>SNX11_MOUSE (Q91WL6) Sorting nexin-11|
          Length = 271

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -2

Query: 358 RATPPLPPPFVSGRQSGLSLWYLIMSNAGTAFSLDELVDAASLPIAWTSRRPRIKIGLRP 179
           R + P PP  +S  +  L  W  +M + G +     L+ ++SLP  W   RP   + +  
Sbjct: 189 RRSSPSPP--LSEEKEQLETWAPVMDSEGPSSESPTLLPSSSLPACWDPARPEEGLSVSQ 246

Query: 178 TAR 170
            AR
Sbjct: 247 PAR 249

>ASPP1_HUMAN (Q96KQ4) Apoptosis stimulating of p53 protein 1 (Protein|
           phosphatase 1 regulatory subunit 13B)
          Length = 1090

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +3

Query: 237 AASTSSSKLKAVPALDMMRYQRLSPDCLPLTNGGGSGGVAR-KPASRSFR---DDEGPAA 404
           A S  +  +KAV    ++     SP  LP  +G  S G  + +P S S     + +GPAA
Sbjct: 597 AHSALNKSVKAVYGKPVLPSGSTSPSPLPFLHGSLSTGTPQPQPPSESTEKEPEQDGPAA 656

Query: 405 ATDGSRVAS 431
             DGS V S
Sbjct: 657 PADGSTVES 665

>SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)|
          Length = 1845

 Score = 25.4 bits (54), Expect(2) = 2.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 203 THQNWPPANRSRRQVPSSCAEQSLSSPSPVRLHGTNKRRTR 81
           TH+  P A+RSRR+ PS     +   P+ V   GT +R TR
Sbjct: 266 THETRPSASRSRRRSPSPRRPATPPKPAAV---GT-RRSTR 302



 Score = 24.3 bits (51), Expect(2) = 2.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 394 PSSSLKDLEAGLRATPPLPPPFVSGRQS 311
           P+SS     A  +  PP PPP    R+S
Sbjct: 236 PASSSNSKHAPAKMPPPPPPPKAPARKS 263

>PPE30_MYCTU (P0A692) Hypothetical PPE-family protein PPE30|
          Length = 463

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 29/89 (32%), Positives = 38/89 (42%)
 Frame = +3

Query: 96  VRSVQTNGRGRRE*LLSAGGRNLPSRAVGRRPILMRGLLEVHAIGRDAASTSSSKLKAVP 275
           +RS  ++G G     +SAG     S  VG   +         AI   AA  SS+ L+AVP
Sbjct: 292 LRSAISSGLGSTAPAISAGASQAGS--VGGMSVPPSWAAATPAIRTVAAVFSSTGLQAVP 349

Query: 276 ALDMMRYQRLSPDCLPLTNGGGSGGVARK 362
           A  +     LS   L    GG  GG A +
Sbjct: 350 AAAISEGSLLSQMALASVAGGALGGAAAR 378

>PPE30_MYCBO (P0A693) Hypothetical PPE-family protein PPE30|
          Length = 463

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 29/89 (32%), Positives = 38/89 (42%)
 Frame = +3

Query: 96  VRSVQTNGRGRRE*LLSAGGRNLPSRAVGRRPILMRGLLEVHAIGRDAASTSSSKLKAVP 275
           +RS  ++G G     +SAG     S  VG   +         AI   AA  SS+ L+AVP
Sbjct: 292 LRSAISSGLGSTAPAISAGASQAGS--VGGMSVPPSWAAATPAIRTVAAVFSSTGLQAVP 349

Query: 276 ALDMMRYQRLSPDCLPLTNGGGSGGVARK 362
           A  +     LS   L    GG  GG A +
Sbjct: 350 AAAISEGSLLSQMALASVAGGALGGAAAR 378

>YMF9_YEAST (Q04958) Hypothetical UPF0028 protein YML059c|
          Length = 1679

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +3

Query: 285 MMRYQRLSPDCLPLTNGGGSGGVARKPASRSFRDDEGPAAATDGSRVASYLAASQADTK 461
           + +Y+RL+P+ LPL N G SG  A   A+ +   +  PA  +  +  +S + + +   K
Sbjct: 129 LSQYKRLTPEFLPLENTGKSGSSANINAASTQSANAPPAIGSSTTGASSIIDSKKHSLK 187

>PCD16_HUMAN (Q96JQ0) Protocadherin-16 precursor (Dachsous 1) (Cadherin-19)|
            (Fibroblast cadherin 1)
          Length = 3298

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 412  SVAAAGPSSSLKDLEAGLRAT---PPLPPPFVSGRQSGLSL 299
            S+AA GP S ++    GL  T   PP P  +  GR++GL L
Sbjct: 3059 SLAARGPDSGIQQDADGLSDTSCEPPAPDTWYKGRKAGLLL 3099

>GUDB_BACSU (P50735) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)|
           (NAD-GDH)
          Length = 426

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 243 STSSSKLKAVPALDMMRYQRLSPDCLPLTNGGGSGGVARKPASRSFRDDE 392
           + +  ++KAV AL +  +  L    + L  GGG GG+   P   SFR+ E
Sbjct: 87  NVTEKEVKAVKALSI--WMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELE 134

>YL37_CAEEL (P34428) Hypothetical protein F44B9.7|
          Length = 466

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 206 PPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQPGLPPA 325
           PP GP  + G ++ +       +R G    P   PG+PP+
Sbjct: 49  PPGGPPPFMGIQIKQEPMWSQENRYGMQAGPSGMPGMPPS 88

>YNE1_CAEEL (P30640) Hypothetical protein R08D7.1|
          Length = 458

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 245 RRGVPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSSPSPVRLHG--TNKRRTRNLQ 72
           RR  P  R D  ++   N PP NRSRR   +S   +  SSP+  R     +  R++R ++
Sbjct: 177 RRSPPRTRRDRHDS--DNSPPRNRSRRDSDNSPPRRRPSSPARRRKDDDLSPPRKSRKIE 234

Query: 71  E 69
           E
Sbjct: 235 E 235

>DYH11_HUMAN (Q96DT5) Ciliary dynein heavy chain 11 (Axonemal beta dynein heavy|
            chain 11)
          Length = 4523

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -2

Query: 406  AAAGPSSSLKDLEAGLRATPPLPPPFVSGRQSGLSLWYLIMSNAGTAFSLDELVDAASL 230
            A  G   ++KD+ A LRA   L  P +  R      W+ +M   G  F ++E    A L
Sbjct: 1384 AYTGLEGTVKDMTASLRAITELQSPALRDRH-----WHQLMKAIGVKFLINEATTLADL 1437

>VGLC_PRVIF (P06024) Glycoprotein GIII precursor|
          Length = 479

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 415 PSVAAAGPSSSLKDLEAGLRATPPLPPPFVSGRQ 314
           P+ A A P       EAG  +TPP+PPP VS R+
Sbjct: 52  PTPAPASP-------EAGAVSTPPVPPPSVSRRK 78

>PAPPA_HUMAN (Q13219) Pappalysin-1 precursor (EC 3.4.24.79)|
           (Pregnancy-associated plasma protein-A) (PAPP-A)
           (Insulin-like growth factor-dependent IGF-binding
           protein 4 protease) (IGF-dependent IGFBP-4 protease)
           (IGFBP-4ase)
          Length = 1628

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 442 AARYEATREPSVAAAGPSSSLKDLEAGLRATPPLPPP 332
           A R      P   AAGP++       G RA+PP PPP
Sbjct: 28  ARRDPRAGRPPRPAAGPATCATRAARGRRASPPPPPP 64

>RGS14_HUMAN (O43566) Regulator of G-protein signaling 14 (RGS14)|
          Length = 594

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
 Frame = -2

Query: 412 SVAAAGPSSSLKDLEAGL---RATPPLPPPFVSGRQSGLSLWYLIMSNAGTAFSLDE--L 248
           S+A A P  +++D+ AG+   R +  L      G +       L++    T  +  E  L
Sbjct: 314 SLALARPGLTIRDMLAGICEKRGSLYLTSSLPGGNEQKA----LVLDQDCTVLADQEVRL 369

Query: 247 VDAASLPIAWTSRRPRIKIGLRPTAREGRFLPPALSNHSLLPLPFV 110
            +  +  +  T+    ++I  +PT R    L P L  H L PL  V
Sbjct: 370 ENRITFELELTALERVVRISAKPTKRLQEALQPILEKHGLSPLEVV 415

>OBF1_MOUSE (Q64693) POU domain class 2, associating factor 1 (B-cell-specific|
           coactivator OBF-1) (OCT binding factor 1) (BOB-1) (BOB1)
           (OCA-B)
          Length = 256

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 179 WPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQP 310
           W ++      P  PR +QG RV E ++   R + GH  V  A P
Sbjct: 3   WQKSTAPEQAPAPPRPYQGVRVKEPVKELLRRKRGHTSVGAAGP 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,004,031
Number of Sequences: 219361
Number of extensions: 1270913
Number of successful extensions: 5697
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5688
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)