>TRPB_STAES (Q8CPB1) Tryptophan synthase beta chain (EC 4.2.1.20)|
          Length = 402

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 23/64 (35%), Positives = 28/64 (43%)
 Frame = +2

Query: 290 HMHHNTLGMHKPGVKLHKGSDSFIQNPGGRG*LFHSSKGYIGF*SIVDERSFYAFQSRAY 469
           H H   +G  KPGV LH      IQN  G+  L HS    + +  I  E S+Y    R  
Sbjct: 269 HNHALAIGKGKPGV-LHGSKMYLIQNDDGQIELAHSISAGLDYPGIGPEHSYYNDIGRVS 327

Query: 470 KTSA 481
             SA
Sbjct: 328 YVSA 331

>TRPB_STAEQ (Q5HPH0) Tryptophan synthase beta chain (EC 4.2.1.20)|
          Length = 402

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 23/64 (35%), Positives = 28/64 (43%)
 Frame = +2

Query: 290 HMHHNTLGMHKPGVKLHKGSDSFIQNPGGRG*LFHSSKGYIGF*SIVDERSFYAFQSRAY 469
           H H   +G  KPGV LH      IQN  G+  L HS    + +  I  E S+Y    R  
Sbjct: 269 HNHALAIGKGKPGV-LHGSKMYLIQNDDGQIELAHSISAGLDYPGIGPEHSYYNDIGRVS 327

Query: 470 KTSA 481
             SA
Sbjct: 328 YVSA 331

>NED4L_HUMAN (Q96PU5) E3 ubiquitin-protein ligase NEDD4-like protein (EC|
           6.3.2.-) (Nedd4-2) (NEDD4.2)
          Length = 975

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 92  PTARPATELRSPDFS---RPTPSAPVAWVHVTAGWVKGWRPRR 211
           P + PA   RS   +    PTPS  VA+VH T G   GW  R+
Sbjct: 355 PPSAPAGRARSSTVTGGEEPTPS--VAYVHTTPGLPSGWEERK 395

>PKHG4_HUMAN (Q58EX7) Puratrophin-1 (Pleckstrin homology domain-containing|
           family G member 4) (Purkinje cell atrophy-associated
           protein 1)
          Length = 1191

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = -3

Query: 286 GSTAKLLCVSRVTSRSSHQPMHGP*S---TRPPALHPPGCHMHPCYWSTGGGSRKIRAP* 116
           GSTA L CVS+V +  +H P+    S       +L  P CH H         +  I A  
Sbjct: 653 GSTASL-CVSQVPAAPAHPPLRKAYSFDRNLGQSLSEPACHCH--------HAATIAA-- 701

Query: 115 LCRRP--GGGSL 86
            CRRP  GGG+L
Sbjct: 702 -CRRPEAGGGAL 712

>RSSAB_ARATH (Q8H173) 40S ribosomal protein SA-2 (p40 protein homolog)|
          Length = 280

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 59  ACFAETGIDQRPTARPATELRSPDFSRPTPSAPVAWVHVTAGWVKGWRPRRSW 217
           A +   G DQ  TA+ +    S +  +P  +AP   V V AGW     P   W
Sbjct: 227 ADYGMVGGDQWTTAQISDAAWSGEVEQPISAAPAVGVTVAAGWEAASVPAAGW 279

>NED4L_MOUSE (Q8CFI0) E3 ubiquitin-protein ligase NEDD4-like protein (EC|
           6.3.2.-) (Nedd4-2) (NEDD4.2)
          Length = 1004

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +2

Query: 92  PTARPATELRSPDFS---RPTPSAPVAWVHVTAGWVKGWRPRR 211
           P + P    RS   +    PTPS  VA+VH T G   GW  R+
Sbjct: 384 PPSTPTRRARSSTVTGGEEPTPS--VAYVHTTPGLPSGWEERK 424

>CAH12_MOUSE (Q8CI85) Carbonic anhydrase 12 precursor (EC 4.2.1.1) (Carbonic|
           anhydrase XII) (Carbonate dehydratase XII) (CA-XII)
          Length = 354

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = -1

Query: 372 PGFWIKESLPLC---------SLTPGLCMPSVLWCMCKGPLQ 274
           PGF I+E LP           SLT   C P+VLW + + P+Q
Sbjct: 204 PGFNIEELLPESPGEYYRYEGSLTTPPCYPTVLWTVFRNPVQ 245

>MT_PODSI (Q708T3) Metallothionein (MT)|
          Length = 63

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 339 CSLTPGLCMPSVLWCMCKGPLQNFCAC 259
           CS  P  C      C+CK PL + C+C
Sbjct: 35  CSCCPAGCAKCAKSCVCKEPLSDKCSC 61

>YXIO_BACSU (P42306) Hypothetical protein yxiO|
          Length = 428

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 352 FFYPESWWARLTVPFIKRLHR 414
           FF   +WW   T+P IK +H+
Sbjct: 187 FFITAAWWGLFTIPMIKHVHQ 207

>APPC_ECOLI (P26459) Cytochrome bd-II oxidase subunit 1 (EC 1.10.3.-)|
           (Cytochrome bd-II oxidase subunit I)
          Length = 514

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 149 SAPVAWVHVTAGWVKGWRPRRSWTMHGLVTTPRCHS 256
           S P+ W+ + AGW      R+ W +  ++ T   HS
Sbjct: 429 SLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHS 464

>MT1_COLLI (P15786) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)|
          Length = 63

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 339 CSLTPGLCMPSVLWCMCKGPLQNFCAC 259
           CS  P  C      C+CKGP    C+C
Sbjct: 35  CSCCPAGCAKCAQGCVCKGPPSAKCSC 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,033,989
Number of Sequences: 219361
Number of extensions: 2042245
Number of successful extensions: 4801
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4792
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)