ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart23h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001029597.1| Caenorhabditis elegans K07E3.7b (K07E3.7) mR... 48 0.031
2ref|NM_001029596.1| Caenorhabditis elegans K07E3.7a (K07E3.7) mR... 48 0.031
3gb|U41552.1| Caenorhabditis elegans cosmid K07E3, complete sequence 48 0.031
4ref|XM_529014.1| PREDICTED: Pan troglodytes similar to tyrosine ... 44 0.49
5emb|AL356265.10| Human DNA sequence from clone RP13-83C14 on chr... 44 0.49
6gb|AC124917.4| Homo sapiens chromosome 1 clone RP5-910L7, comple... 44 0.49
7gb|AC092805.2| Homo sapiens chromosome 1 clone RP11-99A8, comple... 44 0.49
8gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section ... 44 0.49
9gb|AC104059.5| Homo sapiens BAC clone RP13-514E23 from 4, comple... 42 1.9
10ref|XM_508945.1| PREDICTED: Pan troglodytes von Willebrand facto... 40 7.7
11ref|NM_000552.3| Homo sapiens von Willebrand factor (VWF), mRNA 40 7.7
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.7
13gb|AC102368.6| Mus musculus chromosome 14, clone RP23-220D8, com... 40 7.7
14emb|AL356299.16| Human DNA sequence from clone CTD-3216D2 on chr... 40 7.7
15emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 7.7
16emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4,... 40 7.7
17gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.7
18gb|AC005301.22| Homo sapiens chromosome 22 clone p15j16 map 22q1... 40 7.7
19gb|AC006576.15| Homo sapiens Chromosome 12p13.3 BAC Clone 762c12... 40 7.7
20ref|NG_001212.1| Homo sapiens von Willebrand factor pseudogene (... 40 7.7
21gb|AF116677.1|AF116677 Homo sapiens PRO1966 mRNA, complete cds 40 7.7
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
23dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
24gb|AC005846.1| Homo sapiens 12 PAC RPCI3-467F14 (Roswell Park Ca... 40 7.7
25dbj|BS000078.1| Pan troglodytes chromosome 22 clone:PTB-017L22, ... 40 7.7
26dbj|AK110771.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
27dbj|AP000657.3| Homo sapiens genomic DNA, chromosome 21 clone:RP... 40 7.7
28dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.7
29dbj|AP000462.2| Homo sapiens genomic DNA, chromosome 11q clone:B... 40 7.7
30gb|AC120438.9| Mus musculus chromosome 7, clone RP24-572G2, comp... 40 7.7
31gb|M10321.1|HUMVWFM Human von Willebrand factor mRNA, 3' end 40 7.7
32gb|M25847.1|HUMVWFA20 Human von Willebrand factor gene, exons 23... 40 7.7
33emb|AL845352.7| Mouse DNA sequence from clone RP23-29A7 on chrom... 40 7.7
34gb|M60676.1|HUMVWFAB Human von Willebrand factor pseudogene corr... 40 7.7
35gb|M60675.1|HUMVWFAA Human von Willebrand factor gene, exons 23 ... 40 7.7
36emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on ch... 40 7.7
37emb|X04146.1|HSVWFR Human mRNA fragment (5'terminus) for von Wil... 40 7.7
38emb|X04385.1|HSVWFR1 Human mRNA for pre-pro-von Willebrand factor 40 7.7
39dbj|AP000548.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 40 7.7
40dbj|AB017654.1| Homo sapiens genomic DNA, chromosome 11q23.2, cl... 40 7.7

>ref|NM_001029597.1| Caenorhabditis elegans K07E3.7b (K07E3.7) mRNA, complete cds
          Length = 3612

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 383 tgactgttccattcatcaaaaggc 406
           ||||||||||||||||||||||||
Sbjct: 973 tgactgttccattcatcaaaaggc 950



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>ref|NM_001029596.1| Caenorhabditis elegans K07E3.7a (K07E3.7) mRNA, complete cds
          Length = 4210

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 383  tgactgttccattcatcaaaaggc 406
            ||||||||||||||||||||||||
Sbjct: 1032 tgactgttccattcatcaaaaggc 1009



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>gb|U41552.1| Caenorhabditis elegans cosmid K07E3, complete sequence
          Length = 34851

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 383   tgactgttccattcatcaaaaggc 406
             ||||||||||||||||||||||||
Sbjct: 14141 tgactgttccattcatcaaaaggc 14164



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>ref|XM_529014.1| PREDICTED: Pan troglodytes similar to tyrosine 3/tryptophan 5
           -monooxygenase activation protein, zeta polypeptide;
           protein kinase C inhibitor protein-1; phospholipase A2;
           14-3-3 zeta; YWHAZ protein (LOC473642), mRNA
          Length = 393

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 541 tcaccagcagcaacctcagaca 562
           ||||||||||||||||||||||
Sbjct: 206 tcaccagcagcaacctcagaca 185



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>emb|AL356265.10| Human DNA sequence from clone RP13-83C14 on chromosome X Contains a YWHA
              tyrosine 3-monooxygenase/tryptophan 5-monooxygenase
              activation protein pseudogene and a keratin 8 (KRT8)
              pseudogene, complete sequence
          Length = 165609

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 541    tcaccagcagcaacctcagaca 562
              ||||||||||||||||||||||
Sbjct: 115120 tcaccagcagcaacctcagaca 115141



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>gb|AC124917.4| Homo sapiens chromosome 1 clone RP5-910L7, complete sequence
          Length = 156168

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 524    cacaagcaccactcacctcacc 545
              ||||||||||||||||||||||
Sbjct: 143966 cacaagcaccactcacctcacc 143987



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>gb|AC092805.2| Homo sapiens chromosome 1 clone RP11-99A8, complete sequence
          Length = 162587

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 524   cacaagcaccactcacctcacc 545
             ||||||||||||||||||||||
Sbjct: 54127 cacaagcaccactcacctcacc 54148



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>gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete
             sequence
          Length = 250531

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 21    aaataatctgaagaaggaagtgagaa 46
             ||||||||||||||| ||||||||||
Sbjct: 68837 aaataatctgaagaatgaagtgagaa 68812



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>gb|AC104059.5| Homo sapiens BAC clone RP13-514E23 from 4, complete sequence
          Length = 165223

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 323   ccaggggtcaagctgcacaaaggaa 347
             ||||||| |||||||||||||||||
Sbjct: 19419 ccaggggacaagctgcacaaaggaa 19443



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>ref|XM_508945.1| PREDICTED: Pan troglodytes von Willebrand factor (LOC451773), mRNA
          Length = 8442

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 538  acctcaccagcagcaacctc 557
            ||||||||||||||||||||
Sbjct: 1217 acctcaccagcagcaacctc 1236



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>ref|NM_000552.3| Homo sapiens von Willebrand factor (VWF), mRNA
          Length = 8833

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 538  acctcaccagcagcaacctc 557
            ||||||||||||||||||||
Sbjct: 3267 acctcaccagcagcaacctc 3286



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 286      cttgcacatgcaccacaaca 305
                ||||||||||||||||||||
Sbjct: 12644047 cttgcacatgcaccacaaca 12644028



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>gb|AC102368.6| Mus musculus chromosome 14, clone RP23-220D8, complete sequence
          Length = 208781

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     tctgaagaaggaagtgagaa 46
              ||||||||||||||||||||
Sbjct: 112595 tctgaagaaggaagtgagaa 112576



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>emb|AL356299.16| Human DNA sequence from clone CTD-3216D2 on chromosome 20 Contains the
              AHCY gene encoding S-adenosylhomocysteine hydrolase, the 5'
              end of the ITCH gene for itchy homolog E3 ubiquitin protein
              ligase (mouse), the CDC42P1 gene for cell division cycle 42
              pseudogene 1, a pseudogene similar to part of laminin
              receptor 1 (ribosomal protein SA, 67kDa) (LAMR1) and two
              CpG islands, complete sequence
          Length = 152334

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 26     atctgaagaaggaagtgagaattc 49
              |||||||||||||||||| |||||
Sbjct: 141476 atctgaagaaggaagtgataattc 141499



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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    tggtgactactcctagatgt 250
              ||||||||||||||||||||
Sbjct: 920205 tggtgactactcctagatgt 920224



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>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10,
             complete sequence
          Length = 141545

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 354   cttttatccagaatcctggtgggcgcggctgactgttccattca 397
             ||||||||| |||||| |||||| |  | |||||||||||||||
Sbjct: 98657 cttttatcctgaatcccggtgggagacggtgactgttccattca 98614



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>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   cttgcacatgcaccacaaca 305
             ||||||||||||||||||||
Sbjct: 32942 cttgcacatgcaccacaaca 32961



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>gb|AC005301.22| Homo sapiens chromosome 22 clone p15j16 map 22q11, complete sequence
          Length = 113688

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   acctcaccagcagcaacctc 557
             ||||||||||||||||||||
Sbjct: 21526 acctcaccagcagcaacctc 21507



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>gb|AC006576.15| Homo sapiens Chromosome 12p13.3 BAC Clone 762c12, complete sequence
          Length = 116840

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   acctcaccagcagcaacctc 557
             ||||||||||||||||||||
Sbjct: 62630 acctcaccagcagcaacctc 62611



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>ref|NG_001212.1| Homo sapiens von Willebrand factor pseudogene (VWFP) on chromosome
           22
          Length = 14575

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 538 acctcaccagcagcaacctc 557
           ||||||||||||||||||||
Sbjct: 168 acctcaccagcagcaacctc 187



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>gb|AF116677.1|AF116677 Homo sapiens PRO1966 mRNA, complete cds
          Length = 1200

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 30  gaagaaggaagtgagaattc 49
           ||||||||||||||||||||
Sbjct: 700 gaagaaggaagtgagaattc 719



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                            
Query: 354      cttttatccagaatcctggtgggcgcggctgactgttccattca 397
                ||||||||| |||||| |||||| |  | |||||||||||||||
Sbjct: 26322080 cttttatcctgaatcccggtgggagacggtgactgttccattca 26322037



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 286      cttgcacatgcaccacaaca 305
                ||||||||||||||||||||
Sbjct: 12640810 cttgcacatgcaccacaaca 12640791



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>gb|AC005846.1| Homo sapiens 12 PAC RPCI3-467F14 (Roswell Park Cancer Institute Human
             PAC Library) complete sequence
          Length = 111904

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 538   acctcaccagcagcaacctc 557
             ||||||||||||||||||||
Sbjct: 94648 acctcaccagcagcaacctc 94667



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>dbj|BS000078.1| Pan troglodytes chromosome 22 clone:PTB-017L22, map 22, complete
             sequences
          Length = 161914

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   aaaaggctacataggatttt 419
             ||||||||||||||||||||
Sbjct: 80448 aaaaggctacataggatttt 80429



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>dbj|AK110771.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-A12, full
           insert sequence
          Length = 852

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 cttgcacatgcaccacaaca 305
           ||||||||||||||||||||
Sbjct: 79  cttgcacatgcaccacaaca 98



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>dbj|AP000657.3| Homo sapiens genomic DNA, chromosome 21 clone:RP11-662K22, complete
             sequence
          Length = 51621

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   aaaaggctacataggatttt 419
             ||||||||||||||||||||
Sbjct: 48289 aaaaggctacataggatttt 48270



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>dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, section 28/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   aaaaggctacataggatttt 419
             ||||||||||||||||||||
Sbjct: 92661 aaaaggctacataggatttt 92642



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>dbj|AP000462.2| Homo sapiens genomic DNA, chromosome 11q clone:B4H11, complete
             sequences
          Length = 114467

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    gaagaaggaagtgagaattc 49
             ||||||||||||||||||||
Sbjct: 36008 gaagaaggaagtgagaattc 35989



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>gb|AC120438.9| Mus musculus chromosome 7, clone RP24-572G2, complete sequence
          Length = 169442

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tctgaagaaggaagtgagaa 46
             ||||||||||||||||||||
Sbjct: 89970 tctgaagaaggaagtgagaa 89951



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>gb|M10321.1|HUMVWFM Human von Willebrand factor mRNA, 3' end
          Length = 6360

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 538 acctcaccagcagcaacctc 557
           ||||||||||||||||||||
Sbjct: 801 acctcaccagcagcaacctc 820



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>gb|M25847.1|HUMVWFA20 Human von Willebrand factor gene, exons 23 and 24
          Length = 1310

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 538 acctcaccagcagcaacctc 557
           ||||||||||||||||||||
Sbjct: 380 acctcaccagcagcaacctc 399



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>emb|AL845352.7| Mouse DNA sequence from clone RP23-29A7 on chromosome 2, complete
              sequence
          Length = 196996

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     taatctgaagaaggaagtga 43
              ||||||||||||||||||||
Sbjct: 111771 taatctgaagaaggaagtga 111790



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>gb|M60676.1|HUMVWFAB Human von Willebrand factor pseudogene corresponding to exons 23
            through 34
          Length = 21033

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 538  acctcaccagcagcaacctc 557
            ||||||||||||||||||||
Sbjct: 1166 acctcaccagcagcaacctc 1185



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>gb|M60675.1|HUMVWFAA Human von Willebrand factor gene, exons 23 through 34
          Length = 21352

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 538  acctcaccagcagcaacctc 557
            ||||||||||||||||||||
Sbjct: 1363 acctcaccagcagcaacctc 1382



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>emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on chromosome 11, complete
              sequence
          Length = 194872

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     ctgaagaaggaagtgagaat 47
              ||||||||||||||||||||
Sbjct: 184713 ctgaagaaggaagtgagaat 184732



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>emb|X04146.1|HSVWFR Human mRNA fragment (5'terminus) for von Willebrand factor (vWF)
          Length = 4429

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 538  acctcaccagcagcaacctc 557
            ||||||||||||||||||||
Sbjct: 3246 acctcaccagcagcaacctc 3265



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>emb|X04385.1|HSVWFR1 Human mRNA for pre-pro-von Willebrand factor
          Length = 8575

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 538  acctcaccagcagcaacctc 557
            ||||||||||||||||||||
Sbjct: 3116 acctcaccagcagcaacctc 3135



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>dbj|AP000548.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:KB556G11
          Length = 128077

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   acctcaccagcagcaacctc 557
             ||||||||||||||||||||
Sbjct: 75240 acctcaccagcagcaacctc 75221



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>dbj|AB017654.1| Homo sapiens genomic DNA, chromosome 11q23.2, clone:KB4H11, complete
             sequence
          Length = 170965

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    gaagaaggaagtgagaattc 49
             ||||||||||||||||||||
Sbjct: 78460 gaagaaggaagtgagaattc 78479


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,807,529
Number of Sequences: 3902068
Number of extensions: 4807529
Number of successful extensions: 80060
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79909
Number of HSP's gapped (non-prelim): 151
length of query: 564
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 541
effective length of database: 17,143,297,704
effective search space: 9274524057864
effective search space used: 9274524057864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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