Clone Name | bart23h04 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_001029597.1| Caenorhabditis elegans K07E3.7b (K07E3.7) mRNA, complete cds Length = 3612 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 383 tgactgttccattcatcaaaaggc 406 |||||||||||||||||||||||| Sbjct: 973 tgactgttccattcatcaaaaggc 950
>ref|NM_001029596.1| Caenorhabditis elegans K07E3.7a (K07E3.7) mRNA, complete cds Length = 4210 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 383 tgactgttccattcatcaaaaggc 406 |||||||||||||||||||||||| Sbjct: 1032 tgactgttccattcatcaaaaggc 1009
>gb|U41552.1| Caenorhabditis elegans cosmid K07E3, complete sequence Length = 34851 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Plus Query: 383 tgactgttccattcatcaaaaggc 406 |||||||||||||||||||||||| Sbjct: 14141 tgactgttccattcatcaaaaggc 14164
>ref|XM_529014.1| PREDICTED: Pan troglodytes similar to tyrosine 3/tryptophan 5 -monooxygenase activation protein, zeta polypeptide; protein kinase C inhibitor protein-1; phospholipase A2; 14-3-3 zeta; YWHAZ protein (LOC473642), mRNA Length = 393 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 541 tcaccagcagcaacctcagaca 562 |||||||||||||||||||||| Sbjct: 206 tcaccagcagcaacctcagaca 185
>emb|AL356265.10| Human DNA sequence from clone RP13-83C14 on chromosome X Contains a YWHA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein pseudogene and a keratin 8 (KRT8) pseudogene, complete sequence Length = 165609 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 541 tcaccagcagcaacctcagaca 562 |||||||||||||||||||||| Sbjct: 115120 tcaccagcagcaacctcagaca 115141
>gb|AC124917.4| Homo sapiens chromosome 1 clone RP5-910L7, complete sequence Length = 156168 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 524 cacaagcaccactcacctcacc 545 |||||||||||||||||||||| Sbjct: 143966 cacaagcaccactcacctcacc 143987
>gb|AC092805.2| Homo sapiens chromosome 1 clone RP11-99A8, complete sequence Length = 162587 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 524 cacaagcaccactcacctcacc 545 |||||||||||||||||||||| Sbjct: 54127 cacaagcaccactcacctcacc 54148
>gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence Length = 250531 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 21 aaataatctgaagaaggaagtgagaa 46 ||||||||||||||| |||||||||| Sbjct: 68837 aaataatctgaagaatgaagtgagaa 68812
>gb|AC104059.5| Homo sapiens BAC clone RP13-514E23 from 4, complete sequence Length = 165223 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 323 ccaggggtcaagctgcacaaaggaa 347 ||||||| ||||||||||||||||| Sbjct: 19419 ccaggggacaagctgcacaaaggaa 19443
>ref|XM_508945.1| PREDICTED: Pan troglodytes von Willebrand factor (LOC451773), mRNA Length = 8442 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 1217 acctcaccagcagcaacctc 1236
>ref|NM_000552.3| Homo sapiens von Willebrand factor (VWF), mRNA Length = 8833 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 3267 acctcaccagcagcaacctc 3286
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 cttgcacatgcaccacaaca 305 |||||||||||||||||||| Sbjct: 12644047 cttgcacatgcaccacaaca 12644028
>gb|AC102368.6| Mus musculus chromosome 14, clone RP23-220D8, complete sequence Length = 208781 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tctgaagaaggaagtgagaa 46 |||||||||||||||||||| Sbjct: 112595 tctgaagaaggaagtgagaa 112576
>emb|AL356299.16| Human DNA sequence from clone CTD-3216D2 on chromosome 20 Contains the AHCY gene encoding S-adenosylhomocysteine hydrolase, the 5' end of the ITCH gene for itchy homolog E3 ubiquitin protein ligase (mouse), the CDC42P1 gene for cell division cycle 42 pseudogene 1, a pseudogene similar to part of laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1) and two CpG islands, complete sequence Length = 152334 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 atctgaagaaggaagtgagaattc 49 |||||||||||||||||| ||||| Sbjct: 141476 atctgaagaaggaagtgataattc 141499
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 tggtgactactcctagatgt 250 |||||||||||||||||||| Sbjct: 920205 tggtgactactcctagatgt 920224
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence Length = 141545 Score = 40.1 bits (20), Expect = 7.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 354 cttttatccagaatcctggtgggcgcggctgactgttccattca 397 ||||||||| |||||| |||||| | | ||||||||||||||| Sbjct: 98657 cttttatcctgaatcccggtgggagacggtgactgttccattca 98614
>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0030D15, from chromosome 3, complete sequence Length = 151972 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cttgcacatgcaccacaaca 305 |||||||||||||||||||| Sbjct: 32942 cttgcacatgcaccacaaca 32961
>gb|AC005301.22| Homo sapiens chromosome 22 clone p15j16 map 22q11, complete sequence Length = 113688 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 21526 acctcaccagcagcaacctc 21507
>gb|AC006576.15| Homo sapiens Chromosome 12p13.3 BAC Clone 762c12, complete sequence Length = 116840 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 62630 acctcaccagcagcaacctc 62611
>ref|NG_001212.1| Homo sapiens von Willebrand factor pseudogene (VWFP) on chromosome 22 Length = 14575 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 168 acctcaccagcagcaacctc 187
>gb|AF116677.1|AF116677 Homo sapiens PRO1966 mRNA, complete cds Length = 1200 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gaagaaggaagtgagaattc 49 |||||||||||||||||||| Sbjct: 700 gaagaaggaagtgagaattc 719
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 354 cttttatccagaatcctggtgggcgcggctgactgttccattca 397 ||||||||| |||||| |||||| | | ||||||||||||||| Sbjct: 26322080 cttttatcctgaatcccggtgggagacggtgactgttccattca 26322037
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 cttgcacatgcaccacaaca 305 |||||||||||||||||||| Sbjct: 12640810 cttgcacatgcaccacaaca 12640791
>gb|AC005846.1| Homo sapiens 12 PAC RPCI3-467F14 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 111904 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 94648 acctcaccagcagcaacctc 94667
>dbj|BS000078.1| Pan troglodytes chromosome 22 clone:PTB-017L22, map 22, complete sequences Length = 161914 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 aaaaggctacataggatttt 419 |||||||||||||||||||| Sbjct: 80448 aaaaggctacataggatttt 80429
>dbj|AK110771.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-A12, full insert sequence Length = 852 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cttgcacatgcaccacaaca 305 |||||||||||||||||||| Sbjct: 79 cttgcacatgcaccacaaca 98
>dbj|AP000657.3| Homo sapiens genomic DNA, chromosome 21 clone:RP11-662K22, complete sequence Length = 51621 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 aaaaggctacataggatttt 419 |||||||||||||||||||| Sbjct: 48289 aaaaggctacataggatttt 48270
>dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, section 28/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 aaaaggctacataggatttt 419 |||||||||||||||||||| Sbjct: 92661 aaaaggctacataggatttt 92642
>dbj|AP000462.2| Homo sapiens genomic DNA, chromosome 11q clone:B4H11, complete sequences Length = 114467 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gaagaaggaagtgagaattc 49 |||||||||||||||||||| Sbjct: 36008 gaagaaggaagtgagaattc 35989
>gb|AC120438.9| Mus musculus chromosome 7, clone RP24-572G2, complete sequence Length = 169442 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tctgaagaaggaagtgagaa 46 |||||||||||||||||||| Sbjct: 89970 tctgaagaaggaagtgagaa 89951
>gb|M10321.1|HUMVWFM Human von Willebrand factor mRNA, 3' end Length = 6360 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 801 acctcaccagcagcaacctc 820
>gb|M25847.1|HUMVWFA20 Human von Willebrand factor gene, exons 23 and 24 Length = 1310 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 380 acctcaccagcagcaacctc 399
>emb|AL845352.7| Mouse DNA sequence from clone RP23-29A7 on chromosome 2, complete sequence Length = 196996 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 taatctgaagaaggaagtga 43 |||||||||||||||||||| Sbjct: 111771 taatctgaagaaggaagtga 111790
>gb|M60676.1|HUMVWFAB Human von Willebrand factor pseudogene corresponding to exons 23 through 34 Length = 21033 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 1166 acctcaccagcagcaacctc 1185
>gb|M60675.1|HUMVWFAA Human von Willebrand factor gene, exons 23 through 34 Length = 21352 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 1363 acctcaccagcagcaacctc 1382
>emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on chromosome 11, complete sequence Length = 194872 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ctgaagaaggaagtgagaat 47 |||||||||||||||||||| Sbjct: 184713 ctgaagaaggaagtgagaat 184732
>emb|X04146.1|HSVWFR Human mRNA fragment (5'terminus) for von Willebrand factor (vWF) Length = 4429 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 3246 acctcaccagcagcaacctc 3265
>emb|X04385.1|HSVWFR1 Human mRNA for pre-pro-von Willebrand factor Length = 8575 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 3116 acctcaccagcagcaacctc 3135
>dbj|AP000548.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region, clone:KB556G11 Length = 128077 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 acctcaccagcagcaacctc 557 |||||||||||||||||||| Sbjct: 75240 acctcaccagcagcaacctc 75221
>dbj|AB017654.1| Homo sapiens genomic DNA, chromosome 11q23.2, clone:KB4H11, complete sequence Length = 170965 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gaagaaggaagtgagaattc 49 |||||||||||||||||||| Sbjct: 78460 gaagaaggaagtgagaattc 78479 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,807,529 Number of Sequences: 3902068 Number of extensions: 4807529 Number of successful extensions: 80060 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79909 Number of HSP's gapped (non-prelim): 151 length of query: 564 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 541 effective length of database: 17,143,297,704 effective search space: 9274524057864 effective search space used: 9274524057864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)