ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart23h01 |
|---|---|
| Clone Library Name | barley_pub |
>YPT2_ECOLI (Q99390) Hypothetical 31.7 kDa protein in traX-finO intergenic| region (ORFC) Length = 286 Score = 34.7 bits (78), Expect = 0.16 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = +2 Query: 308 RLSDGRHLAYHESGVPREQAKHKIVFV-HGFDSCRYDALRVSPELAQELGIYIVSFDRPG 484 +LS+G L + VP KH ++ + HGF R L E G ++FD G Sbjct: 7 KLSEGIALTFR---VPEGNIKHPLIILCHGFCGIRNVLLPCFANAFTEAGFATITFDYRG 63 Query: 485 YGESD 499 +GESD Sbjct: 64 FGESD 68
>YPT1_ECOLI (P29368) Hypothetical 31.7 kDa protein in traX-finO intergenic| region Length = 286 Score = 34.7 bits (78), Expect = 0.16 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = +2 Query: 308 RLSDGRHLAYHESGVPREQAKHKIVFV-HGFDSCRYDALRVSPELAQELGIYIVSFDRPG 484 +LS+G L + VP KH ++ + HGF R L E G ++FD G Sbjct: 7 KLSEGIALTFR---VPEGNIKHPLIILCHGFCGIRNVLLPCFANAFTEAGFATITFDYRG 63 Query: 485 YGESD 499 +GESD Sbjct: 64 FGESD 68
>PIP_LACHE (P52278) Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl| aminopeptidase) (PAP) Length = 294 Score = 33.1 bits (74), Expect = 0.46 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +2 Query: 350 VPREQAKHKIVFVHGFDSCRYDALRVSPELAQELGIYIVSFDRPGYGES---DPHP 508 V K +V +HG ++ V ELAQ+ G I+ +D+ G GES D HP Sbjct: 20 VGERSEKPPLVLLHGGPGSSHNYFEVLDELAQKDGRRIIMYDQLGCGESSIPDDHP 75
>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 7389 Score = 32.3 bits (72), Expect = 0.78 Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Frame = +1 Query: 115 AVVRLRQRHESPAASGRSRRLRYS------QKASPPCIRVPACTSVPSASGSASKNLRIP 276 A R R R P++ G S S Q ASPP VPA S P + LR+P Sbjct: 7217 AAFRPRGRRSRPSSRGASPNRSTSGSSHACQAASPP---VPAAASTPKGTPIQGSKLRLP 7273 Query: 277 RRPSG---HRAEDQA 312 SG H ED A Sbjct: 7274 GYLSGKGFHSGEDSA 7288
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 8/40 (20%) Frame = -3 Query: 357 LGTPDSW*AKCLPSLSLILG--------AVTGGPPGDPQV 262 LG P SW CLP L L+LG VT PGDP + Sbjct: 4 LGYPRSWSCHCLPVLILLLGIGHGPWVEGVTHYKPGDPVI 43
>THIC_COREF (Q8FPT3) Thiamine biosynthesis protein thiC| Length = 580 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 329 LAYHESGVPREQAKHKIVFVHGFDSC--RYDALRVSPELAQELGIYIVSFDRPGYGESD 499 +AYH+ +P E AK H C ++ ++R+S ++ G I PG G SD Sbjct: 504 IAYHDETLPAEPAKT----AHFCSMCGPKFCSMRISQDIRDMFGEQIAELGMPGVGASD 558
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 8/40 (20%) Frame = -3 Query: 357 LGTPDSW*AKCLPSLSLILG--------AVTGGPPGDPQV 262 LG P SW CLP L L+LG VT PGDP + Sbjct: 4 LGHPRSWSCHCLPVLILLLGIGHGPRVEGVTHYKPGDPVI 43
>DEH1_MORSB (Q01398) Haloacetate dehalogenase H-1 (EC 3.8.1.3)| Length = 294 Score = 31.6 bits (70), Expect = 1.3 Identities = 22/61 (36%), Positives = 31/61 (50%) Frame = +2 Query: 317 DGRHLAYHESGVPREQAKHKIVFVHGFDSCRYDALRVSPELAQELGIYIVSFDRPGYGES 496 DG +AY SG ++ +HGF R RV+P+LA+ +V D GYG+S Sbjct: 14 DGVDIAYTVSG-----EGPPVLMLHGFPQNRAMWARVAPQLAEH--HTVVCADLRGYGDS 66 Query: 497 D 499 D Sbjct: 67 D 67
>PIP_ARATH (P93732) Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl| aminopeptidase) (PAP) Length = 329 Score = 30.8 bits (68), Expect = 2.3 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = +2 Query: 287 PVTAPRIRLSDGRHLAYHESGVPREQAKHKIVFVHGFD---SCRYDALRVSPELAQELGI 457 P ++ +++SD L + +SG P H +VF+HG + + PE + Sbjct: 21 PYSSGNLKVSDVHTLYWEQSGKPDG---HPVVFLHGGPGGGTAPSNRRFFDPEFYR---- 73 Query: 458 YIVSFDRPGYGESDPH 505 IV FD+ G G+S PH Sbjct: 74 -IVLFDQRGAGKSTPH 88
>LIFO1_BURCE (P22089) Lipase chaperone (Lipase foldase) (Lipase helper protein)| (Lipase activator protein) (Lipase modulator) Length = 344 Score = 30.8 bits (68), Expect = 2.3 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%) Frame = +1 Query: 79 RASSCHGRAGREAVVRLRQ-----RHESPAASGRSRRLRYSQ--KASPPCIRVPACTSV- 234 R + +G G A+ + RH ASG ++ A+PP VPA TS+ Sbjct: 12 RRAVVYGAVGLAAIAGVAMWSGAGRHGGTGASGEPPDASAARGPAAAPPQAAVPASTSLP 71 Query: 235 PSASGSASKNLRIPRRPSGHRAEDQA 312 PS +GS++ R+P GH A+ +A Sbjct: 72 PSLAGSSAP--RLPLDAGGHLAKARA 95
>HYES_HUMAN (P34913) Epoxide hydrolase 2 (EC 3.3.2.3) (Soluble epoxide| hydrolase) (SEH) (Epoxide hydratase) (Cytosolic epoxide hydrolase) (CEH) Length = 555 Score = 30.8 bits (68), Expect = 2.3 Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Frame = +2 Query: 248 APPPKTCGSPG---GPPVTAPRIRLSDGRHLAYHESGVPREQAKHKIVFVHGFDSCRYDA 418 AP P +C G PR+RL H SG + HGF Y Sbjct: 226 APLPTSCNPSDMSHGYVTVKPRVRL----HFVELGSGPA-------VCLCHGFPESWYSW 274 Query: 419 LRVSPELAQELGIYIVSFDRPGYGESDPHP 508 P LAQ G +++ D GYGES P Sbjct: 275 RYQIPALAQA-GYRVLAMDMKGYGESSAPP 303
>THIC_CORGL (Q8NQW7) Thiamine biosynthesis protein thiC| Length = 587 Score = 30.4 bits (67), Expect = 3.0 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Frame = +2 Query: 329 LAYHESGVPREQAKHKIVFVHGFDSC--RYDALRVSPELAQELGIYIVSFDRPGYGES 496 +AYH+ +P E AK H C ++ ++R+S ++ G I PG G+S Sbjct: 504 IAYHDETLPAEPAKT----AHFCSMCGPKFCSMRISQDIRDMFGDQIAELGMPGVGDS 557
>SUZ12_DROME (Q9NJG9) Polycomb protein Su(z)12 (Suppressor 12 of zeste protein)| Length = 900 Score = 30.4 bits (67), Expect = 3.0 Identities = 16/58 (27%), Positives = 29/58 (50%) Frame = +1 Query: 121 VRLRQRHESPAASGRSRRLRYSQKASPPCIRVPACTSVPSASGSASKNLRIPRRPSGH 294 V + ++ E P + L+ QK +PP + ++ S SGS S +++ P+R H Sbjct: 673 VGMHKKQEDP------KTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPKRMPAH 724
>PRM2_BOVIN (P19782) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 112 Score = 30.4 bits (67), Expect = 3.0 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Frame = +1 Query: 106 GREAVVRLRQRHESPAASGRSRRLRYSQ------KASPPCIRVPACTSVPSASGSASKNL 267 GR R RH S + R RR R + A PPC +P T S GS + + Sbjct: 43 GRTHRGRYHYRHRSHTRAYRRRRRRACRHRSRRGAAGPPCAPIPG-TPQASRQGSGCRRM 101 Query: 268 RIPRRPSGHR 297 R RR G + Sbjct: 102 RRRRRRCGRQ 111
>ATS8_MOUSE (P57110) ADAMTS-8 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 8) (ADAM-TS 8) (ADAM-TS8) (METH-2) Length = 905 Score = 30.4 bits (67), Expect = 3.0 Identities = 26/72 (36%), Positives = 30/72 (41%) Frame = +2 Query: 221 LALLYRQLQAPPPKTCGSPGGPPVTAPRIRLSDGRHLAYHESGVPREQAKHKIVFVHGFD 400 L LL QL PPP CG+P GP A L L G E A H F GF Sbjct: 13 LLLLLLQLP-PPPLVCGAPAGPGTGAQASELVVPTRL----PGSASELAFHLSAFGQGF- 66 Query: 401 SCRYDALRVSPE 436 LR++P+ Sbjct: 67 -----VLRLAPD 73
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 29.6 bits (65), Expect = 5.0 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 14/78 (17%) Frame = +1 Query: 109 REAVVRLRQRHESPAASGRSRRLRYSQ--------------KASPPCIRVPACTSVPSAS 246 R+A + R R S S RSR YS+ +A P P P + Sbjct: 752 RQAPAQQRGRQRSYTPSDRSRSRSYSRSRSPRGRSYTRSPDRAGPQASTAPRSGGPPRKA 811 Query: 247 GSASKNLRIPRRPSGHRA 300 GS + R PSG R+ Sbjct: 812 GSVDNRSPLSRSPSGSRS 829
>KJ45_SCHPO (O74526) Probable serine/threonine-protein kinase C70.05c (EC| 2.7.11.1) Length = 781 Score = 29.6 bits (65), Expect = 5.0 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = +1 Query: 139 HESPAASGRSRRLRYSQ-----KASPPCIRVPACTSVPSASGSASKNLRIPRRPSGHRAE 303 H S +G+S + SQ K SPP R A VP + SAS NL + P+G+ E Sbjct: 166 HPSSPVNGKSSDIHKSQSYQHLKNSPPNSRT-ARKPVPRRANSASHNLGSTKSPNGNAKE 224
>CUT2_CAEEL (P34682) Cuticlin-2 precursor| Length = 231 Score = 29.3 bits (64), Expect = 6.6 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +2 Query: 251 PPPKTCGSPGGPPVTAPRIRL 313 PPP CG+P PP+ PR L Sbjct: 35 PPPCGCGAPALPPLQLPRFEL 55
>MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle| myosin heavy chain IIc) (NMHC II-C) Length = 1995 Score = 29.3 bits (64), Expect = 6.6 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = -1 Query: 221 AGTRMQ-GGEAFWLYRSRRERPEAAGLSCRWRRRTTASRPALPWQEEARQVQARQSE 54 AG R Q EA R+ RE A WRRR AL EEAR+ AR++E Sbjct: 1363 AGLREQLEEEAAARERAGRELQTAQAQLSEWRRRQEEEAGALEAGEEARRRAAREAE 1419
>DLGP3_RAT (P97838) Disks large-associated protein 3 (DAP-3)| (SAP90/PSD-95-associated protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3) Length = 977 Score = 29.3 bits (64), Expect = 6.6 Identities = 12/16 (75%), Positives = 12/16 (75%) Frame = +2 Query: 254 PPKTCGSPGGPPVTAP 301 PP T GSPG PPV AP Sbjct: 747 PPATDGSPGPPPVPAP 762
>TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase| III alpha) Length = 1250 Score = 28.9 bits (63), Expect = 8.6 Identities = 16/55 (29%), Positives = 21/55 (38%) Frame = -3 Query: 483 PGRSKDTM*IPSSCASSGDTRRASYLHESNPWTKTILCLACSLGTPDSW*AKCLP 319 P KD + C + GD R S P+ + + GTP W CLP Sbjct: 694 PTECKDASVLDECCPTCGDGYRMLKFRLSTPYYRGVF------GTPSGWYKTCLP 742
>ACOC_PSEPU (Q59695) Dihydrolipoyllysine-residue acetyltransferase component of| acetoin cleaving system (EC 2.3.1.12) (Acetoin dehydrogenase E2 component) (Dihydrolipoamide acetyltransferase component of acetoin cleaving system) Length = 370 Score = 28.9 bits (63), Expect = 8.6 Identities = 23/67 (34%), Positives = 32/67 (47%) Frame = +2 Query: 296 APRIRLSDGRHLAYHESGVPREQAKHKIVFVHGFDSCRYDALRVSPELAQELGIYIVSFD 475 AP+ GR L + E G + +V VHGF + L P LA E + ++ D Sbjct: 112 APQKAEVGGRLLRWFELG---GEGGTPLVLVHGFGGDLNNWLFNHPALAAERRV--IALD 166 Query: 476 RPGYGES 496 PG+GES Sbjct: 167 LPGHGES 173
>MESD2_HUMAN (Q14696) Mesoderm development candidate 2 (NY-REN-61 antigen)| Length = 234 Score = 28.9 bits (63), Expect = 8.6 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = +2 Query: 185 AKRLPRLAFVFLLA--LLYRQLQAPPPKTC---GSPGGPPVTAPRIRLSDGRHLAYHESG 349 A R R A V L A LL L PPP +C GSPG P + P R Y+++ Sbjct: 3 ASRWARKAVVLLCASDLLLLLLLLPPPGSCAAEGSPGTPDESTPPPRKKKKDIRDYNDAD 62 Query: 350 VPR 358 + R Sbjct: 63 MAR 65
>YAC3_SCHPO (Q09817) Hypothetical protein C16C9.03 in chromosome I| Length = 498 Score = 28.9 bits (63), Expect = 8.6 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = -3 Query: 399 SNPWTKTILCLACSLGTPDSW*AKCLPSLSLILGAVTGGP 280 S P TILC C + TP + A C+ + + +G P Sbjct: 15 SEPIASTILCCECGVPTPPNAAAMCMDCIKMTTDITSGIP 54
>H11_HUMAN (Q02539) Histone H1.1| Length = 214 Score = 28.9 bits (63), Expect = 8.6 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = +1 Query: 154 ASGRSRRLRYSQKASPPCIRVPACTSVPSASGSASKNLRIPR 279 A+G S++L+ + AS ++ P P+A+ +SKN + P+ Sbjct: 131 ATGASKKLKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPK 172 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,656,334 Number of Sequences: 219361 Number of extensions: 1547319 Number of successful extensions: 5733 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 5256 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5724 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
