ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart23g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467879.1| Oryza sativa (japonica cultivar-group), mRNA 111 4e-22
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 111 4e-22
3dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic D... 111 4e-22
4dbj|AK070419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 4e-22
5gb|AF325723.1|AF325723 Pennisetum ciliare phosphate-induced prot... 98 6e-18
6gb|AY105815.1| Zea mays PCO102946 mRNA sequence 94 1e-16
7dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 44 0.083
8gb|AE017221.1| Thermus thermophilus HB27, complete genome 44 0.083
9dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 0.33
10gb|AY105324.1| Zea mays PCO143177 mRNA sequence 42 0.33
11emb|AM085146.1| Magnetospirillum gryphiswaldense magnetosome island 40 1.3
12gb|AE004345.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 1.3
13dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 1.3
14gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 1.3
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.3
16dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.3
17dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.3
18gb|DQ021158.1| Vibrio cholerae isolate #75 maltodextrin phosphor... 40 1.3
19gb|DQ021157.1| Vibrio cholerae isolate 66-2 (Makassar 759) malto... 40 1.3
20gb|DQ021156.1| Vibrio cholerae isolate 4808 maltodextrin phospho... 40 1.3
21gb|DQ021155.1| Vibrio cholerae isolate E506 maltodextrin phospho... 40 1.3
22gb|DQ021154.1| Vibrio cholerae isolate E9120 maltodextrin phosph... 40 1.3
23gb|DQ021153.1| Vibrio cholerae isolate 2100 maltodextrin phospho... 40 1.3
24gb|DQ021152.1| Vibrio cholerae isolate NCTC 9420 maltodextrin ph... 40 1.3
25gb|DQ021151.1| Vibrio cholerae isolate 370-94 maltodextrin phosp... 40 1.3
26gb|DQ021148.1| Vibrio cholerae isolate 141-94 maltodextrin phosp... 40 1.3
27gb|DQ021147.1| Vibrio cholerae isolate 1085-93 maltodextrin phos... 40 1.3
28gb|DQ021146.1| Vibrio cholerae isolate NCTC 5395 maltodextrin ph... 40 1.3
29gb|DQ021145.1| Vibrio cholerae isolate M4287/77 maltodextrin pho... 40 1.3
30gb|DQ021144.1| Vibrio cholerae isolate SIMP/77 maltodextrin phos... 40 1.3
31gb|DQ021143.1| Vibrio cholerae isolate 395 maltodextrin phosphor... 40 1.3
32ref|XM_509473.1| PREDICTED: Pan troglodytes similar to CG1842-PA... 38 5.1
33ref|XM_520017.1| PREDICTED: Pan troglodytes similar to vacuolar ... 38 5.1
34gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 38 5.1
35gb|AF445417.1| Homo sapiens FP3517 mRNA, complete cds 38 5.1
36gb|BC050712.1| Homo sapiens vacuolar protein sorting 28 homolog ... 38 5.1
37gb|BC006485.1| Homo sapiens vacuolar protein sorting 28 homolog ... 38 5.1
38gb|BC050713.2| Homo sapiens vacuolar protein sorting 28 homolog ... 38 5.1
39gb|BC050438.1| Homo sapiens vacuolar protein sorting 28 homolog ... 38 5.1
40gb|BC019321.1| Homo sapiens vacuolar protein sorting 28 homolog ... 38 5.1
41ref|NM_183057.1| Homo sapiens vacuolar protein sorting 28 homolo... 38 5.1
42ref|NM_016208.2| Homo sapiens vacuolar protein sorting 28 homolo... 38 5.1
43ref|XM_962463.1| PREDICTED: Tribolium castaneum similar to DnaJ ... 38 5.1
44ref|XM_971038.1| PREDICTED: Tribolium castaneum similar to DnaJ ... 38 5.1
45emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 38 5.1
46emb|AL645615.14| Mouse DNA sequence from clone RP23-395B22 on ch... 38 5.1
47emb|CR615683.1| full-length cDNA clone CS0DI040YD08 of Placenta ... 38 5.1
48emb|CR610765.1| full-length cDNA clone CS0DI054YG02 of Placenta ... 38 5.1
49dbj|AK091979.1| Homo sapiens cDNA FLJ34660 fis, clone KIDNE20188... 38 5.1
50dbj|AK091526.1| Homo sapiens cDNA FLJ34207 fis, clone FCBBF30201... 38 5.1
51emb|CR603930.1| full-length cDNA clone CS0DL001YL06 of B cells (... 38 5.1
52dbj|AK090942.1| Homo sapiens cDNA FLJ33623 fis, clone BRAMY20217... 38 5.1
53emb|CR602682.1| full-length cDNA clone CS0DC017YB14 of Neuroblas... 38 5.1
54emb|CR600507.1| full-length cDNA clone CS0DE012YD05 of Placenta ... 38 5.1
55emb|CR593237.1| full-length cDNA clone CS0DB003YD09 of Neuroblas... 38 5.1
56emb|CR592521.1| full-length cDNA clone CS0DF006YB03 of Fetal bra... 38 5.1
57emb|CR591710.1| full-length cDNA clone CS0DI029YA05 of Placenta ... 38 5.1
58dbj|AB168525.1| Macaca fascicularis testis cDNA clone: QtsA-1278... 38 5.1
59gb|AF316887.1|AF316887 Homo sapiens vacuolar sorting protein 28 ... 38 5.1
60dbj|AB095937.2| Homo sapiens mRNA for KIAA2017 protein, partial cds 38 5.1
61gb|AC079315.30| Homo sapiens 12 BAC RP11-380L11 (Roswell Park Ca... 38 5.1
62gb|AF205589.5| Homo sapiens chromosome 8 clone CTA-393G12 map qt... 38 5.1
63gb|DQ000513.1| Synthetic construct clone PSF:103963 VPS28 gene, ... 38 5.1
64dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 5.1
65gb|AE005090.1| Halobacterium sp. NRC-1 section 121 of 170 of the... 38 5.1
66dbj|AK026865.1| Homo sapiens cDNA: FLJ23212 fis, clone ADSU01518... 38 5.1
67gb|AF182844.1|AF182844 Homo sapiens VPS28 protein mRNA, complete... 38 5.1
68dbj|D38508.1|ARGIFO1217 Arthrobacter globiformis gene for copper... 38 5.1 
>ref|XM_467879.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 936

 Score =  111 bits (56), Expect = 4e-22
 Identities = 80/88 (90%)
 Strand = Plus / Plus

                                                                       
Query: 25  tgcgtcgccacgaggcggctcacggcgctggtgcaggacccgcccatcaccatgaagtac 84
           ||||||||  |||||  |||||| |||||||||||||||| ||||||||| |||| ||||
Sbjct: 64  tgcgtcgcgtcgaggaagctcaccgcgctggtgcaggaccagcccatcacaatgacgtac 123

                                       
Query: 85  cacaagggcgcgctcctctccggccgca 112
           ||||||||||||||||||||||||||||
Sbjct: 124 cacaagggcgcgctcctctccggccgca 151
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 4e-22
 Identities = 80/88 (90%)
 Strand = Plus / Plus

                                                                            
Query: 25       tgcgtcgccacgaggcggctcacggcgctggtgcaggacccgcccatcaccatgaagtac 84
                ||||||||  |||||  |||||| |||||||||||||||| ||||||||| |||| ||||
Sbjct: 31870081 tgcgtcgcgtcgaggaagctcaccgcgctggtgcaggaccagcccatcacaatgacgtac 31870140

                                            
Query: 85       cacaagggcgcgctcctctccggccgca 112
                ||||||||||||||||||||||||||||
Sbjct: 31870141 cacaagggcgcgctcctctccggccgca 31870168
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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0471A11
          Length = 157740

 Score =  111 bits (56), Expect = 4e-22
 Identities = 80/88 (90%)
 Strand = Plus / Plus

                                                                         
Query: 25    tgcgtcgccacgaggcggctcacggcgctggtgcaggacccgcccatcaccatgaagtac 84
             ||||||||  |||||  |||||| |||||||||||||||| ||||||||| |||| ||||
Sbjct: 31082 tgcgtcgcgtcgaggaagctcaccgcgctggtgcaggaccagcccatcacaatgacgtac 31141

                                         
Query: 85    cacaagggcgcgctcctctccggccgca 112
             ||||||||||||||||||||||||||||
Sbjct: 31142 cacaagggcgcgctcctctccggccgca 31169
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>dbj|AK070419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049J22, full
           insert sequence
          Length = 1187

 Score =  111 bits (56), Expect = 4e-22
 Identities = 80/88 (90%)
 Strand = Plus / Plus

                                                                       
Query: 25  tgcgtcgccacgaggcggctcacggcgctggtgcaggacccgcccatcaccatgaagtac 84
           ||||||||  |||||  |||||| |||||||||||||||| ||||||||| |||| ||||
Sbjct: 128 tgcgtcgcgtcgaggaagctcaccgcgctggtgcaggacctgcccatcacaatgacgtac 187

                                       
Query: 85  cacaagggcgcgctcctctccggccgca 112
           ||||||||||||||||||||||||||||
Sbjct: 188 cacaagggcgcgctcctctccggccgca 215
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>gb|AF325723.1|AF325723 Pennisetum ciliare phosphate-induced protein 1-like protein mRNA,
           complete cds
          Length = 1160

 Score = 97.6 bits (49), Expect = 6e-18
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                       
Query: 36  gaggcggctcacggcgctggtgcaggacccgcccatcaccatgaagtaccacaagggcgc 95
           |||||||||||| ||||| |||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 157 gaggcggctcaccgcgctcgtgcaggagccggccatcaccatgaagtaccacaggggcgc 216

                            
Query: 96  gctcctctccggccgca 112
           |||||| || |||||||
Sbjct: 217 gctcctgtcgggccgca 233
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>gb|AY105815.1| Zea mays PCO102946 mRNA sequence
          Length = 1238

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                       
Query: 23  cctgcgtcgccacgaggcggctcacggcgctggtgcaggacccgcccatcaccatgaagt 82
           ||||| |||||  |||| ||||||| |||||||||||||| ||| |||| ||||||||||
Sbjct: 153 cctgcctcgccgggaggaggctcaccgcgctggtgcaggagccggccataaccatgaagt 212

                              
Query: 83  accacaagggcgcgctcct 101
           |||||||||||||||||||
Sbjct: 213 accacaagggcgcgctcct 231
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 44.1 bits (22), Expect = 0.083
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 32     ccacgaggcggctcacggcgct 53
              ||||||||||||||||||||||
Sbjct: 653023 ccacgaggcggctcacggcgct 653044
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 44.1 bits (22), Expect = 0.083
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 32     ccacgaggcggctcacggcgct 53
              ||||||||||||||||||||||
Sbjct: 315202 ccacgaggcggctcacggcgct 315223
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 0.33
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 42      gctcacggcgctggtgcagga 62
               |||||||||||||||||||||
Sbjct: 6979022 gctcacggcgctggtgcagga 6979042
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>gb|AY105324.1| Zea mays PCO143177 mRNA sequence
          Length = 1439

 Score = 42.1 bits (21), Expect = 0.33
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 89   agggcgcgctcctctccggcc 109
            |||||||||||||||||||||
Sbjct: 1034 agggcgcgctcctctccggcc 1014
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>emb|AM085146.1| Magnetospirillum gryphiswaldense magnetosome island
          Length = 130000

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ggacccgcccatcaccatga 79
             ||||||||||||||||||||
Sbjct: 24129 ggacccgcccatcaccatga 24110
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>gb|AE004345.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 2
            of 93 of the complete chromosome
          Length = 15666

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   ctgcgtcgccacgaggcggc 43
            ||||||||||||||||||||
Sbjct: 1372 ctgcgtcgccacgaggcggc 1391
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ggacccgcccatcaccatga 79
              ||||||||||||||||||||
Sbjct: 420603 ggacccgcccatcaccatga 420622
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 77      tgaagtaccacaagggcgcg 96
               ||||||||||||||||||||
Sbjct: 1931333 tgaagtaccacaagggcgcg 1931352
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 93      cgcgctcctctccggccgca 112
               ||||||||||||||||||||
Sbjct: 3573633 cgcgctcctctccggccgca 3573614
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>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0577B11
          Length = 180355

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    cgcgctcctctccggccgca 112
             ||||||||||||||||||||
Sbjct: 52139 cgcgctcctctccggccgca 52120
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>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0672D01
          Length = 146954

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     cgcgctcctctccggccgca 112
              ||||||||||||||||||||
Sbjct: 129350 cgcgctcctctccggccgca 129331
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>gb|DQ021158.1| Vibrio cholerae isolate #75 maltodextrin phosphorylase (malP) gene,
           partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021157.1| Vibrio cholerae isolate 66-2 (Makassar 759) maltodextrin
           phosphorylase (malP) gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021156.1| Vibrio cholerae isolate 4808 maltodextrin phosphorylase (malP)
           gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021155.1| Vibrio cholerae isolate E506 maltodextrin phosphorylase (malP)
           gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021154.1| Vibrio cholerae isolate E9120 maltodextrin phosphorylase (malP)
           gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021153.1| Vibrio cholerae isolate 2100 maltodextrin phosphorylase (malP)
           gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021152.1| Vibrio cholerae isolate NCTC 9420 maltodextrin phosphorylase (malP)
           gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021151.1| Vibrio cholerae isolate 370-94 maltodextrin phosphorylase (malP)
           gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021148.1| Vibrio cholerae isolate 141-94 maltodextrin phosphorylase (malP)
           gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021147.1| Vibrio cholerae isolate 1085-93 maltodextrin phosphorylase (malP)
           gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021146.1| Vibrio cholerae isolate NCTC 5395 maltodextrin phosphorylase (malP)
           gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021145.1| Vibrio cholerae isolate M4287/77 maltodextrin phosphorylase (malP)
           gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021144.1| Vibrio cholerae isolate SIMP/77 maltodextrin phosphorylase (malP)
           gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>gb|DQ021143.1| Vibrio cholerae isolate 395 maltodextrin phosphorylase (malP) gene,
           partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  ctgcgtcgccacgaggcggc 43
           ||||||||||||||||||||
Sbjct: 740 ctgcgtcgccacgaggcggc 759
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>ref|XM_509473.1| PREDICTED: Pan troglodytes similar to CG1842-PA (LOC452356), mRNA
          Length = 1611

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 43  ctcacggcgctggtgcagg 61
           |||||||||||||||||||
Sbjct: 958 ctcacggcgctggtgcagg 976
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>ref|XM_520017.1| PREDICTED: Pan troglodytes similar to vacuolar protein sorting 28
           isoform 2; yeast class E protein Vps28p homolog
           (LOC464463), mRNA
          Length = 984

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 413 aggaccggcccatcaccatcaaggacgacaagggc 447
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 90     gggcgcgctcctctccggccgca 112
              |||||||||||||| ||||||||
Sbjct: 770493 gggcgcgctcctcttcggccgca 770515
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>gb|AF445417.1| Homo sapiens FP3517 mRNA, complete cds
          Length = 1649

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 458 aggaccggcccatcaccatcaaggacgacaagggc 492
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>gb|BC050712.1| Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae),
            mRNA (cDNA clone IMAGE:5188705)
          Length = 1872

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 59   aggacccgcccatcaccatgaagtaccacaagggc 93
            |||||| |||||||||||| ||| || ||||||||
Sbjct: 1197 aggaccggcccatcaccatcaaggacgacaagggc 1231
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>gb|BC006485.1| Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae),
           transcript variant 1, mRNA (cDNA clone MGC:695
           IMAGE:3535787), complete cds
          Length = 918

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 380 aggaccggcccatcaccatcaaggacgacaagggc 414
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>gb|BC050713.2| Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae),
           transcript variant 2, mRNA (cDNA clone MGC:60323
           IMAGE:5741129), complete cds
          Length = 1127

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 392 aggaccggcccatcaccatcaaggacgacaagggc 426
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>gb|BC050438.1| Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae),
           mRNA (cDNA clone IMAGE:5770193)
          Length = 2148

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 898 aggaccggcccatcaccatcaaggacgacaagggc 932
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>gb|BC019321.1| Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae),
           transcript variant 1, mRNA (cDNA clone MGC:4362
           IMAGE:2822758), complete cds
          Length = 918

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 380 aggaccggcccatcaccatcaaggacgacaagggc 414
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>ref|NM_183057.1| Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae)
           (VPS28), transcript variant 2, mRNA
          Length = 1160

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 425 aggaccggcccatcaccatcaaggacgacaagggc 459
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>ref|NM_016208.2| Homo sapiens vacuolar protein sorting 28 homolog (S. cerevisiae)
           (VPS28), transcript variant 1, mRNA
          Length = 1065

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 425 aggaccggcccatcaccatcaaggacgacaagggc 459
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>ref|XM_962463.1| PREDICTED: Tribolium castaneum similar to DnaJ (Hsp40) homolog,
           subfamily B, member 1, transcript variant 1 (LOC661242),
           mRNA
          Length = 1047

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 54  ggtgcaggacccgcccatc 72
           |||||||||||||||||||
Sbjct: 498 ggtgcaggacccgcccatc 516
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>ref|XM_971038.1| PREDICTED: Tribolium castaneum similar to DnaJ (Hsp40) homolog,
           subfamily B, member 1, transcript variant 2 (LOC661242),
           mRNA
          Length = 981

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 54  ggtgcaggacccgcccatc 72
           |||||||||||||||||||
Sbjct: 432 ggtgcaggacccgcccatc 450
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 90     gggcgcgctcctctccggccgca 112
              |||||||||||||| ||||||||
Sbjct: 579139 gggcgcgctcctcttcggccgca 579161
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>emb|AL645615.14| Mouse DNA sequence from clone RP23-395B22 on chromosome 11 Contains the
             Ddx52 gene for DEAD (Asp-Glu-Ala-Asp) box polypeptide 52,
             the Ap1gbp1 gene for AP1 gamma subunit binding protein 1,
             the Dusp14 gene for dual specificity phosphatase 14 and
             the Tada2l gene for transcriptional adaptor 2 (ADA2
             homolog, yeast)-like, complete sequence
          Length = 196812

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     gcaatgctggtgcacacct 25
             |||||||||||||||||||
Sbjct: 80503 gcaatgctggtgcacacct 80521
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>emb|CR615683.1| full-length cDNA clone CS0DI040YD08 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 896

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 373 aggaccggcccatcaccatcaaggacgacaagggc 407
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>emb|CR610765.1| full-length cDNA clone CS0DI054YG02 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1460

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 59   aggacccgcccatcaccatgaagtaccacaagggc 93
            |||||| |||||||||||| ||| || ||||||||
Sbjct: 1030 aggaccggcccatcaccatcaaggacgacaagggc 1064
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>dbj|AK091979.1| Homo sapiens cDNA FLJ34660 fis, clone KIDNE2018891, highly similar to
            Homo sapiens VPS28 protein mRNA
          Length = 2357

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 59   aggacccgcccatcaccatgaagtaccacaagggc 93
            |||||| |||||||||||| ||| || ||||||||
Sbjct: 1393 aggaccggcccatcaccatcaaggacgacaagggc 1427
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>dbj|AK091526.1| Homo sapiens cDNA FLJ34207 fis, clone FCBBF3020163, moderately
            similar to Chlamydomonas reinhardtii dhc1 gene for
            1-alpha dynein heavy chain
          Length = 2797

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   ctcacggcgctggtgcagg 61
            |||||||||||||||||||
Sbjct: 2148 ctcacggcgctggtgcagg 2166
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>emb|CR603930.1| full-length cDNA clone CS0DL001YL06 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 923

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 404 aggaccggcccatcaccatcaaggacgacaagggc 438
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>dbj|AK090942.1| Homo sapiens cDNA FLJ33623 fis, clone BRAMY2021710, moderately
            similar to Homo sapiens VPS28 protein mRNA
          Length = 2141

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 59   aggacccgcccatcaccatgaagtaccacaagggc 93
            |||||| |||||||||||| ||| || ||||||||
Sbjct: 1176 aggaccggcccatcaccatcaaggacgacaagggc 1210
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>emb|CR602682.1| full-length cDNA clone CS0DC017YB14 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 786

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 271 aggaccggcccatcaccatcaaggacgacaagggc 305
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>emb|CR600507.1| full-length cDNA clone CS0DE012YD05 of Placenta of Homo sapiens
            (human)
          Length = 1569

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 59   aggacccgcccatcaccatgaagtaccacaagggc 93
            |||||| |||||||||||| ||| || ||||||||
Sbjct: 1105 aggaccggcccatcaccatcaaggacgacaagggc 1139
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>emb|CR593237.1| full-length cDNA clone CS0DB003YD09 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 901

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 388 aggaccggcccatcaccatcaaggacgacaagggc 422
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>emb|CR592521.1| full-length cDNA clone CS0DF006YB03 of Fetal brain of Homo sapiens
            (human)
          Length = 1650

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 59   aggacccgcccatcaccatgaagtaccacaagggc 93
            |||||| |||||||||||| ||| || ||||||||
Sbjct: 1145 aggaccggcccatcaccatcaaggacgacaagggc 1179
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>emb|CR591710.1| full-length cDNA clone CS0DI029YA05 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1532

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 59   aggacccgcccatcaccatgaagtaccacaagggc 93
            |||||| |||||||||||| ||| || ||||||||
Sbjct: 1145 aggaccggcccatcaccatcaaggacgacaagggc 1179
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>dbj|AB168525.1| Macaca fascicularis testis cDNA clone: QtsA-12781, similar to human
            dynein, axonemal, heavy polypeptide 10 (DNAH10), mRNA,
            RefSeq: XM_113706.6
          Length = 2215

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   ctcacggcgctggtgcagg 61
            |||||||||||||||||||
Sbjct: 1542 ctcacggcgctggtgcagg 1560
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>gb|AF316887.1|AF316887 Homo sapiens vacuolar sorting protein 28 (VPS28) mRNA, complete cds
          Length = 925

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 378 aggaccggcccatcaccatcaaggacgacaagggc 412
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>dbj|AB095937.2| Homo sapiens mRNA for KIAA2017 protein, partial cds
          Length = 9388

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   ctcacggcgctggtgcagg 61
            |||||||||||||||||||
Sbjct: 8743 ctcacggcgctggtgcagg 8761
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>gb|AC079315.30| Homo sapiens 12 BAC RP11-380L11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 121450

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 43     ctcacggcgctggtgcagg 61
              |||||||||||||||||||
Sbjct: 108887 ctcacggcgctggtgcagg 108905
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>gb|AF205589.5| Homo sapiens chromosome 8 clone CTA-393G12 map qtel, complete
            sequence
          Length = 143847

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 59   aggacccgcccatcaccatgaagtaccacaagggc 93
            |||||| |||||||||||| ||| || ||||||||
Sbjct: 9734 aggaccggcccatcaccatcaaggacgacaagggc 9768
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>gb|DQ000513.1| Synthetic construct clone PSF:103963 VPS28 gene, complete cds
          Length = 738

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 407 aggaccggcccatcaccatcaaggacgacaagggc 441
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 89      agggcgcgctcctctccggccgc 111
               |||||||||||| ||||||||||
Sbjct: 7239300 agggcgcgctccgctccggccgc 7239278
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>gb|AE005090.1| Halobacterium sp. NRC-1 section 121 of 170 of the complete genome
          Length = 13542

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    cacgaggcggctcacggcg 51
             |||||||||||||||||||
Sbjct: 11955 cacgaggcggctcacggcg 11937
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>dbj|AK026865.1| Homo sapiens cDNA: FLJ23212 fis, clone ADSU01518, highly similar to
           AF182844 Homo sapiens VPS28 protein mRNA
          Length = 1034

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 394 aggaccggcccatcaccatcaaggacgacaagggc 428
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>gb|AF182844.1|AF182844 Homo sapiens VPS28 protein mRNA, complete cds
          Length = 928

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  aggacccgcccatcaccatgaagtaccacaagggc 93
           |||||| |||||||||||| ||| || ||||||||
Sbjct: 396 aggaccggcccatcaccatcaaggacgacaagggc 430
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>dbj|D38508.1|ARGIFO1217 Arthrobacter globiformis gene for copper amine oxidase (monoamine
           oxidase, histamine oxidase), complete cds
          Length = 2520

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  cgctggtgcaggacccgcc 68
           |||||||||||||||||||
Sbjct: 119 cgctggtgcaggacccgcc 137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 622,140
Number of Sequences: 3902068
Number of extensions: 622140
Number of successful extensions: 70243
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69780
Number of HSP's gapped (non-prelim): 463
length of query: 112
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 91
effective length of database: 17,151,101,840
effective search space: 1560750267440
effective search space used: 1560750267440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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