ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart23g05 |
|---|---|
| Clone Library Name | barley_pub |
>GCX1_HUMAN (Q96NM4) Granulosa cell HMG box protein 1 (GCX-1)| Length = 488 Score = 31.2 bits (69), Expect = 0.70 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = +1 Query: 28 SSPAPAARSLGSASI--SLSLHGRPASSIACLPDLRSKQEDRTDMQGALVDSPGAAEAAV 201 +SPA AR+LGS S+ LS P S P L + QGAL+ P + A Sbjct: 350 ASPASLARTLGSKSLLPGLSASPPPPPSFPLSPTLHQQLSLPPHAQGALLSPPVSMSPAP 409 Query: 202 RP 207 +P Sbjct: 410 QP 411
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 30.8 bits (68), Expect = 0.92 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Frame = +1 Query: 22 TQSSPAPAARSL--GSASISLSLHGRPASSIACLPDLRSKQED-RTDMQGALVDSPGAAE 192 +Q+S AP+ S G ++LSL RP+S LPDL +D +GAL SPG + Sbjct: 610 SQASSAPSMTSSKGGQEDMNLSLQSRPSS----LPDLSGSIDDLPMGTEGAL--SPGVST 663 Query: 193 AAVRPSRYESQKRRDWHTFGQYLRNHRP 276 + + S+ E Q F + H P Sbjct: 664 SGISSSQGE-QSNPAQSPFSPHTSPHLP 690
>ITF2_RAT (Q62655) Transcription factor 4 (Immunoglobulin transcription| factor 2) (ITF-2) (RITF-2) (SL3-3 enhancer factor 2) (SEF-2) (R8f DNA-binding protein) Length = 589 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -2 Query: 185 APGLSTSAPCMSVLSSCFDLRSGKHAIDDAGLPW 84 +PG S+S P S SS F ++ G H+ D PW Sbjct: 117 SPGYSSSKPAASTFSSSFFMQDGHHSSD----PW 146
>DNAA_DESVH (Q729U6) Chromosomal replication initiator protein dnaA| Length = 491 Score = 29.3 bits (64), Expect = 2.7 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Frame = -1 Query: 297 APRE-LQRRAVVAQVLPERVPVPALLRLVPARPH----RRLSRPRAVHQRSL 157 APR L R V +V+P PVP+++ V ARP RRLS Q L Sbjct: 83 APRPVLAPRPAVVEVVPTAAPVPSVVPAVEARPSGHAPRRLSAETQQAQEQL 134
>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22| Length = 881 Score = 28.9 bits (63), Expect = 3.5 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Frame = +1 Query: 31 SPAPAARSLG-SASISLSLHGRPASSIACLPDLRSKQEDRTDMQGALVDSPGAAEAAVRP 207 SP P +R S S S S GR SS++ P R ++G DS + + P Sbjct: 707 SPVPKSRRRSVSYSRSRSPAGRRRSSVSRTPPRR--------VRGKSYDSRSPSRSVTPP 758 Query: 208 SRYESQKRRDWHTFGQYLRNHRPPL 282 R S RRD R+ PPL Sbjct: 759 RRRTSYSRRDRSYSRSLSRSVTPPL 783
>LRP1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 28.5 bits (62), Expect = 4.5 Identities = 20/68 (29%), Positives = 26/68 (38%) Frame = -2 Query: 287 SSSGGRWLRRYCPNVCQSRRFCDSYLLGRTAASAAPGLSTSAPCMSVLSSCFDLRSGKHA 108 S SG R +C N CQ+ C +LGR S A G T C + F G Sbjct: 4242 SYSGERCEVNHCSNYCQNGGTCVPSVLGRPTCSCALGF-TGPNCGKTVCEDFCQNGGTCI 4300 Query: 107 IDDAGLPW 84 + P+ Sbjct: 4301 VTAGNQPY 4308
>AMP_IMPBA (O24006) Antimicrobial peptides precursor (IB-AMP) [Contains: Basic| peptide AMP3 (IB-AMP3); Basic peptide AMP1-1 (IB-AMP1-1); Basic peptide AMP1-2 (IB-AMP1-2); Basic peptide AMP1-3 (IB-AMP1-3); Basic peptide AMP2 (IB-AMP2); Basic peptide AMP4 ( Length = 333 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = -2 Query: 263 RRYCPNVCQSRRFCDSYLLGRTAASAAPGLSTSAPCMSVLSS 138 RRYC CQS ++ G AS + + PCM + S Sbjct: 291 RRYCRRWCQSAEEAAAFQAGEVTASLMLIMFKACPCMGPVPS 332
>PERT_HUMAN (P07202) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 933 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/33 (48%), Positives = 17/33 (51%) Frame = +1 Query: 70 ISLSLHGRPASSIACLPDLRSKQEDRTDMQGAL 168 I L RPA+ ACLP RS T QGAL Sbjct: 272 IQLPEEARPAAGTACLPFYRSSAACGTGDQGAL 304
>MELPH_HUMAN (Q9BV36) Melanophilin (Exophilin-3) (Synaptotagmin-like protein 2a)| (Slp homolog lacking C2 domains a) Length = 600 Score = 28.5 bits (62), Expect = 4.5 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +1 Query: 49 RSLGSASISLSLHGR--PASSIACLPDLRSKQEDRTDMQGALVDSPGAAEAAVRPSRYES 222 + GSA + SLHGR + + + RS D+TD G PG +EA + + S Sbjct: 130 KRFGSAKVIRSLHGRLQGGAGPELISEERSGDSDQTDEDG----EPG-SEAQAQAQPFGS 184 Query: 223 QKRR 234 +K+R Sbjct: 185 KKKR 188
>Y011_CLOPE (Q8XPF2) UPF0182 protein CPE0011| Length = 918 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +1 Query: 127 RSKQEDRTDMQGALVDSPGAAEAA-VRPSRYESQKRRDWHTFGQYL 261 ++ +D T D G EAA + E+QK DW T+G+++ Sbjct: 860 KNSNKDETPKTEITSDKSGVKEAADLFNKAIEAQKNGDWATYGEFI 905
>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = -2 Query: 287 SSSGGRWLRRYCPNVCQSRRFCDSYLLGRTAASAAPGLS 171 S SGGR +C N CQ+ C LGR A G + Sbjct: 4242 SYSGGRCEVNHCSNYCQNGGTCIPSTLGRPTCICALGFT 4280
>GCSP_DEIRA (Q9RTF5) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 949 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%) Frame = -3 Query: 94 ACRGGRERSMPSR--GIEQRVRGKT 26 AC+ G ERSMP R G+ + VRG T Sbjct: 286 ACQKGFERSMPGRVIGVSKDVRGNT 310
>FTHS_CLOAC (P13419) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 556 Score = 28.1 bits (61), Expect = 5.9 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = -2 Query: 251 PNVCQSRRFCDSYLLGRTAASAAPGLSTSAPCMSVLSSCFDLRSGKHAIDDAG 93 PN+ Q+ +++ G A+ A G C SVL++ L++G +A+ +AG Sbjct: 254 PNIVQTLENTPAFIHGGPFANIAHG------CNSVLATKLALKTGDYAVTEAG 300
>HSP1_SAGIM (P24714) Sperm protamine P1 (Cysteine-rich protamine)| Length = 49 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +2 Query: 62 RHRSLSPSTAGRRRRSRACQI*GQSRRTGRTCRERW 169 R R GRRRR R C + RR R CR R+ Sbjct: 11 RSRCYRQRRRGRRRRRRTC----RRRRASRCCRRRY 42
>ABF2_STRCX (P82594) Alpha-N-arabinofuranosidase 2 precursor (EC 3.2.1.55)| (Alpha-N-arabinofuranosidase II) (Arabinosidase II) (Alpha-N-AFase II) Length = 328 Score = 28.1 bits (61), Expect = 5.9 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 7/40 (17%) Frame = +1 Query: 160 GALVDSPGAAEAAVRPSRYES---QKRRD----WHTFGQY 258 GAL PG A AA RP+ YE+ ++R D HT G+Y Sbjct: 32 GALTAVPGVAHAAPRPAPYENPLVRQRADPHIHRHTDGRY 71 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.129 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,129,611 Number of Sequences: 219361 Number of extensions: 732964 Number of successful extensions: 3224 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3096 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3224 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
