Clone Name | bart23f01 |
---|---|
Clone Library Name | barley_pub |
>gb|U01963.1|HVU01963 Hordeum vulgare CM 72 germin subunit mRNA, complete cds Length = 1006 Score = 299 bits (151), Expect = 1e-78 Identities = 154/155 (99%) Strand = Plus / Plus Query: 5 caagcaatggggtactccaaaaccctagcggttagcctgttcgccgtgctgctccttgca 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 caagcaatggggtactccaaaaccctagcggttagcctgttcgccgtgctgctccttgca 146 Query: 65 ccggccgtcctggcatccgaccctgaccctctccaggacttctgtgtcgccgaccttgac 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 ccggccgtcctggcatccgaccctgaccctctccaggacttctgtgtcgccgaccttgac 206 Query: 125 ggcaaagcggtctcagtgaatggtcatccgagcaa 159 |||||||||||||||||||||||||||||| |||| Sbjct: 207 ggcaaagcggtctcagtgaatggtcatccgtgcaa 241
>emb|AJ556991.1|TAE556991 Triticum aestivum mRNA for oxalate oxidase precursor (OXO1 gene) Length = 675 Score = 145 bits (73), Expect = 5e-32 Identities = 130/149 (87%) Strand = Plus / Plus Query: 11 atggggtactccaaaaccctagcggttagcctgttcgccgtgctgctccttgcaccggcc 70 |||||||||||||||||||||| | | ||||||| ||| ||||||||| || || | | Sbjct: 1 atggggtactccaaaaccctagtagctggcctgtttgccacgctgctcctagctccagtc 60 Query: 71 gtcctggcatccgaccctgaccctctccaggacttctgtgtcgccgaccttgacggcaaa 130 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 61 gtcctggctaccgaccctgaccctctccaggacttctgtgtcgccgacctcgacggcaag 120 Query: 131 gcggtctcagtgaatggtcatccgagcaa 159 |||||||| ||||| || |||||| |||| Sbjct: 121 gcggtctcggtgaacgggcatccgtgcaa 149
>emb|Y09917.1|TAPSBGER3 T.aestivum mRNA for germin-like protein 3 Length = 1027 Score = 137 bits (69), Expect = 1e-29 Identities = 129/149 (86%) Strand = Plus / Plus Query: 5 caagcaatggggtactccaaaaccctagcggttagcctgttcgccgtgctgctccttgca 64 ||||| ||||| |||||||||| ||||| || | ||||||| | | ||||||||||||| Sbjct: 54 caagccatgggttactccaaaaacctaggggctggcctgtttggcatgctgctccttgct 113 Query: 65 ccggccgtcctggcatccgaccctgaccctctccaggacttctgtgtcgccgaccttgac 124 |||| ||||||||| ||||||||||||||||||||||||||||| || || ||||| ||| Sbjct: 114 ccgggcgtcctggcctccgaccctgaccctctccaggacttctgcgttgctgacctcgac 173 Query: 125 ggcaaagcggtctcagtgaatggtcatcc 153 ||||| |||||||| ||||| || ||||| Sbjct: 174 ggcaaggcggtctctgtgaacgggcatcc 202
>emb|Y09915.1|TAPSBGER1 T.aestivum mRNA for germin-like protein 1 Length = 856 Score = 137 bits (69), Expect = 1e-29 Identities = 129/149 (86%) Strand = Plus / Plus Query: 5 caagcaatggggtactccaaaaccctagcggttagcctgttcgccgtgctgctccttgca 64 ||||||||||||||||| |||| |||||||| | ||||||||||| ||||| |||| || Sbjct: 81 caagcaatggggtactctaaaaacctagcggctggcctgttcgccatgctgttcctagct 140 Query: 65 ccggccgtcctggcatccgaccctgaccctctccaggacttctgtgtcgccgaccttgac 124 ||||||||||||||||||||||| || ||||| |||||||||||||| |||||||| || Sbjct: 141 ccggccgtcctggcatccgaccccgatcctcttcaggacttctgtgttgccgacctcgat 200 Query: 125 ggcaaagcggtctcagtgaatggtcatcc 153 |||| || ||||| ||||| || ||||| Sbjct: 201 ggcagggcagtctcggtgaacgggcatcc 229
>gb|M21962.1|WHTGAMINA Triticum aestivum germin protein precursor, mRNA, complete cds Length = 1012 Score = 131 bits (66), Expect = 7e-28 Identities = 117/134 (87%) Strand = Plus / Plus Query: 11 atggggtactccaaaaccctagcggttagcctgttcgccgtgctgctccttgcaccggcc 70 |||||||||||||||||||||| | | |||||||||| ||||| | || || |||||| Sbjct: 86 atggggtactccaaaaccctagtagctggcctgttcgcaatgctgttactagctccggcc 145 Query: 71 gtcctggcatccgaccctgaccctctccaggacttctgtgtcgccgaccttgacggcaaa 130 ||| |||| ||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 146 gtcttggccaccgacccagaccctctccaggacttctgtgtcgccgacctcgacggcaag 205 Query: 131 gcggtctcagtgaa 144 |||||||| ||||| Sbjct: 206 gcggtctcggtgaa 219
>gb|M63223.1|WHTGERMIN Wheat germin 9f-2.8 gene, complete cds Length = 2822 Score = 131 bits (66), Expect = 7e-28 Identities = 117/134 (87%) Strand = Plus / Plus Query: 11 atggggtactccaaaaccctagcggttagcctgttcgccgtgctgctccttgcaccggcc 70 |||||||||||||||||||||| | | |||||||||| ||||| | || || |||||| Sbjct: 1799 atggggtactccaaaaccctagtagctggcctgttcgcaatgctgttactagctccggcc 1858 Query: 71 gtcctggcatccgaccctgaccctctccaggacttctgtgtcgccgaccttgacggcaaa 130 ||| |||| ||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 1859 gtcttggccaccgacccagaccctctccaggacttctgtgtcgccgacctcgacggcaag 1918 Query: 131 gcggtctcagtgaa 144 |||||||| ||||| Sbjct: 1919 gcggtctcggtgaa 1932
>gb|AY864922.1| Triticum aestivum strain Yumai 18 germin-like protein 3 gene, promoter region, 5' UTR and partial cds Length = 1853 Score = 127 bits (64), Expect = 1e-26 Identities = 94/104 (90%) Strand = Plus / Plus Query: 5 caagcaatggggtactccaaaaccctagcggttagcctgttcgccgtgctgctccttgca 64 ||||| ||||| |||||||||| ||||| || | ||||||| ||| ||||||||||||| Sbjct: 1743 caagccatgggttactccaaaaacctaggggctggcctgtttgccatgctgctccttgct 1802 Query: 65 ccggccgtcctggcatccgaccctgaccctctccaggacttctg 108 |||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1803 ccggccgtcctggcctccgaccctgaccctctccaggacttctg 1846
>emb|Y14203.1|HVY14203 Hordeum vulgare mRNA for oxalate oxidase (HvOxOa) Length = 970 Score = 119 bits (60), Expect = 3e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 5 caagcaatggggtactccaaaaccctagcggttagcctgttcgccgtgctgctccttgca 64 ||||||||||| ||||| |||| ||||| || | |||||||| || ||||||||||||| Sbjct: 87 caagcaatgggttactctaaaaacctaggggctggcctgttcaccatgctgctccttgct 146 Query: 65 ccggccgtcctggcatccgaccctgaccctctccaggacttctgtgtcgccgaccttgac 124 |||||| || |||| |||||||||||||||| ||||||||||| ||||| ||||| || Sbjct: 147 ccggccatcatggctaccgaccctgaccctctacaggacttctgcgtcgcggacctcgat 206 Query: 125 ggcaaagcggtctcagtgaa 144 ||||| |||||||| ||||| Sbjct: 207 ggcaaggcggtctcggtgaa 226
>gb|M63224.1|WHTGERMINA Wheat germin 9f-3.8 gene, complete cds Length = 3761 Score = 111 bits (56), Expect = 6e-22 Identities = 119/140 (85%) Strand = Plus / Plus Query: 5 caagcaatggggtactccaaaaccctagcggttagcctgttcgccgtgctgctccttgca 64 ||||||||||||||||| |||| | ||||| || |||| ||| ||||||||||||| Sbjct: 1312 caagcaatggggtactctaaaaacatagcgtccggcatgtttgccatgctgctccttgct 1371 Query: 65 ccggccgtcctggcatccgaccctgaccctctccaggacttctgtgtcgccgaccttgac 124 | ||||||||| | ||| ||||| ||||||||||||||||||||||||||||||| || Sbjct: 1372 tcagccgtcctgtcctccaaccctcaccctctccaggacttctgtgtcgccgacctcgat 1431 Query: 125 ggcaaagcggtctcagtgaa 144 ||||| |||||||| ||||| Sbjct: 1432 ggcaaggcggtctcggtgaa 1451
>gb|L15737.1|BLYGERMIN Barley germin mRNA, partial cds Length = 603 Score = 65.9 bits (33), Expect = 3e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 80 tccgaccctgaccctctccaggacttctgtgtcgccgaccttgacggcaaagcggtctca 139 |||||||| ||||| |||||||||||||| ||||| ||||| || ||||| |||||||| Sbjct: 1 tccgacccagacccactccaggacttctgcgtcgcggacctcgatggcaaggcggtctcg 60 Query: 140 gtgaa 144 ||||| Sbjct: 61 gtgaa 65
>ref|XM_469349.1| Oryza sativa (japonica cultivar-group), mRNA Length = 684 Score = 61.9 bits (31), Expect = 5e-07 Identities = 37/39 (94%) Strand = Plus / Plus Query: 82 cgaccctgaccctctccaggacttctgtgtcgccgacct 120 |||||||||||||||||| |||||||| ||||||||||| Sbjct: 81 cgaccctgaccctctccaagacttctgcgtcgccgacct 119
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 5e-07 Identities = 37/39 (94%) Strand = Plus / Minus Query: 82 cgaccctgaccctctccaggacttctgtgtcgccgacct 120 |||||||||||||||||| |||||||| ||||||||||| Sbjct: 27488531 cgaccctgaccctctccaagacttctgcgtcgccgacct 27488493 Score = 58.0 bits (29), Expect = 8e-06 Identities = 38/41 (92%) Strand = Plus / Minus Query: 89 gaccctctccaggacttctgtgtcgccgaccttgacggcaa 129 |||||||||||||||||||| ||||||||||| ||| |||| Sbjct: 27500448 gaccctctccaggacttctgcgtcgccgacctcgacagcaa 27500408 Score = 58.0 bits (29), Expect = 8e-06 Identities = 38/41 (92%) Strand = Plus / Minus Query: 89 gaccctctccaggacttctgtgtcgccgaccttgacggcaa 129 |||||||||||||||||||| ||||||||||| ||| |||| Sbjct: 27493128 gaccctctccaggacttctgcgtcgccgacctcgacagcaa 27493088
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 5e-07 Identities = 37/39 (94%) Strand = Plus / Minus Query: 82 cgaccctgaccctctccaggacttctgtgtcgccgacct 120 |||||||||||||||||| |||||||| ||||||||||| Sbjct: 27579854 cgaccctgaccctctccaagacttctgcgtcgccgacct 27579816 Score = 58.0 bits (29), Expect = 8e-06 Identities = 38/41 (92%) Strand = Plus / Minus Query: 89 gaccctctccaggacttctgtgtcgccgaccttgacggcaa 129 |||||||||||||||||||| ||||||||||| ||| |||| Sbjct: 27591771 gaccctctccaggacttctgcgtcgccgacctcgacagcaa 27591731 Score = 58.0 bits (29), Expect = 8e-06 Identities = 38/41 (92%) Strand = Plus / Minus Query: 89 gaccctctccaggacttctgtgtcgccgaccttgacggcaa 129 |||||||||||||||||||| ||||||||||| ||| |||| Sbjct: 27584451 gaccctctccaggacttctgcgtcgccgacctcgacagcaa 27584411
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete sequence Length = 123406 Score = 61.9 bits (31), Expect = 5e-07 Identities = 37/39 (94%) Strand = Plus / Plus Query: 82 cgaccctgaccctctccaggacttctgtgtcgccgacct 120 |||||||||||||||||| |||||||| ||||||||||| Sbjct: 61983 cgaccctgaccctctccaagacttctgcgtcgccgacct 62021 Score = 58.0 bits (29), Expect = 8e-06 Identities = 38/41 (92%) Strand = Plus / Plus Query: 89 gaccctctccaggacttctgtgtcgccgaccttgacggcaa 129 |||||||||||||||||||| ||||||||||| ||| |||| Sbjct: 57386 gaccctctccaggacttctgcgtcgccgacctcgacagcaa 57426 Score = 58.0 bits (29), Expect = 8e-06 Identities = 38/41 (92%) Strand = Plus / Plus Query: 89 gaccctctccaggacttctgtgtcgccgaccttgacggcaa 129 |||||||||||||||||||| ||||||||||| ||| |||| Sbjct: 50066 gaccctctccaggacttctgcgtcgccgacctcgacagcaa 50106
>dbj|AK103716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033137P21, full insert sequence Length = 998 Score = 61.9 bits (31), Expect = 5e-07 Identities = 37/39 (94%) Strand = Plus / Plus Query: 82 cgaccctgaccctctccaggacttctgtgtcgccgacct 120 |||||||||||||||||| |||||||| ||||||||||| Sbjct: 207 cgaccctgaccctctccaagacttctgcgtcgccgacct 245
>ref|XM_469352.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1017 Score = 58.0 bits (29), Expect = 8e-06 Identities = 38/41 (92%) Strand = Plus / Plus Query: 89 gaccctctccaggacttctgtgtcgccgaccttgacggcaa 129 |||||||||||||||||||| ||||||||||| ||| |||| Sbjct: 230 gaccctctccaggacttctgcgtcgccgacctcgacagcaa 270
>ref|XM_469350.1| Oryza sativa (japonica cultivar-group), mRNA Length = 690 Score = 58.0 bits (29), Expect = 8e-06 Identities = 38/41 (92%) Strand = Plus / Plus Query: 89 gaccctctccaggacttctgtgtcgccgaccttgacggcaa 129 |||||||||||||||||||| ||||||||||| ||| |||| Sbjct: 94 gaccctctccaggacttctgcgtcgccgacctcgacagcaa 134
>emb|AJ492381.1|LPE492381 Lolium perenne mRNA for oxalate oxidase 4 (oxO4 gene) Length = 828 Score = 58.0 bits (29), Expect = 8e-06 Identities = 62/73 (84%) Strand = Plus / Plus Query: 72 tcctggcatccgaccctgaccctctccaggacttctgtgtcgccgaccttgacggcaaag 131 ||||||| |||||||||| || || ||||||||||| ||||||||||| || || || | Sbjct: 59 tcctggccaccgaccctgatcccctgcaggacttctgcgtcgccgacctggatggaaagg 118 Query: 132 cggtctcagtgaa 144 || |||||||||| Sbjct: 119 cgatctcagtgaa 131
>emb|AJ492380.1|LPE492380 Lolium perenne mRNA for oxalate oxidase 2 (oxO2 gene) Length = 867 Score = 58.0 bits (29), Expect = 8e-06 Identities = 62/73 (84%) Strand = Plus / Plus Query: 72 tcctggcatccgaccctgaccctctccaggacttctgtgtcgccgaccttgacggcaaag 131 ||||||| |||||||||| || || ||||||||||| ||||||||||| || || || | Sbjct: 59 tcctggccaccgaccctgatcccctgcaggacttctgcgtcgccgacctggatggaaagg 118 Query: 132 cggtctcagtgaa 144 || |||||||||| Sbjct: 119 cgatctcagtgaa 131
>dbj|AK059872.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F02, full insert sequence Length = 1028 Score = 58.0 bits (29), Expect = 8e-06 Identities = 38/41 (92%) Strand = Plus / Plus Query: 89 gaccctctccaggacttctgtgtcgccgaccttgacggcaa 129 |||||||||||||||||||| ||||||||||| ||| |||| Sbjct: 241 gaccctctccaggacttctgcgtcgccgacctcgacagcaa 281
>gb|AY650052.1| Triticum monococcum germin-like protein 4 (GLP4) mRNA, complete cds Length = 944 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 80 tccgaccctgaccctctccaggacttctgtgtcgccgac 118 |||||||||| ||||||||||||||| |||||| ||||| Sbjct: 119 tccgaccctggccctctccaggacttttgtgtcaccgac 157
>emb|AJ504848.1|LPE504848 Lolium perenne mRNA for oxalate oxidase (oxo3 gene) Length = 868 Score = 54.0 bits (27), Expect = 1e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 54 tgctccttgcaccggccgtcctggcatccgaccctgaccctctccaggacttctgtgtcg 113 |||||||||| || || ||||||| |||||||||| ||| | ||||||||||| || | Sbjct: 41 tgctccttgctccatccatcctggccaccgaccctgatcctttgcaggacttctgcgttg 100 Query: 114 ccgaccttgacggcaaagcggtctcagtgaa 144 | ||||| ||||||| ||| |||||||||| Sbjct: 101 ctgacctcaacggcaaggcgatctcagtgaa 131
>gb|AF250933.1|AF250933 Hordeum vulgare germin A (GerA) gene, complete cds Length = 1243 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 80 tccgaccctgaccctctccaggacttctgtgtcgccgac 118 ||||| |||||||| ||||||||||| |||||||||||| Sbjct: 283 tccgatcctgacccactccaggacttttgtgtcgccgac 321
>ref|XM_476095.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 693 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 90 accctctccaggacttctgtgtcgccgacc 119 ||||||||||||||||||| |||||||||| Sbjct: 95 accctctccaggacttctgcgtcgccgacc 124
>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07, complete sequence Length = 114135 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 90 accctctccaggacttctgtgtcgccgacc 119 ||||||||||||||||||| |||||||||| Sbjct: 111027 accctctccaggacttctgcgtcgccgacc 111056
>gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636E04, complete sequence Length = 141171 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 90 accctctccaggacttctgtgtcgccgacc 119 ||||||||||||||||||| |||||||||| Sbjct: 41837 accctctccaggacttctgcgtcgccgacc 41866
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 90 accctctccaggacttctgtgtcgccgacc 119 ||||||||||||||||||| |||||||||| Sbjct: 5904263 accctctccaggacttctgcgtcgccgacc 5904292 Score = 38.2 bits (19), Expect = 7.7 Identities = 34/39 (87%) Strand = Plus / Plus Query: 82 cgaccctgaccctctccaggacttctgtgtcgccgacct 120 ||||||||||| ||||||||| |||| ||||| ||||| Sbjct: 11366905 cgaccctgacctgctccaggacatctgcgtcgctgacct 11366943
>emb|AJ291825.1|LPE291825 Lolium perenne mRNA for oxalate oxidase (oxO1 gene) Length = 934 Score = 44.1 bits (22), Expect = 0.13 Identities = 46/54 (85%) Strand = Plus / Plus Query: 10 aatggggtactccaaaaccctagcggttagcctgttcgccgtgctgctccttgc 63 ||||| ||||| |||||||||||||| | |||| |||||| |||| ||||||| Sbjct: 102 aatggcgtacttcaaaaccctagcggctggcctcttcgccttgctattccttgc 155
>emb|AL512363.11| Human DNA sequence from clone RP11-524H19 on chromosome 6 Contains the 3' end of transforming protein P21A (K-RAS) (C-K-RAS) pseudogene, a novel gene, the 5' end of the gene for a novel protein and a CpG island, complete sequence Length = 113075 Score = 42.1 bits (21), Expect = 0.49 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 ccctgaccctctccaggactt 105 ||||||||||||||||||||| Sbjct: 90341 ccctgaccctctccaggactt 90361
>ref|XM_323778.1| Neurospora crassa OR74A hypothetical protein (NCU04426.1) partial mRNA Length = 1515 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgtcctggcatccgaccctg 89 |||||||||||||||||||| Sbjct: 950 cgtcctggcatccgaccctg 969
>ref|XM_952410.1| Neurospora crassa OR74A hypothetical protein (NCU04426.1) partial mRNA Length = 1515 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgtcctggcatccgaccctg 89 |||||||||||||||||||| Sbjct: 950 cgtcctggcatccgaccctg 969
>emb|Y15962.1|HVGLP1 Hordeum vulgare mRNA for germin-like protein 1 Length = 833 Score = 40.1 bits (20), Expect = 2.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ccaggacttctgtgtcgccgacct 120 |||||||||||| ||||||||||| Sbjct: 102 ccaggacttctgcgtcgccgacct 125
>emb|BX908808.1| Neurospora crassa DNA linkage group IV Cosmid contig G21B4 Length = 177225 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgtcctggcatccgaccctg 89 |||||||||||||||||||| Sbjct: 122490 cgtcctggcatccgaccctg 122509
>emb|AJ319659.1|TAE319659 Triticum aestivum mRNA for adenosine diphosphate glucose pyrophosphatase Length = 642 Score = 40.1 bits (20), Expect = 2.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ccaggacttctgtgtcgccgacct 120 |||||||||||| ||||||||||| Sbjct: 75 ccaggacttctgcgtcgccgacct 98
>emb|AJ291451.1|HVU291451 Hordeum vulgare mRNA for adenosine diphosphate glucose pyrophosphatase (sagppase gene) Length = 639 Score = 40.1 bits (20), Expect = 2.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ccaggacttctgtgtcgccgacct 120 |||||||||||| ||||||||||| Sbjct: 72 ccaggacttctgcgtcgccgacct 95
>emb|AJ237943.1|TAE237943 Triticum aestivum mRNA for germin-like protein 2b Length = 948 Score = 40.1 bits (20), Expect = 2.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 ctccaggacttctgtgtcgccgac 118 ||||||||||| |||||||||||| Sbjct: 153 ctccaggacttttgtgtcgccgac 176
>gb|AY098510.1| Ananas comosus germin-like protein mRNA, complete cds Length = 783 Score = 40.1 bits (20), Expect = 2.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 89 gaccctctccaggacttctgtgtcgccgacct 120 |||||||| ||||||||||| |||||| |||| Sbjct: 105 gaccctctgcaggacttctgcgtcgccaacct 136
>ref|XM_480456.1| Oryza sativa (japonica cultivar-group), mRNA Length = 678 Score = 38.2 bits (19), Expect = 7.7 Identities = 31/35 (88%) Strand = Plus / Plus Query: 77 gcatccgaccctgaccctctccaggacttctgtgt 111 ||||| |||||| |||||| |||||||||||||| Sbjct: 67 gcatctgaccctagccctctgcaggacttctgtgt 101
>ref|XM_476264.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 666 Score = 38.2 bits (19), Expect = 7.7 Identities = 34/39 (87%) Strand = Plus / Plus Query: 82 cgaccctgaccctctccaggacttctgtgtcgccgacct 120 ||||||||||| ||||||||| |||| ||||| ||||| Sbjct: 78 cgaccctgacctgctccaggacatctgcgtcgctgacct 116
>gb|AF357202.1| Streptomyces nodosus amphotericin biosynthetic gene cluster, complete sequence Length = 113193 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 ccttgcaccggccgtcctg 76 ||||||||||||||||||| Sbjct: 15656 ccttgcaccggccgtcctg 15638
>ref|XM_600204.2| PREDICTED: Bos taurus similar to potassium channel, subfamily K, member 12 (LOC521931), mRNA Length = 2867 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 2102 gcctgttcgccgtgctgct 2120
>gb|BC047749.1| Homo sapiens potassium channel, subfamily K, member 12, mRNA (cDNA clone MGC:54139 IMAGE:6186991), complete cds Length = 1450 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 690 gcctgttcgccgtgctgct 708
>gb|AC145273.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0055E23, complete sequence Length = 156572 Score = 38.2 bits (19), Expect = 7.7 Identities = 34/39 (87%) Strand = Plus / Plus Query: 82 cgaccctgaccctctccaggacttctgtgtcgccgacct 120 ||||||||||| ||||||||| |||| ||||| ||||| Sbjct: 92182 cgaccctgacctgctccaggacatctgcgtcgctgacct 92220
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 cctgttcgccgtgctgctc 58 ||||||||||||||||||| Sbjct: 5260349 cctgttcgccgtgctgctc 5260367
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 cctgttcgccgtgctgctc 58 ||||||||||||||||||| Sbjct: 5115098 cctgttcgccgtgctgctc 5115116
>ref|NM_022055.1| Homo sapiens potassium channel, subfamily K, member 12 (KCNK12), mRNA Length = 1449 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 662 gcctgttcgccgtgctgct 680
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 cctgttcgccgtgctgctc 58 ||||||||||||||||||| Sbjct: 4969273 cctgttcgccgtgctgctc 4969291
>ref|XM_824419.1| Trypanosoma brucei TREU927 cleavage and polyadenylation specificity factor-like protein (Tb11.01.6170) partial mRNA Length = 4359 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 gcggttagcctgttcgccg 50 ||||||||||||||||||| Sbjct: 4095 gcggttagcctgttcgccg 4077
>ref|XM_538919.2| PREDICTED: Canis familiaris similar to taube nuss (LOC481798), mRNA Length = 1122 Score = 38.2 bits (19), Expect = 7.7 Identities = 25/27 (92%) Strand = Plus / Plus Query: 126 gcaaagcggtctcagtgaatggtcatc 152 ||||||||||||||| | ||||||||| Sbjct: 520 gcaaagcggtctcagaggatggtcatc 546
>ref|XM_538483.2| PREDICTED: Canis familiaris similar to potassium channel, subfamily K, member 12 (LOC481362), mRNA Length = 1445 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 690 gcctgttcgccgtgctgct 708
>gb|AC009600.20| Homo sapiens 2 BAC RP11-436K12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 217304 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 124693 gcctgttcgccgtgctgct 124675
>gb|AY394010.1| Zea mays germin-like protein (glp1) gene, promoter region and complete cds Length = 2490 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 98 caggacttctgtgtcgccgacct 120 ||||||||||| ||||||||||| Sbjct: 1527 caggacttctgcgtcgccgacct 1549
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 1827680 gcctgttcgccgtgctgct 1827662
>gb|AC104390.6| Homo sapiens chromosome 15, clone CTD-2643K12, complete sequence Length = 201225 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 tctccaggacttctgtgtc 112 ||||||||||||||||||| Sbjct: 26140 tctccaggacttctgtgtc 26122
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 109 tgtcgccgaccttgacggc 127 ||||||||||||||||||| Sbjct: 693867 tgtcgccgaccttgacggc 693885
>emb|BX649604.1|MAD7PMMO Methylocystis strain SC2 clone, complete sequence Length = 18385 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 cctgttcgccgtgctgctc 58 ||||||||||||||||||| Sbjct: 11290 cctgttcgccgtgctgctc 11308
>gb|AC008427.9| Homo sapiens chromosome 5 clone CTC-307M15, complete sequence Length = 175501 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 cctgaccctctccaggact 104 ||||||||||||||||||| Sbjct: 144674 cctgaccctctccaggact 144692
>gb|AC124316.32| Mus musculus chromosome 17, clone RP24-222O13, complete sequence Length = 223552 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 32255 gcctgttcgccgtgctgct 32237
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 7.7 Identities = 31/35 (88%) Strand = Plus / Plus Query: 77 gcatccgaccctgaccctctccaggacttctgtgt 111 ||||| |||||| |||||| |||||||||||||| Sbjct: 5232794 gcatctgaccctagccctctgcaggacttctgtgt 5232828
>gb|AF287302.1|AF287302 Homo sapiens tandem pore domain potassium channel THIK-2 (KCNK12) mRNA, complete cds Length = 1449 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 662 gcctgttcgccgtgctgct 680
>gb|AF287300.1|AF287300 Rattus norvegicus tandem pore domain potassium channel THIK-2 (Kcnk12) mRNA, complete cds Length = 1900 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 1151 gcctgttcgccgtgctgct 1169
>ref|NM_022292.1| Rattus norvegicus potassium channel, subfamily K, member 12 (Kcnk12), mRNA Length = 1900 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 1151 gcctgttcgccgtgctgct 1169
>ref|NM_199251.1| Mus musculus potassium channel, subfamily K, member 12 (Kcnk12), mRNA Length = 1952 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 1202 gcctgttcgccgtgctgct 1220
>gb|AC138655.1| Homo sapiens BAC clone RP11-436K12 from 2, complete sequence Length = 139150 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 46540 gcctgttcgccgtgctgct 46522
>gb|AC080032.12| Homo sapiens chromosome 15, clone RP11-349O9, complete sequence Length = 181413 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 94 tctccaggacttctgtgtc 112 ||||||||||||||||||| Sbjct: 32212 tctccaggacttctgtgtc 32230
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 112 cgccgaccttgacggcaaa 130 ||||||||||||||||||| Sbjct: 1940067 cgccgaccttgacggcaaa 1940085
>dbj|AB052939.1| Mus musculus mntk1 mRNA, complete cds Length = 1952 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 gcctgttcgccgtgctgct 57 ||||||||||||||||||| Sbjct: 1202 gcctgttcgccgtgctgct 1220
>dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1099H05 Length = 186036 Score = 38.2 bits (19), Expect = 7.7 Identities = 31/35 (88%) Strand = Plus / Plus Query: 77 gcatccgaccctgaccctctccaggacttctgtgt 111 ||||| |||||| |||||| |||||||||||||| Sbjct: 101150 gcatctgaccctagccctctgcaggacttctgtgt 101184
>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0610E02 Length = 135816 Score = 38.2 bits (19), Expect = 7.7 Identities = 31/35 (88%) Strand = Plus / Plus Query: 77 gcatccgaccctgaccctctccaggacttctgtgt 111 ||||| |||||| |||||| |||||||||||||| Sbjct: 24382 gcatctgaccctagccctctgcaggacttctgtgt 24416
>dbj|AK105351.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A07, full insert sequence Length = 840 Score = 38.2 bits (19), Expect = 7.7 Identities = 34/39 (87%) Strand = Plus / Plus Query: 82 cgaccctgaccctctccaggacttctgtgtcgccgacct 120 ||||||||||| ||||||||| |||| ||||| ||||| Sbjct: 107 cgaccctgacctgctccaggacatctgcgtcgctgacct 145
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 109 tgtcgccgaccttgacggc 127 ||||||||||||||||||| Sbjct: 1240921 tgtcgccgaccttgacggc 1240939
>gb|AF440524.1| Pseudomonas aeruginosa strain SG17M genomic sequence, integrated gene island PAGI-3(SG) Length = 128136 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 tgttcgccgtgctgctcct 60 ||||||||||||||||||| Sbjct: 79425 tgttcgccgtgctgctcct 79407 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 837,228 Number of Sequences: 3902068 Number of extensions: 837228 Number of successful extensions: 76734 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76276 Number of HSP's gapped (non-prelim): 457 length of query: 160 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 138 effective length of database: 17,147,199,772 effective search space: 2366313568536 effective search space used: 2366313568536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)