ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart23f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OXO2_HORVU (P45851) Oxalate oxidase 2 precursor (EC 1.2.3.4) (Ge... 50 2e-06
2GER2_WHEAT (P15290) Oxalate oxidase GF-2.8 precursor (EC 1.2.3.4... 47 2e-05
3GER3_WHEAT (P26759) Oxalate oxidase GF-3.8 precursor (EC 1.2.3.4... 46 3e-05
4OXO1_HORVU (P45850) Oxalate oxidase 1 (EC 1.2.3.4) (Germin) 42 5e-04
5RL15_SILPO (Q5LW38) 50S ribosomal protein L15 29 3.1
6DHH1_CRYNV (Q58Z64) ATP-dependent RNA helicase VAD1 (EC 3.6.1.-)... 28 5.3
7DAZ1_CAEEL (Q20870) DAZ protein 1 28 5.3
8IGHA1_HUMAN (P01876) Ig alpha-1 chain C region 28 6.9
9CDKL5_HUMAN (O76039) Cyclin-dependent kinase-like 5 (EC 2.7.11.2... 28 6.9
10DHH1_CRYNE (Q5KJI2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-) 28 6.9
11IGHA1_GORGO (P20758) Ig alpha-1 chain C region 28 9.0
12RL15_CAUCR (Q9A8T4) 50S ribosomal protein L15 28 9.0

>OXO2_HORVU (P45851) Oxalate oxidase 2 precursor (EC 1.2.3.4) (Germin)|
          Length = 224

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 25/48 (52%), Positives = 25/48 (52%)
 Frame = +2

Query: 11  MGYSKTXXXXXXXXXXXXXXXXXXXXXXXQDFCVADLDGKAVSVNGHP 154
           MGYSKT                       QDFCVADLDGKAVSVNGHP
Sbjct: 1   MGYSKTLAVSLFAVLLLAPAVLASDPDPLQDFCVADLDGKAVSVNGHP 48



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>GER2_WHEAT (P15290) Oxalate oxidase GF-2.8 precursor (EC 1.2.3.4) (Germin|
           GF-2.8)
          Length = 224

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 24/47 (51%), Positives = 24/47 (51%)
 Frame = +2

Query: 11  MGYSKTXXXXXXXXXXXXXXXXXXXXXXXQDFCVADLDGKAVSVNGH 151
           MGYSKT                       QDFCVADLDGKAVSVNGH
Sbjct: 1   MGYSKTLVAGLFAMLLLAPAVLATDPDPLQDFCVADLDGKAVSVNGH 47



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>GER3_WHEAT (P26759) Oxalate oxidase GF-3.8 precursor (EC 1.2.3.4) (Germin|
           GF-3.8)
          Length = 224

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 23/47 (48%), Positives = 23/47 (48%)
 Frame = +2

Query: 11  MGYSKTXXXXXXXXXXXXXXXXXXXXXXXQDFCVADLDGKAVSVNGH 151
           MGYSK                        QDFCVADLDGKAVSVNGH
Sbjct: 1   MGYSKNIASGMFAMLLLASAVLSSNPHPLQDFCVADLDGKAVSVNGH 47



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>OXO1_HORVU (P45850) Oxalate oxidase 1 (EC 1.2.3.4) (Germin)|
          Length = 201

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +2

Query: 98  QDFCVADLDGKAVSVNGH 151
           QDFCVADLDGKAVSVNGH
Sbjct: 7   QDFCVADLDGKAVSVNGH 24



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>RL15_SILPO (Q5LW38) 50S ribosomal protein L15|
          Length = 157

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 107 RSPGEGQGRMPGRPVQGAARRTG 39
           R PG G+G+M GR ++G   R+G
Sbjct: 21  RGPGSGKGKMGGRGIKGQKSRSG 43



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>DHH1_CRYNV (Q58Z64) ATP-dependent RNA helicase VAD1 (EC 3.6.1.-) (Virulence|
           associated DEAD box protein 1)
          Length = 616

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 122 QGRRHRSPGEGQGRMPGRPVQGAAR 48
           +G+ HR  G G+G  PG P  GA++
Sbjct: 586 RGQGHRGRGRGRGGQPGHPGAGASQ 610



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>DAZ1_CAEEL (Q20870) DAZ protein 1|
          Length = 499

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 125 RQGRRHRSPGEGQGRMPGRPVQGAARRTG*PLGFWSTP 12
           RQG++ R P E Q +    P++GA  RT  P    STP
Sbjct: 431 RQGKKSRKPSECQDKKTKSPIKGA--RTERPSSSASTP 466



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>IGHA1_HUMAN (P01876) Ig alpha-1 chain C region|
          Length = 353

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 21  PKP*RLACSPCCSLHRPSWHPTLTLSRTSVSPTLTAKR 134
           P P    C P  SLHRP+    L  S  +++ TLT  R
Sbjct: 116 PTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLR 153



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>CDKL5_HUMAN (O76039) Cyclin-dependent kinase-like 5 (EC 2.7.11.22)|
            (Serine/threonine-protein kinase 9)
          Length = 1030

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 15   GTPKP*RLACSPCCSLHR----PSWHPTLTLSRTSVSPTLTAK 131
            G PK     C P  +LHR    P+ +P L +  TS+ PTL  +
Sbjct: 939  GDPKKPHTPCVPNRALHRPISSPAPYPVLQVRGTSMCPTLQVR 981



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>DHH1_CRYNE (Q5KJI2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)|
          Length = 625

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 122 QGRRHRSPGEGQGRMPGRPVQGA 54
           +G+ HR  G G+G  PG+P  GA
Sbjct: 593 RGQGHRGRGRGRGGQPGQPGAGA 615



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>IGHA1_GORGO (P20758) Ig alpha-1 chain C region|
          Length = 353

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 21  PKP*RLACSPCCSLHRPSWHPTLTLSRTSVSPTLTAKR 134
           P P    C P  SLHRP+    L  S  +++ TLT  R
Sbjct: 116 PTPSPPCCHPRLSLHRPALEDLLLGSEANLTCTLTGLR 153



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>RL15_CAUCR (Q9A8T4) 50S ribosomal protein L15|
          Length = 161

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 107 RSPGEGQGRMPGRPVQGAARRTG 39
           R PG G+G+  GR V+G   R+G
Sbjct: 22  RGPGSGKGKTAGRGVKGQKARSG 44


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,432,736
Number of Sequences: 219361
Number of extensions: 306914
Number of successful extensions: 1273
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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