ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart23e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 44 0.49
2gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 7.7
3ref|NM_102469.3| Arabidopsis thaliana unknown protein AT1G27070 ... 40 7.7
4gb|CP000097.1| Synechococcus sp. CC9902, complete genome 40 7.7
5gb|AC147921.2| Xenopus tropicalis clone CH216-95N3, complete seq... 40 7.7
6emb|AL139320.18| Human DNA sequence from clone RP11-154C3 on chr... 40 7.7
7gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 7.7
8gb|BT000569.1| Arabidopsis thaliana unknown protein (At1g27070/... 40 7.7
9gb|AC138582.22| Pan troglodytes clone rp43-21p1, complete sequence 40 7.7
10gb|AY102120.1| Arabidopsis thaliana At1g27070/T7N9_13 mRNA, comp... 40 7.7
11gb|AC104187.2| Homo sapiens chromosome 3 clone RP11-424N24, comp... 40 7.7
12gb|AC000029.17| Homo sapiens Chromosome 22q11.2 BAC Clone 865e9 ... 40 7.7
13emb|BX815200.1|CNS0AAU6 Arabidopsis thaliana Full-length cDNA Co... 40 7.7
14gb|AC154307.2| Mus musculus BAC clone RP23-377C12 from chromosom... 40 7.7
15dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.7
16gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis thaliana... 40 7.7

>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 247     ccaacagcaccgcctgggtgccgatgaacc 276
               |||||||||||||| ||||||||| |||||
Sbjct: 2411624 ccaacagcaccgccagggtgccgaggaacc 2411595



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 251     cagcaccgcctgggtgccga 270
               ||||||||||||||||||||
Sbjct: 1311876 cagcaccgcctgggtgccga 1311895



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>ref|NM_102469.3| Arabidopsis thaliana unknown protein AT1G27070 mRNA, complete cds
          Length = 2113

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 468  acaccgtcttcaacagcttcagtc 491
            |||||||||||||||||| |||||
Sbjct: 1284 acaccgtcttcaacagctccagtc 1307



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>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 327     ggcatcgatgtcgatgacat 346
               ||||||||||||||||||||
Sbjct: 2095407 ggcatcgatgtcgatgacat 2095388



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>gb|AC147921.2| Xenopus tropicalis clone CH216-95N3, complete sequence
          Length = 133860

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   cctgctgcctgagtgcaaat 137
             ||||||||||||||||||||
Sbjct: 56955 cctgctgcctgagtgcaaat 56974



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>emb|AL139320.18| Human DNA sequence from clone RP11-154C3 on chromosome 13 Contains a
             cytochrome c oxidase subunit IV pseudogene, a novel gene,
             an aldo-keto reductase family 1, member B10 (aldose
             reductase) (AKR1B10) pseudogene, a novel gene, similar to
             RIKEN cDNA 1700086N05 and CpG island, complete sequence
          Length = 112107

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 61    tgatcatgaagacctcctctttgcagtc 88
             |||||||||||||||| | |||||||||
Sbjct: 42545 tgatcatgaagacctcttgtttgcagtc 42572



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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 289     catgctcatcaacgtcgtcgagggcatc 316
               |||||||| ||||||| |||||||||||
Sbjct: 1857855 catgctcagcaacgtcttcgagggcatc 1857828



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>gb|BT000569.1| Arabidopsis thaliana unknown protein  (At1g27070/T7N9_13) mRNA,
            complete cds
          Length = 1140

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 468  acaccgtcttcaacagcttcagtc 491
            |||||||||||||||||| |||||
Sbjct: 1056 acaccgtcttcaacagctccagtc 1079



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>gb|AC138582.22| Pan troglodytes clone rp43-21p1, complete sequence
          Length = 119613

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 138   gcaggtgctagagatcaccatgaactcc 165
             ||||| ||||||||||||| ||||||||
Sbjct: 75924 gcaggagctagagatcaccctgaactcc 75897



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>gb|AY102120.1| Arabidopsis thaliana At1g27070/T7N9_13 mRNA, complete cds
          Length = 2109

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 468  acaccgtcttcaacagcttcagtc 491
            |||||||||||||||||| |||||
Sbjct: 1284 acaccgtcttcaacagctccagtc 1307



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>gb|AC104187.2| Homo sapiens chromosome 3 clone RP11-424N24, complete sequence
          Length = 186052

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 189    agctccctcaagcacatcccagaa 212
              |||||||||||| |||||||||||
Sbjct: 156309 agctccctcaaggacatcccagaa 156286



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>gb|AC000029.17| Homo sapiens Chromosome 22q11.2 BAC Clone 865e9 In GNAZ-BCR Region,
              complete sequence
          Length = 142979

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 138    gcaggtgctagagatcaccatgaactcc 165
              ||||| ||||||||||||| ||||||||
Sbjct: 123833 gcaggagctagagatcaccctgaactcc 123806



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>emb|BX815200.1|CNS0AAU6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS41ZC01 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1978

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 468  acaccgtcttcaacagcttcagtc 491
            |||||||||||||||||| |||||
Sbjct: 1224 acaccgtcttcaacagctccagtc 1247



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>gb|AC154307.2| Mus musculus BAC clone RP23-377C12 from chromosome 9, complete sequence
          Length = 186985

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    ctgcttctgatcatcttgtc 112
             ||||||||||||||||||||
Sbjct: 91321 ctgcttctgatcatcttgtc 91340



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 295     catcaacgtcgtcgagggca 314
               ||||||||||||||||||||
Sbjct: 7981555 catcaacgtcgtcgagggca 7981574



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>gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I,
             complete sequence
          Length = 111566

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 468   acaccgtcttcaacagcttcagtc 491
             |||||||||||||||||| |||||
Sbjct: 39543 acaccgtcttcaacagctccagtc 39520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,654,372
Number of Sequences: 3902068
Number of extensions: 3654372
Number of successful extensions: 67551
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67385
Number of HSP's gapped (non-prelim): 166
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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