ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart23f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (... 45 6e-05
2DR100_ARATH (Q00874) DNA-damage-repair/toleration protein DRT100... 42 3e-04
3PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor (Po... 40 0.001
4PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor (Polyg... 38 0.007
5PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11... 35 0.047
6NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.1... 32 0.31
7BRL1_ARATH (Q9ZWC8) Serine/threonine-protein kinase BRI1-like 1 ... 29 2.6

>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)|
           (Phytosulfokine LRR receptor kinase)
          Length = 1008

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 131 CHPDDLSALRGFAGNLSGGAVLLRAAWSGTVCCGWDGVGCDA-ASGRVTALRLPGRGLAG 307
           CHP DL ALR F  +L         + S T CC W G+ C++  +GRV  L L  + L+G
Sbjct: 31  CHPHDLEALRDFIAHLEPKPDGWINSSSSTDCCNWTGITCNSNNTGRVIRLELGNKKLSG 90

Query: 308 AI 313
            +
Sbjct: 91  KL 92



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>DR100_ARATH (Q00874) DNA-damage-repair/toleration protein DRT100 precursor|
          Length = 372

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 131 CHPDDLSALRGFAGNLSGGAVLLRAAWS-GTVCCG-WDGVGCDAASGRVTALRLPG 292
           C P D +AL  F  +LS   + +   WS  T CC  W G+ CD  SGRVT + L G
Sbjct: 27  CSPKDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRG 82



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>PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (Floral organ
           regulator 1)
          Length = 332

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 116 ARAASCHPDDLSALRGFAGNLSGGAVLLRAAWSGTVCCGWDGVGCDAASGRVTALRLPG- 292
           ARA  C P D  AL     +L   A L   + +   CC WD V CD A GRV  + + G 
Sbjct: 22  ARAVRCPPSDKQALMRVKQSLGNPATLSTWSLASADCCEWDHVRCDEA-GRVNNVFIDGA 80

Query: 293 RGLAGAIP 316
             + G IP
Sbjct: 81  NDVRGQIP 88



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>PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor|
           (Polygalacturonase-inhibiting protein)
          Length = 330

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 131 CHPDDLSALRGFAGNLSGGAVLLRAAW-SGTVCCGWDGVGCDAASGRVTALRLPGRGLAG 307
           C+PDD   L           VL  A+W S T CC W  V CD+ + R+ +L +    ++G
Sbjct: 27  CNPDDKKVLLQIKKAFGDPYVL--ASWKSDTDCCDWYCVTCDSTTNRINSLTIFAGQVSG 84

Query: 308 AIP 316
            IP
Sbjct: 85  QIP 87



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>PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11.1)|
           (Phytosulfokine LRR receptor kinase)
          Length = 1021

 Score = 35.0 bits (79), Expect = 0.047
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
 Frame = +2

Query: 128 SCHPDDLSALRGFAGNLSG---GAVLLRAAWSGTVCCGWDGVGCDAA----------SGR 268
           +C+ +DL AL GF   L     G     ++   + CC W G+ C ++          SGR
Sbjct: 28  TCNSNDLKALEGFMRGLESSIDGWKWNESSSFSSNCCDWVGISCKSSVSLGLDDVNESGR 87

Query: 269 VTALRLPGRGLAGAI 313
           V  L L  R L+G +
Sbjct: 88  VVELELGRRKLSGKL 102



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>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)|
          Length = 924

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 206 AWSGTVCC--GWDGVGCDAASGR--VTALRLPGRGLAGAIP 316
           +WSG  C    W GV CD ++G   +T L L    L G IP
Sbjct: 382 SWSGDPCMLFPWKGVACDGSNGSSVITKLDLSSSNLKGTIP 422



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>BRL1_ARATH (Q9ZWC8) Serine/threonine-protein kinase BRI1-like 1 precursor (EC|
           2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1)
          Length = 1166

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 212 SGTVCCGWDGVGCDAASGRVTALRLPGRGLAGAI 313
           SG   C W GV C +  GR+  L L   GL G +
Sbjct: 61  SGRGSCSWRGVSC-SDDGRIVGLDLRNSGLTGTL 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,737,427
Number of Sequences: 219361
Number of extensions: 307226
Number of successful extensions: 1170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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