaggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgct 316 ||||| ||||||||||||| |||| ||||| ||||| || ||| | ||| |||| ||| | Sbjct: 219 cgtgaagccgctctacatcatcacccccaccaacgcctcccacatccagtccgcggtggt 278 Query: 317 ctgcggacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgaggg 376 ||||| |||||| ||| | |||||||||||||| |||||||| |||||||||||||| Sbjct: 279 gtgcggccgccggcacggcgtccgcatccgcgtgcggagcggcggccacgactacgaggg 338 Query: 377 cctgtcgtaccggtccgtgcgggccgaggcgttcgc 412 ||||||||||||||||| ||| ||||||||||||| Sbjct: 339 cctgtcgtaccggtccgagcgccccgaggcgttcgc 374 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 468 gcgtgggtggactccggagcccagctcggcgagctcta 505 ||||||||||||||||| || ||||||||||||||||| Sbjct: 430 gcgtgggtggactccggtgcgcagctcggcgagctcta 467
>gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 mRNA, complete cds Length = 1569 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%) Strand = Plus / Plus Query: 258 gtgaggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgctc 317 |||| |||||| |||||| |||| || || ||||| || ||| | |||||||||||| | Sbjct: 232 gtgaagccgctgtacatcatcaccccgaccaacgcctcccacatccaggccgccgtggtg 291 Query: 318 tgcggacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgagggc 377 ||||| |||||| ||| ||||||||||||||||||| |||||||||||||||||||| Sbjct: 292 tgcggccgccggcacggcatgcgcatccgcgtgcgcagtggcgggcacgactacgagggg 351 Query: 378 ctgtcgtaccggtccg 393 |||||||||||||||| Sbjct: 352 ctgtcgtaccggtccg 367 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 468 gcgtgggtggactccggagcccagctcggcgagctcta 505 ||||||||||||||||| || ||||||||||| ||||| Sbjct: 442 gcgtgggtggactccggcgcgcagctcggcgacctcta 479
>emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele A Length = 1603 Score = 105 bits (53), Expect = 2e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 257 cgtgaggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgct 316 ||||| ||||||||||||| |||| ||||| ||||| |||||| | ||| |||| ||| | Sbjct: 210 cgtgaagccgctctacatcatcacccccaccaacgcctcgcacatccagtccgcggtggt 269 Query: 317 ctgcggacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgaggg 376 |||||||||||| | | | ||| ||||||| || |||||||| |||||||||||||| Sbjct: 270 gtgcggacgccggcacagcgtccgcctccgcgtccggagcggcggccacgactacgaggg 329 Query: 377 cctgtcgtaccggtccg 393 ||||||||||||||||| Sbjct: 330 cctgtcgtaccggtccg 346 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 468 gcgtgggtggactccggagcccagctcggcgagctcta 505 |||||||| || ||||| || ||||||||||||||||| Sbjct: 421 gcgtgggtcgaatccggcgcgcagctcggcgagctcta 458
>emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele B1 Length = 1580 Score = 103 bits (52), Expect = 6e-19 Identities = 130/156 (83%) Strand = Plus / Plus Query: 257 cgtgaggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgct 316 ||||| ||||||||||||| |||| ||||| |||| || ||| | ||| |||||||| | Sbjct: 174 cgtgaagccgctctacatcatcacccccaccaacgtctcccacatccagtccgccgtggt 233 Query: 317 ctgcggacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgaggg 376 ||||| ||||| | | | |||||||||||||||||||||||||||||||||||||| Sbjct: 234 gtgcggccgccgccacagcgtccgcatccgcgtgcgcagcggcgggcacgactacgaggg 293 Query: 377 cctgtcgtaccggtccgtgcgggccgaggcgttcgc 412 ||| ||||||||||| ||| | ||||| ||||||| Sbjct: 294 cctctcgtaccggtctttgcagcccgagacgttcgc 329 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 468 gcgtgggtggactccggagcccagctcggcgagctcta 505 ||||||||||||||||| || ||||||||||||||||| Sbjct: 385 gcgtgggtggactccggcgcgcagctcggcgagctcta 422
>emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen allergen Hor v 4 Length = 1608 Score = 103 bits (52), Expect = 6e-19 Identities = 130/156 (83%) Strand = Plus / Plus Query: 257 cgtgaggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgct 316 ||||| ||||||||||||| |||| ||||| ||| | || ||| | ||| | || ||| | Sbjct: 213 cgtgaagccgctctacatcatcacccccaccaacacctcccacatccagtctgctgtggt 272 Query: 317 ctgcggacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgaggg 376 ||||| |||||| ||| | ||| |||||||||| |||||||| |||||||||||||| Sbjct: 273 gtgcggccgccggcacggcgtccgcctccgcgtgcggagcggcggccacgactacgaggg 332 Query: 377 cctgtcgtaccggtccgtgcgggccgaggcgttcgc 412 ||||||||||||||||| ||| ||||||||||||| Sbjct: 333 cctgtcgtaccggtccgagcgccccgaggcgttcgc 368 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 468 gcgtgggtggactccggagcccagctcggcgagctcta 505 ||||||||||||||||| || ||||||||||||||||| Sbjct: 424 gcgtgggtggactccggcgcgcagctcggcgagctcta 461
>gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 precursor, mRNA, complete cds Length = 1741 Score = 103 bits (52), Expect = 6e-19 Identities = 130/156 (83%) Strand = Plus / Plus Query: 257 cgtgaggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgct 316 ||||| ||||||||||||| |||| ||||| |||| || ||| | ||| |||||||| | Sbjct: 260 cgtgaagccgctctacatcatcacccccaccaacgtctcccacatccagtccgccgtggt 319 Query: 317 ctgcggacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgaggg 376 ||||| ||||| | | | |||||||||||||||||||||||||||||||||||||| Sbjct: 320 gtgcggccgccgccacagcgtccgcatccgcgtgcgcagcggcgggcacgactacgaggg 379 Query: 377 cctgtcgtaccggtccgtgcgggccgaggcgttcgc 412 ||| ||||||||||| ||| | ||||| ||||||| Sbjct: 380 cctctcgtaccggtctttgcagcccgagacgttcgc 415 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 468 gcgtgggtggactccggagcccagctcggcgagctcta 505 ||||||||||||||||| || ||||||||||||||||| Sbjct: 471 gcgtgggtggactccggcgcgcagctcggcgagctcta 508
>emb|AJ862830.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele A Length = 1603 Score = 101 bits (51), Expect = 2e-18 Identities = 114/135 (84%) Strand = Plus / Plus Query: 257 cgtgaggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgct 316 ||||| |||| |||||||| |||| ||||| ||||| |||||| | ||| |||| ||| | Sbjct: 213 cgtgaagccgatctacatcatcacccccaccaacgcctcgcacatccagtccgcggtggt 272 Query: 317 ctgcggacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgaggg 376 ||||| |||||| ||| | ||| |||||||||| |||||||| |||||||||||||| Sbjct: 273 gtgcggccgccggcacggcatccgcctccgcgtgcggagcggcggccacgactacgaggg 332 Query: 377 cctgtcgtaccggtc 391 ||||||||||||||| Sbjct: 333 cctgtcgtaccggtc 347 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Plus Query: 468 gcgtgggtggactccggagcccagctcggcgagctctattatgcgatcg 516 |||||||| || ||||| || ||||||||||||||||| || ||||||| Sbjct: 424 gcgtgggtcgaatccggcgcgcagctcggcgagctctactacgcgatcg 472
>emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele B Length = 1603 Score = 89.7 bits (45), Expect = 9e-15 Identities = 114/137 (83%) Strand = Plus / Plus Query: 257 cgtgaggccgctctacatcgtcacgcccacgaacgcgtcgcacgtgcaggccgccgtgct 316 ||||| |||||| |||||| |||| ||||| ||||| || ||| | || |||| ||| | Sbjct: 210 cgtgaagccgctgtacatcatcacccccaccaacgcctcccacatccaatccgcggtggt 269 Query: 317 ctgcggacgccggagcgggctgcgcatccgcgtgcgcagcggcgggcacgactacgaggg 376 ||||| |||||| ||| | ||| |||||||||| |||||||| |||||||||||||| Sbjct: 270 gtgcggccgccggcacggcgtccgcctccgcgtgcggagcggcggccacgactacgaggg 329 Query: 377 cctgtcgtaccggtccg 393 ||||||||||||||||| Sbjct: 330 cctgtcgtaccggtccg 346 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 468 gcgtgggtggactccggagcccagctcggcgagctctattatgcgatcgggaaggccagc 527 |||||||| || ||||| || ||||||||||||||||| || || |||| |||| |||| Sbjct: 421 gcgtgggtcgaatccggcgcgcagctcggcgagctctactacgccatcgcgaagaacagc 480 Query: 528 agcgtgctcgggttccc 544 |||||||| |||||| Sbjct: 481 cccgtgctcgcgttccc 497
>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016D02 Length = 157822 Score = 89.7 bits (45), Expect = 9e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 339 cgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtc 391 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 144923 cgcatccgcgtgcgcagcggcggccacgactacgagggcctctcgtaccggtc 144871 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcct 379 |||||| |||||||||||||||||||||||||||||| Sbjct: 112906 tccgcgcgcgcagcggcgggcacgactacgagggcct 112870 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 351 cgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||||||||||| ||||||||||||||||| ||||| Sbjct: 128163 cgcagcggcgggcatgactacgagggcctgtcctaccg 128126 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Minus Query: 468 gcgtgggtggactccggagcccagctcggcgagctcta 505 ||||||||||| ||||| || ||| ||||||||||||| Sbjct: 144794 gcgtgggtggagtccggcgcgcagatcggcgagctcta 144757 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Minus Query: 289 acgcgtcgcacgtgcaggccgccgtgctctgcgg 322 |||| |||||||| ||||||||||||| |||||| Sbjct: 128225 acgcctcgcacgtccaggccgccgtgcgctgcgg 128192
>dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A01, full insert sequence Length = 2030 Score = 89.7 bits (45), Expect = 9e-15 Identities = 51/53 (96%) Strand = Plus / Plus Query: 339 cgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccggtc 391 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 338 cgcatccgcgtgcgcagcggcggccacgactacgagggcctctcgtaccggtc 390 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 468 gcgtgggtggactccggagcccagctcggcgagctcta 505 ||||||||||| ||||| || ||| ||||||||||||| Sbjct: 467 gcgtgggtggagtccggcgcgcagatcggcgagctcta 504
>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4 Length = 1272 Score = 83.8 bits (42), Expect = 6e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 339 cgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 388 ||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 32 cgcatccgcgtacgcagcggcgggcacgactacgagggcctctcgtaccg 81 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 468 gcgtgggtggactccggagcccagctcggcgagctcta 505 |||||||| |||||||| || ||||||||||||||||| Sbjct: 161 gcgtgggtcgactccggcgcgcagctcggcgagctcta 198
>gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0008E07, complete sequence Length = 146679 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 106106 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccg 106151
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 12338628 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccg 12338673 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 gctgctacgcctcctccgtcg 111 ||||||||||||||||||||| Sbjct: 15988936 gctgctacgcctcctccgtcg 15988956 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 gtgctcgacctgtcgagcctccgct 438 ||||||||||||||||| ||||||| Sbjct: 15808441 gtgctcgacctgtcgaggctccgct 15808465
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 7689749 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccg 7689794
>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_A12 Length = 149089 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 26014 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtaccg 26059
>ref|XM_481787.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1650 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 335 gctgcgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 386 |||||||||||||||||||||||||| |||| |||||||||||| |||||| Sbjct: 294 gctgcgcatccgcgtgcgcagcggcgcgcacagctacgagggcctctcgtac 345
>ref|NM_192799.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3201 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 386 |||||| |||||||||||||||||||||||||||||| |||||| Sbjct: 2462 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtac 2419
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 335 gctgcgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 386 |||||||||||||||||||||||||| |||| |||||||||||| |||||| Sbjct: 15504540 gctgcgcatccgcgtgcgcagcggcgcgcacagctacgagggcctctcgtac 15504489 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Minus Query: 342 atccgcgtgcgcagcggcgggcacgactacgagggcctgtc 382 ||||| || ||||||||||||||| |||||||||| |||| Sbjct: 3403307 atccgtgtacgcagcggcgggcacagctacgagggcttgtc 3403267
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 386 |||||| |||||||||||||||||||||||||||||| |||||| Sbjct: 24483701 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtac 24483744 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||| |||||||||||||||| ||||||||||||| |||||||| Sbjct: 10209768 tccgcgcgcgcagcggcgggcacaactacgagggcctctcgtaccg 10209723
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 386 |||||| |||||||||||||||||||||||||||||| |||||| Sbjct: 64085 tccgcgcgcgcagcggcgggcacgactacgagggcctctcgtac 64128
>dbj|AP004645.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_B10 Length = 148508 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 335 gctgcgcatccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtac 386 |||||||||||||||||||||||||| |||| |||||||||||| |||||| Sbjct: 52298 gctgcgcatccgcgtgcgcagcggcgcgcacagctacgagggcctctcgtac 52247
>ref|XM_462837.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 975 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||| |||||||||||||||| ||||||||||||| |||||||| Sbjct: 674 tccgcgcgcgcagcggcgggcacaactacgagggcctctcgtaccg 719
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498A12 Length = 159749 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||| |||||||||||||||| ||||||||||||| |||||||| Sbjct: 75082 tccgcgcgcgcagcggcgggcacaactacgagggcctctcgtaccg 75037
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 343 tccgcgtgcgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||| |||||||||||||||| ||||||||||||| |||||||| Sbjct: 134367 tccgcgcgcgcagcggcgggcacaactacgagggcctctcgtaccg 134322
>dbj|AK105176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H12, full insert sequence Length = 1757 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 351 cgcagcggcgggcacgactacgagggcctgtcgtaccg 388 |||||||||||||| ||||||||||||||||| ||||| Sbjct: 368 cgcagcggcgggcatgactacgagggcctgtcctaccg 405 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 289 acgcgtcgcacgtgcaggccgccgtgctctgcgg 322 |||| |||||||| ||||||||||||| |||||| Sbjct: 306 acgcctcgcacgtccaggccgccgtgcgctgcgg 339
>ref|XM_317854.2| Anopheles gambiae str. PEST ENSANGP00000014393 (ENSANGG00000011904), partial mRNA Length = 2769 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 299 cgtgcaggccgccgtgctctgc 320 |||||||||||||||||||||| Sbjct: 2454 cgtgcaggccgccgtgctctgc 2475
>ref|NM_189046.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1674 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 342 atccgcgtgcgcagcggcgggcacgactacgagggcctgtc 382 ||||| || ||||||||||||||| |||||||||| |||| Sbjct: 318 atccgtgtacgcagcggcgggcacagctacgagggcttgtc 358
>ref|XM_507136.1| PREDICTED Oryza sativa (japonica cultivar-group), P0498E12.107 mRNA Length = 1694 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 342 atccgcgtgcgcagcggcgggcacgactacgagggcctgtc 382 ||||| || ||||||||||||||| |||||||||| |||| Sbjct: 319 atccgtgtacgcagcggcgggcacagctacgagggcttgtc 359
>gb|AC135417.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1314_A05, complete sequence Length = 109853 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 gctgctacgcctcctccgtcg 111 ||||||||||||||||||||| Sbjct: 102601 gctgctacgcctcctccgtcg 102621
>gb|AC135424.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015F11, complete sequence Length = 177574 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 gctgctacgcctcctccgtcg 111 ||||||||||||||||||||| Sbjct: 74687 gctgctacgcctcctccgtcg 74707
>gb|AC104706.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_F05, complete sequence Length = 119573 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gtgctcgacctgtcgagcctccgct 438 ||||||||||||||||| ||||||| Sbjct: 80526 gtgctcgacctgtcgaggctccgct 80502
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 ctcgtcgccttcgccctgctc 89 ||||||||||||||||||||| Sbjct: 2072906 ctcgtcgccttcgccctgctc 2072886
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16 Length = 346879 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 464 gaccgcgtgggtggactccgg 484 ||||||||||||||||||||| Sbjct: 26959 gaccgcgtgggtggactccgg 26939
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 243 ttcaccccgagcaccgtgaggccgc 267 |||||||| |||||||||||||||| Sbjct: 2131716 ttcacccccagcaccgtgaggccgc 2131692
>gb|AE012507.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 415 of 460 of the complete genome Length = 12726 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 ccggagcgggctgcgcatccg 346 ||||||||||||||||||||| Sbjct: 2771 ccggagcgggctgcgcatccg 2751
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 ccggagcgggctgcgcatccg 346 ||||||||||||||||||||| Sbjct: 4659743 ccggagcgggctgcgcatccg 4659723
>gb|AE004447.1| Pseudomonas aeruginosa PAO1, section 8 of 529 of the complete genome Length = 18088 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 336 ctgcgcatccgcgtgcgcagcggcg 360 |||||||||||| |||||||||||| Sbjct: 10960 ctgcgcatccgcctgcgcagcggcg 10984
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Minus Query: 342 atccgcgtgcgcagcggcgggcacgactacgagggcctgtc 382 ||||| || ||||||||||||||| |||||||||| |||| Sbjct: 36726 atccgtgtacgcagcggcgggcacagctacgagggcttgtc 36686
>dbj|AK104045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-F06, full insert sequence Length = 1674 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 342 atccgcgtgcgcagcggcgggcacgactacgagggcctgtc 382 ||||| || ||||||||||||||| |||||||||| |||| Sbjct: 318 atccgtgtacgcagcggcgggcacagctacgagggcttgtc 358
>dbj|AK069480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019G18, full insert sequence Length = 1694 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 342 atccgcgtgcgcagcggcgggcacgactacgagggcctgtc 382 ||||| || ||||||||||||||| |||||||||| |||| Sbjct: 319 atccgtgtacgcagcggcgggcacagctacgagggcttgtc 359
>gb|AC103624.9| Mus musculus chromosome 5, clone RP24-258B22, complete sequence Length = 172330 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 agatggccatggctaggagc 56 |||||||||||||||||||| Sbjct: 8795 agatggccatggctaggagc 8814
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 tcgtgttcacgccgagctcg 194 |||||||||||||||||||| Sbjct: 1416293 tcgtgttcacgccgagctcg 1416312
>ref|XM_363202.1| Magnaporthe grisea 70-15 hypothetical protein (MG08786.4) partial cds Length = 1656 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 cgtgcgcagcggcgggcacg 366 |||||||||||||||||||| Sbjct: 449 cgtgcgcagcggcgggcacg 468
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence Length = 143392 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 cacgactacgagggcctgtc 382 |||||||||||||||||||| Sbjct: 77569 cacgactacgagggcctgtc 77588
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 458 ggcggcgaccgcgtgggtggactc 481 ||||||||||||||||| |||||| Sbjct: 952367 ggcggcgaccgcgtgggaggactc 952344
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgtgcctgtcggcgagcatc 164 |||||||||||||||||||| Sbjct: 1441982 cgtgcctgtcggcgagcatc 1441963
>emb|BX012201.1|CNS08HKT Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA19BF12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 846 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cgtcgccttcgccctgctct 90 |||||||||||||||||||| Sbjct: 732 cgtcgccttcgccctgctct 751
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 169 gccagctcgtgttcacgccgagctcgccgtcg 200 ||||| |||| ||||||||| ||||||||||| Sbjct: 1907664 gccagatcgtcttcacgccgggctcgccgtcg 1907633
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 cggagcccagctcggcgagc 501 |||||||||||||||||||| Sbjct: 271583 cggagcccagctcggcgagc 271564
>gb|DQ397869.1| Cenarchaeum symbiosum clone C04C05, complete sequence Length = 40287 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ctgtcggcgagcatcccccg 169 |||||||||||||||||||| Sbjct: 11225 ctgtcggcgagcatcccccg 11206
>gb|DQ397845.1| Cenarchaeum symbiosum clone C01B07, complete sequence Length = 41876 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 ctgtcggcgagcatcccccg 169 |||||||||||||||||||| Sbjct: 29735 ctgtcggcgagcatcccccg 29754
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 gccgaggcgttcgcggtgctcgac 422 ||||||| |||||||||||||||| Sbjct: 1100090 gccgaggggttcgcggtgctcgac 1100067
>gb|AC016580.7|AC016580 Homo sapiens chromosome 5 clone CTD-2509J24, complete sequence Length = 184118 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 caaagatggccatggctaggagct 57 ||||||||||||||||||| |||| Sbjct: 87366 caaagatggccatggctagcagct 87389
>gb|AC034246.4|AC034246 Homo sapiens chromosome 5 clone RP11-160F8, complete sequence Length = 155025 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 caaagatggccatggctaggagct 57 ||||||||||||||||||| |||| Sbjct: 141167 caaagatggccatggctagcagct 141190
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 cgtgcgggccgaggcgttcg 411 |||||||||||||||||||| Sbjct: 303068 cgtgcgggccgaggcgttcg 303087
>gb|AC008960.6|AC008960 Homo sapiens chromosome 5 clone CTD-2354D24, complete sequence Length = 74999 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 caaagatggccatggctaggagct 57 ||||||||||||||||||| |||| Sbjct: 21778 caaagatggccatggctagcagct 21755
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 389 gtccgtgcgggccgaggcgttcgc 412 ||||| |||||||||||||||||| Sbjct: 5524566 gtccgcgcgggccgaggcgttcgc 5524543
>ref|XM_311256.2| Anopheles gambiae str. PEST ENSANGP00000001582 (ENSANGG00000001337), partial mRNA Length = 1908 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cgtcgccttcgccctgctct 90 |||||||||||||||||||| Sbjct: 630 cgtcgccttcgccctgctct 649
>gb|AC104742.9| Mus musculus chromosome 5, clone RP24-334A12, complete sequence Length = 117378 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 agatggccatggctaggagc 56 |||||||||||||||||||| Sbjct: 2850 agatggccatggctaggagc 2831
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 182 cacgccgagctcgccgtcgttcacgccg 209 ||||||||| ||||||||||||||||| Sbjct: 1381277 cacgccgaggacgccgtcgttcacgccg 1381304
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 acgtgcaggccgccgtgctc 317 |||||||||||||||||||| Sbjct: 3164632 acgtgcaggccgccgtgctc 3164613
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 cgcgcaggcggcgaccgcgt 471 |||||||||||||||||||| Sbjct: 112880 cgcgcaggcggcgaccgcgt 112899
>emb|AL929082.7| Zebrafish DNA sequence from clone CH211-113P18, complete sequence Length = 195316 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ctgcagcgtacaacaagcta 28 |||||||||||||||||||| Sbjct: 145111 ctgcagcgtacaacaagcta 145092 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,833,164 Number of Sequences: 3902068 Number of extensions: 2833164 Number of successful extensions: 59650 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57578 Number of HSP's gapped (non-prelim): 2060 length of query: 554 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 531 effective length of database: 17,143,297,704 effective search space: 9103091080824 effective search space used: 9103091080824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
