ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart23f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome... 184 1e-43
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 184 1e-43
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 184 1e-43
4ref|XM_466267.1| Oryza sativa (japonica cultivar-group), mRNA 60 4e-06
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
6dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
7gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 44 0.22
8ref|XM_852171.1| PREDICTED: Canis familiaris similar to Dolichyl... 44 0.22
9ref|XM_843737.1| PREDICTED: Canis familiaris similar to Dolichyl... 44 0.22
10dbj|AB121230.1| Cryptococcus humicola ChDDO gene for D-aspartate... 44 0.22
11dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.22
12gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.22
13ref|XM_366139.1| Magnaporthe grisea 70-15 chromosome IV hypothet... 42 0.88
14gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 0.88
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.88
16gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete ge... 42 0.88
17gb|DQ087285.1| Burkholderia pseudomallei phage phi52237, complet... 42 0.88
18emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 0.88
19emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 0.88
20emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 42 0.88
21gb|AY528597.1| Burkholderia pseudomallei clone 167 unknown sequence 42 0.88
22gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare str... 42 0.88
23gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 0.88
24gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 0.88
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.88
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.88
27dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic D... 42 0.88
28dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.88
29dbj|AK121731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.88
30dbj|AK119594.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.88
31dbj|AK111333.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.88
32dbj|AK064068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.88
33gb|AF054585.1|AF054585 Streptomyces coelicolor indoleglycerol ph... 42 0.88
34dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 0.88
35ref|XM_480271.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.5
36ref|XM_467432.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.5
37ref|NM_195889.1| Oryza sativa (japonica cultivar-group) hypothet... 40 3.5
38ref|XM_473255.1| Oryza sativa (japonica cultivar-group), predic... 40 3.5
39gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, co... 40 3.5
40gb|AC090441.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.5
41ref|XM_612729.2| PREDICTED: Bos taurus similar to VPS10 domain r... 40 3.5
42ref|XM_849537.1| PREDICTED: Canis familiaris similar to Tetraspa... 40 3.5
43gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 3.5
44emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete ... 40 3.5
45dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 3.5
46gb|AE005745.1| Caulobacter crescentus CB15 section 71 of 359 of ... 40 3.5
47gb|AE012487.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 3.5
48gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 3.5
49dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
50dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
51dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
52gb|AF325723.1|AF325723 Pennisetum ciliare phosphate-induced prot... 40 3.5
53gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.5
54dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
55dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
56dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 3.5
57gb|AE005156.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 1... 40 3.5
58dbj|AB154372.1| Ipomoea tricolor ItIVS gene for bHLH transcripti... 40 3.5
59dbj|AB154371.1| Ipomoea tricolor ItIVS gene for bHLH transcripti... 40 3.5
60dbj|AB154370.1| Ipomoea tricolor ItIVS mRNA for bHLH transcripti... 40 3.5
61dbj|AB154369.1| Ipomoea purpurea IpIVS mRNA for bHLH transcripti... 40 3.5
62dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
63dbj|AK070234.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.5
64dbj|AK064945.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.5
65gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 3.5
66gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 3.5
67gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.5
68emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4,... 40 3.5
69dbj|AB232775.1| Ipomoea nil InbHLH2 mRNA for bHLH transcriptiona... 40 3.5 
>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0004P24, complete sequence
          Length = 137721

 Score =  184 bits (93), Expect = 1e-43
 Identities = 153/173 (88%)
 Strand = Plus / Plus

                                                                         
Query: 55    cacgtcgacctcatcccggggatgcccgacgacgtcgccgtcgactgcctggcgcgcgtc 114
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18281 cacgtcgagctcatcccggggatgcccgacgacgtcgccgtcgactgcctggcgcgcgtc 18340

                                                                         
Query: 115   ccgcacggatcctaccgctcgatgcgccgcgtgtgccgcggctggcggagcgccgccgcc 174
             ||||||||  |  ||||  ||||||| |||||||||||||| ||| ||||||| || || 
Sbjct: 18341 ccgcacggggctcaccgggcgatgcggcgcgtgtgccgcgggtggaggagcgcggcggcg 18400

                                                                  
Query: 175   gccccggagttcgccctggcgcgcgccgaggccggcgccaacgaggatctggt 227
              | || | ||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct: 18401 acgcccgcgttcgccatggcgcgcgccgaggcgggcgccaacgaggatttggt 18453
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  184 bits (93), Expect = 1e-43
 Identities = 153/173 (88%)
 Strand = Plus / Minus

                                                                           
Query: 55      cacgtcgacctcatcccggggatgcccgacgacgtcgccgtcgactgcctggcgcgcgtc 114
               |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7798674 cacgtcgagctcatcccggggatgcccgacgacgtcgccgtcgactgcctggcgcgcgtc 7798615

                                                                           
Query: 115     ccgcacggatcctaccgctcgatgcgccgcgtgtgccgcggctggcggagcgccgccgcc 174
               ||||||||  |  ||||  ||||||| |||||||||||||| ||| ||||||| || || 
Sbjct: 7798614 ccgcacggggctcaccgggcgatgcggcgcgtgtgccgcgggtggaggagcgcggcggcg 7798555

                                                                    
Query: 175     gccccggagttcgccctggcgcgcgccgaggccggcgccaacgaggatctggt 227
                | || | ||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct: 7798554 acgcccgcgttcgccatggcgcgcgccgaggcgggcgccaacgaggatttggt 7798502
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  184 bits (93), Expect = 1e-43
 Identities = 153/173 (88%)
 Strand = Plus / Minus

                                                                           
Query: 55      cacgtcgacctcatcccggggatgcccgacgacgtcgccgtcgactgcctggcgcgcgtc 114
               |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7868761 cacgtcgagctcatcccggggatgcccgacgacgtcgccgtcgactgcctggcgcgcgtc 7868702

                                                                           
Query: 115     ccgcacggatcctaccgctcgatgcgccgcgtgtgccgcggctggcggagcgccgccgcc 174
               ||||||||  |  ||||  ||||||| |||||||||||||| ||| ||||||| || || 
Sbjct: 7868701 ccgcacggggctcaccgggcgatgcggcgcgtgtgccgcgggtggaggagcgcggcggcg 7868642

                                                                    
Query: 175     gccccggagttcgccctggcgcgcgccgaggccggcgccaacgaggatctggt 227
                | || | ||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct: 7868641 acgcccgcgttcgccatggcgcgcgccgaggcgggcgccaacgaggatttggt 7868589
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>ref|XM_466267.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1200

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                       
Query: 64  ctcatcccggggatgcccgacgacgtcgccgtcgactgcctggcgcgcgtcccgcacgga 123
           |||||||||||| |||| |||||||| ||| | || |||||||||||||| |||  | | 
Sbjct: 70  ctcatcccggggttgccggacgacgtggccatggagtgcctggcgcgcgtgccgagccgg 129

                                                 
Query: 124 tcctaccgctcgatgcgccgcgtgtgccgcggctggcg 161
           ||  ||||  || ||||||||||||||||||| |||||
Sbjct: 130 tcgcaccgggcggtgcgccgcgtgtgccgcgggtggcg 167
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                            
Query: 64       ctcatcccggggatgcccgacgacgtcgccgtcgactgcctggcgcgcgtcccgcacgga 123
                |||||||||||| |||| |||||||| ||| | || |||||||||||||| |||  | | 
Sbjct: 21385077 ctcatcccggggttgccggacgacgtggccatggagtgcctggcgcgcgtgccgagccgg 21385136

                                                      
Query: 124      tcctaccgctcgatgcgccgcgtgtgccgcggctggcg 161
                ||  ||||  || ||||||||||||||||||| |||||
Sbjct: 21385137 tcgcaccgggcggtgcgccgcgtgtgccgcgggtggcg 21385174



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 191      tggcgcgcgccgaggccggc 210
                ||||||||||||||||||||
Sbjct: 29483459 tggcgcgcgccgaggccggc 29483440
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>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1712_E04
          Length = 110098

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                         
Query: 64    ctcatcccggggatgcccgacgacgtcgccgtcgactgcctggcgcgcgtcccgcacgga 123
             |||||||||||| |||| |||||||| ||| | || |||||||||||||| |||  | | 
Sbjct: 45030 ctcatcccggggttgccggacgacgtggccatggagtgcctggcgcgcgtgccgagccgg 45089

                                                   
Query: 124   tcctaccgctcgatgcgccgcgtgtgccgcggctggcg 161
             ||  ||||  || ||||||||||||||||||| |||||
Sbjct: 45090 tcgcaccgggcggtgcgccgcgtgtgccgcgggtggcg 45127
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 198     cgccgaggccggcgccaacgaggatc 223
               |||||||| |||||||||||||||||
Sbjct: 4281763 cgccgaggacggcgccaacgaggatc 4281788
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>ref|XM_852171.1| PREDICTED: Canis familiaris similar to
           Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 67 kDa subunit precursor (Ribophorin
           I) (RPN-I), transcript variant 4 (LOC476516), mRNA
          Length = 1957

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 159 gcggagcgccgccgccgccccg 180
           ||||||||||||||||||||||
Sbjct: 52  gcggagcgccgccgccgccccg 31
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>ref|XM_843737.1| PREDICTED: Canis familiaris similar to
           Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 67 kDa subunit precursor (Ribophorin
           I) (RPN-I), transcript variant 3 (LOC476516), mRNA
          Length = 2110

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 159 gcggagcgccgccgccgccccg 180
           ||||||||||||||||||||||
Sbjct: 52  gcggagcgccgccgccgccccg 31
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>dbj|AB121230.1| Cryptococcus humicola ChDDO gene for D-aspartate oxidase, exon 1-3,
            complete cds
          Length = 1783

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 191  tggcgcgcgccgaggccggcgc 212
            ||||||||||||||||||||||
Sbjct: 1120 tggcgcgcgccgaggccggcgc 1099
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 241     ttcggcaacccggtggccggcg 262
               ||||||||||||||||||||||
Sbjct: 1606464 ttcggcaacccggtggccggcg 1606443



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     ccgccgccgccccggagttc 186
               ||||||||||||||||||||
Sbjct: 4061183 ccgccgccgccccggagttc 4061164
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 196     cgcgccgaggccggcgccaacgagga 221
               |||||||||||||||||| |||||||
Sbjct: 2631514 cgcgccgaggccggcgccgacgagga 2631489
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>ref|XM_366139.1| Magnaporthe grisea 70-15 chromosome IV hypothetical protein
            (MG10359.4) partial mRNA
          Length = 1248

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 190  ctggcgcgcgccgaggccggc 210
            |||||||||||||||||||||
Sbjct: 1036 ctggcgcgcgccgaggccggc 1056
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 192     ggcgcgcgccgaggccggcgc 212
               |||||||||||||||||||||
Sbjct: 3181412 ggcgcgcgccgaggccggcgc 3181432
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 128      accgctcgatgcgccgcgtgt 148
                |||||||||||||||||||||
Sbjct: 10557369 accgctcgatgcgccgcgtgt 10557349
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>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome
          Length = 138390

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 189   cctggcgcgcgccgaggccgg 209
             |||||||||||||||||||||
Sbjct: 82002 cctggcgcgcgccgaggccgg 81982
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>gb|DQ087285.1| Burkholderia pseudomallei phage phi52237, complete genome
          Length = 37639

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 189  cctggcgcgcgccgaggccggcgcc 213
            ||||||||||||||||| |||||||
Sbjct: 6106 cctggcgcgcgccgaggtcggcgcc 6130
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 192     ggcgcgcgccgaggccggcgc 212
               |||||||||||||||||||||
Sbjct: 1358844 ggcgcgcgccgaggccggcgc 1358864
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 189    cctggcgcgcgccgaggccggcgcc 213
              ||||||||||||||||| |||||||
Sbjct: 148671 cctggcgcgcgccgaggtcggcgcc 148695
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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 195   gcgcgccgaggccggcgccaa 215
             |||||||||||||||||||||
Sbjct: 89136 gcgcgccgaggccggcgccaa 89116
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>gb|AY528597.1| Burkholderia pseudomallei clone 167 unknown sequence
          Length = 246

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 189 cctggcgcgcgccgaggccggcgcc 213
           ||||||||||||||||| |||||||
Sbjct: 109 cctggcgcgcgccgaggtcggcgcc 85
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>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0036G02, from chromosome 3, complete sequence
          Length = 153308

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    accgctcgatgcgccgcgtgt 148
              |||||||||||||||||||||
Sbjct: 113182 accgctcgatgcgccgcgtgt 113162
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 194     cgcgcgccgaggccggcgcca 214
               |||||||||||||||||||||
Sbjct: 1413119 cgcgcgccgaggccggcgcca 1413099
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 192     ggcgcgcgccgaggccggcgc 212
               |||||||||||||||||||||
Sbjct: 1274325 ggcgcgcgccgaggccggcgc 1274305
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 165      cgccgccgccgccccggagttcgcc 189
                |||||||||||| ||||||||||||
Sbjct: 27926370 cgccgccgccgcgccggagttcgcc 27926394
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 128      accgctcgatgcgccgcgtgt 148
                |||||||||||||||||||||
Sbjct: 10555470 accgctcgatgcgccgcgtgt 10555450
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>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E03
          Length = 159980

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 165   cgccgccgccgccccggagttcgcc 189
             |||||||||||| ||||||||||||
Sbjct: 89728 cgccgccgccgcgccggagttcgcc 89752
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>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1343_D04
          Length = 143407

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 165   cgccgccgccgccccggagttcgcc 189
             |||||||||||| ||||||||||||
Sbjct: 15704 cgccgccgccgcgccggagttcgcc 15728
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>dbj|AK121731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082H10, full
            insert sequence
          Length = 1850

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 128  accgctcgatgcgccgcgtgt 148
            |||||||||||||||||||||
Sbjct: 1226 accgctcgatgcgccgcgtgt 1206
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>dbj|AK119594.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D07, full
            insert sequence
          Length = 2009

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 128  accgctcgatgcgccgcgtgt 148
            |||||||||||||||||||||
Sbjct: 1397 accgctcgatgcgccgcgtgt 1377
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>dbj|AK111333.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-E06, full
           insert sequence
          Length = 811

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 165 cgccgccgccgccccggagttcgcc 189
           |||||||||||| ||||||||||||
Sbjct: 55  cgccgccgccgcgccggagttcgcc 79
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>dbj|AK064068.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-G08, full
           insert sequence
          Length = 875

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 128 accgctcgatgcgccgcgtgt 148
           |||||||||||||||||||||
Sbjct: 248 accgctcgatgcgccgcgtgt 228
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>gb|AF054585.1|AF054585 Streptomyces coelicolor indoleglycerol phosphate synthase (trpC),
           tryptophan synthase beta subunit (trpB), and tryptophan
           synthase alpha subunit (trpA) genes, complete cds; and
           unknown gene
          Length = 5093

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 195 gcgcgccgaggccggcgccaa 215
           |||||||||||||||||||||
Sbjct: 442 gcgcgccgaggccggcgccaa 462
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 178   ccggagttcgccctggcgcgc 198
             |||||||||||||||||||||
Sbjct: 93998 ccggagttcgccctggcgcgc 93978
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>ref|XM_480271.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 684

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 ggcggagcgccgccgccgcc 177
           ||||||||||||||||||||
Sbjct: 356 ggcggagcgccgccgccgcc 337
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>ref|XM_467432.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1815

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 tggcgcgcgccgaggccggc 210
           ||||||||||||||||||||
Sbjct: 696 tggcgcgcgccgaggccggc 715
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>ref|NM_195889.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0052C09.12), mRNA
          Length = 942

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 cgccgaggccggcgccaacg 217
           ||||||||||||||||||||
Sbjct: 510 cgccgaggccggcgccaacg 529
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>ref|XM_473255.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2079

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 162 gagcgccgccgccgccccgg 181
           ||||||||||||||||||||
Sbjct: 120 gagcgccgccgccgccccgg 101
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>gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, complete sequence
          Length = 268984

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 154    ggctggcggagcgccgccgccgcc 177
              ||||||||||||| ||||||||||
Sbjct: 105617 ggctggcggagcgacgccgccgcc 105640
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>gb|AC090441.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0052C09, complete sequence
          Length = 139468

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   cgccgaggccggcgccaacg 217
             ||||||||||||||||||||
Sbjct: 97540 cgccgaggccggcgccaacg 97559
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>ref|XM_612729.2| PREDICTED: Bos taurus similar to VPS10 domain receptor protein
           SORCS 3 (LOC533349), mRNA
          Length = 1661

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 caacgaggatctggtcttcc 232
           ||||||||||||||||||||
Sbjct: 679 caacgaggatctggtcttcc 660
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>ref|XM_849537.1| PREDICTED: Canis familiaris similar to Tetraspanin-9 (Tspan-9)
           (Tetraspan NET-5) (LOC612996), mRNA
          Length = 993

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 cgcgccgaggccggcgccaa 215
           ||||||||||||||||||||
Sbjct: 160 cgcgccgaggccggcgccaa 179
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     cgcgccgaggccggcgccaa 215
               ||||||||||||||||||||
Sbjct: 1848628 cgcgccgaggccggcgccaa 1848647
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>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29
          Length = 299050

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    ggcgcgcgccgaggccggcg 211
              ||||||||||||||||||||
Sbjct: 248502 ggcgcgcgccgaggccggcg 248483
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 248     acccggtggccggcgacgac 267
               ||||||||||||||||||||
Sbjct: 3307324 acccggtggccggcgacgac 3307305
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>gb|AE005745.1| Caulobacter crescentus CB15 section 71 of 359 of the complete genome
          Length = 12357

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  cgccgaggccggcgccaacg 217
            ||||||||||||||||||||
Sbjct: 3296 cgccgaggccggcgccaacg 3277
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>gb|AE012487.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 395
            of 460 of the complete genome
          Length = 10967

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  cgccgccccggagttcgccc 190
            ||||||||||||||||||||
Sbjct: 7719 cgccgccccggagttcgccc 7700
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     cgccgccccggagttcgccc 190
               ||||||||||||||||||||
Sbjct: 4425323 cgccgccccggagttcgccc 4425304
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 162      gagcgccgccgccgccccgg 181
                ||||||||||||||||||||
Sbjct: 26369656 gagcgccgccgccgccccgg 26369637
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 198     cgccgaggccggcgccaacg 217
               ||||||||||||||||||||
Sbjct: 9745015 cgccgaggccggcgccaacg 9745034
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 158     ggcggagcgccgccgccgcc 177
               ||||||||||||||||||||
Sbjct: 4005382 ggcggagcgccgccgccgcc 4005363
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>gb|AF325723.1|AF325723 Pennisetum ciliare phosphate-induced protein 1-like protein mRNA,
           complete cds
          Length = 1160

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 80  ccgacgacgtcgccgtcgac 99
           ||||||||||||||||||||
Sbjct: 545 ccgacgacgtcgccgtcgac 564
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 186     cgccctggcgcgcgccgagg 205
               ||||||||||||||||||||
Sbjct: 3071963 cgccctggcgcgcgccgagg 3071982



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 242    tcggcaacccggtggccggcgacg 265
              ||||| ||||||||||||||||||
Sbjct: 310706 tcggccacccggtggccggcgacg 310729
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>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1038_A06
          Length = 147836

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   tggcgcgcgccgaggccggc 210
             ||||||||||||||||||||
Sbjct: 78489 tggcgcgcgccgaggccggc 78470
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>dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1311_H06
          Length = 139868

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    tggcgcgcgccgaggccggc 210
              ||||||||||||||||||||
Sbjct: 134331 tggcgcgcgccgaggccggc 134312
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 74      ggatgcccgacgacgtcgcc 93
               ||||||||||||||||||||
Sbjct: 2867414 ggatgcccgacgacgtcgcc 2867395
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>gb|AE005156.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 17 of 32 of the
            complete genome
          Length = 10091

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 153  cggctggcggagcgccgccg 172
            ||||||||||||||||||||
Sbjct: 4952 cggctggcggagcgccgccg 4933
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>dbj|AB154372.1| Ipomoea tricolor ItIVS gene for bHLH transcription activator Ivory
             seed, ivory seed-variegation (ivs-v) mutant alele
          Length = 13370

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   ctggcggagcgccgccgccg 175
             ||||||||||||||||||||
Sbjct: 10337 ctggcggagcgccgccgccg 10356
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>dbj|AB154371.1| Ipomoea tricolor ItIVS gene for bHLH transcription activator Ivory
            seed, complete cds
          Length = 10104

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  ctggcggagcgccgccgccg 175
            ||||||||||||||||||||
Sbjct: 7072 ctggcggagcgccgccgccg 7091
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>dbj|AB154370.1| Ipomoea tricolor ItIVS mRNA for bHLH transcription activator Ivory
            seed, complete cds
          Length = 2387

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  ctggcggagcgccgccgccg 175
            ||||||||||||||||||||
Sbjct: 1609 ctggcggagcgccgccgccg 1628
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>dbj|AB154369.1| Ipomoea purpurea IpIVS mRNA for bHLH transcription activator Ivory
            seed, complete cds
          Length = 2314

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  ctggcggagcgccgccgccg 175
            ||||||||||||||||||||
Sbjct: 1567 ctggcggagcgccgccgccg 1586
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>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0462E11
          Length = 166115

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   ggcggagcgccgccgccgcc 177
             ||||||||||||||||||||
Sbjct: 92679 ggcggagcgccgccgccgcc 92660
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>dbj|AK070234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044K18, full
           insert sequence
          Length = 1816

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 tggcgcgcgccgaggccggc 210
           ||||||||||||||||||||
Sbjct: 697 tggcgcgcgccgaggccggc 716
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>dbj|AK064945.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P15, full
           insert sequence
          Length = 2455

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 162 gagcgccgccgccgccccgg 181
           ||||||||||||||||||||
Sbjct: 304 gagcgccgccgccgccccgg 285
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 248     acccggtggccggcgacgac 267
               ||||||||||||||||||||
Sbjct: 3303472 acccggtggccggcgacgac 3303453
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 189     cctggcgcgcgccgaggccg 208
               ||||||||||||||||||||
Sbjct: 1952428 cctggcgcgcgccgaggccg 1952409
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 198     cgccgaggccggcgccaacg 217
               ||||||||||||||||||||
Sbjct: 9751054 cgccgaggccggcgccaacg 9751073
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>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
             complete sequence
          Length = 171551

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   gagcgccgccgccgccccgg 181
             ||||||||||||||||||||
Sbjct: 10289 gagcgccgccgccgccccgg 10270
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>dbj|AB232775.1| Ipomoea nil InbHLH2 mRNA for bHLH transcriptional factor, complete
            cds, strain:TKS
          Length = 2309

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  ctggcggagcgccgccgccg 175
            ||||||||||||||||||||
Sbjct: 1590 ctggcggagcgccgccgccg 1609


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,524,418
Number of Sequences: 3902068
Number of extensions: 2524418
Number of successful extensions: 84440
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80243
Number of HSP's gapped (non-prelim): 4191
length of query: 268
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 246
effective length of database: 17,147,199,772
effective search space: 4218211143912
effective search space used: 4218211143912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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