Clone Name | bart23e05 |
---|---|
Clone Library Name | barley_pub |
>gb|BT017852.1| Zea mays clone EL01N0511C01.c mRNA sequence Length = 1274 Score = 539 bits (272), Expect = e-150 Identities = 419/468 (89%) Strand = Plus / Plus Query: 98 tccggcgatggagtacgtcaaccctctcaccggattccgcgtcgacgggcgccgccccaa 157 |||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||| Sbjct: 48 tccggcgatggagtacgtgaaccccctcaccggcttccgcgtcgacggccgccgccccaa 107 Query: 158 cgagatgcggcagctcaagggcgaggtcggcgtcgtctccagggccgacggctcggcgct 217 |||||||||| | ||||||||||||||||||||||| | || ||||| |||||||| Sbjct: 108 cgagatgcggtaactcaagggcgaggtcggcgtcgttgtgcgcgcagacgggtcggcgct 167 Query: 218 cttcgagatgggcaacaccagggtcatcgccgccgtctacgggccccgagagatccaaaa 277 || ||||||||||||||||| |||||||||||||||||||| || |||||| | || || Sbjct: 168 gtttgagatgggcaacaccagagtcatcgccgccgtctacggcccgcgagaggttcagaa 227 Query: 278 caggagtcagcaacaaaacaataaagaggctttggtgcgttgtgagtacagaatggcaga 337 || |||||||| ||||| || ||||||||||| |||||||||||||| |||||||| Sbjct: 228 caaaggtcagcaagtaaacagcaaggaggctttggttcgttgtgagtacaggatggcaga 287 Query: 338 atttagcactggggatcgaaggagaaagccaaaaggtgacaggcgatcaacagaaatttc 397 ||||| || || ||||| |||||||| || || |||||||||||||||||||||||||| Sbjct: 288 gtttagtacaggagatcggaggagaaaaccgaagggtgacaggcgatcaacagaaatttc 347 Query: 398 gcttgttattcgacaaacaatggaggcaagcatattaacacatttaatgccacactcaca 457 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 348 tcttgttattcgacagacaatggaggcaagcatattaacacatttaatgccacactcaca 407 Query: 458 gattgacatatttgtccaagttcttcaagctgatggtggaaccaggtctgcatgcatcaa 517 |||||| |||| |||||||||||||||||||||||||||||| ||||| || ||||| || Sbjct: 408 gattgatatatatgtccaagttcttcaagctgatggtggaacaaggtcagcttgcataaa 467 Query: 518 tgctgcaacactagcacttgcagatgctgggattccaatgcgagacat 565 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 468 tgctgcaacactagctcttgcagatgctgggattccaatgcgagacat 515
>ref|XM_450295.1| Oryza sativa (japonica cultivar-group), mRNA Length = 738 Score = 341 bits (172), Expect = 2e-90 Identities = 220/236 (93%) Strand = Plus / Plus Query: 330 atggcagaatttagcactggggatcgaaggagaaagccaaaaggtgacaggcgatcaaca 389 |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 283 atggcagattttagtactggggatcgaaggagaaagccaaagggtgacaggcgatcaaca 342 Query: 390 gaaatttcgcttgttattcgacaaacaatggaggcaagcatattaacacatttaatgcca 449 |||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||| Sbjct: 343 gaaatttcacttgttatccggcaaacaatggaggcaagcattttaacacatttaatgcca 402 Query: 450 cactcacagattgacatatttgtccaagttcttcaagctgatggtggaaccaggtctgca 509 | ||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||| Sbjct: 403 cgttcacagattgatatatttgtccaagttcttcaagctgatggtggtacaagggctgca 462 Query: 510 tgcatcaatgctgcaacactagcacttgcagatgctgggattccaatgcgagacat 565 |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 463 tgcatcaatgctgctacattagcacttgcagatgctgggattcccatgcgagacat 518 Score = 224 bits (113), Expect = 2e-55 Identities = 152/165 (92%) Strand = Plus / Plus Query: 105 atggagtacgtcaaccctctcaccggattccgcgtcgacgggcgccgccccaacgagatg 164 ||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||| Sbjct: 1 atggagtacgtgaaccctctcaccggcttccgcgtcgacggccggcgccccaacgagatg 60 Query: 165 cggcagctcaagggcgaggtcggcgtcgtctccagggccgacggctcggcgctcttcgag 224 |||||||||||||||||||| ||||||||| ||||||| ||||| |||||||| |||||| Sbjct: 61 cggcagctcaagggcgaggtgggcgtcgtcgccagggcagacggatcggcgctgttcgag 120 Query: 225 atgggcaacaccagggtcatcgccgccgtctacgggccccgagag 269 |||||||||||||||||||| ||||| |||||||| || |||||| Sbjct: 121 atgggcaacaccagggtcattgccgctgtctacggccctcgagag 165
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 123 bits (62), Expect = 7e-25 Identities = 74/78 (94%) Strand = Plus / Plus Query: 373 gtgacaggcgatcaacagaaatttcgcttgttattcgacaaacaatggaggcaagcatat 432 ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| | Sbjct: 3907514 gtgacaggcgatcaacagaaatttcacttgttatccggcaaacaatggaggcaagcattt 3907573 Query: 433 taacacatttaatgccac 450 |||||||||||||||||| Sbjct: 3907574 taacacatttaatgccac 3907591 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Plus Query: 311 ggtgcgttgtgagtacagaatggcagaatttagcactggggatcgaaggagaaagccaaa 370 ||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 3906909 ggtgcgttgtgagtataggatggcagattttagtactggggatcgaaggagaaagccaaa 3906968 Query: 371 aggtgacagg 380 ||||||||| Sbjct: 3906969 gggtgacagg 3906978 Score = 97.6 bits (49), Expect = 4e-17 Identities = 58/61 (95%) Strand = Plus / Plus Query: 505 ctgcatgcatcaatgctgcaacactagcacttgcagatgctgggattccaatgcgagaca 564 ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| Sbjct: 3908057 ctgcatgcatcaatgctgctacattagcacttgcagatgctgggattcccatgcgagaca 3908116 Query: 565 t 565 | Sbjct: 3908117 t 3908117 Score = 95.6 bits (48), Expect = 2e-16 Identities = 60/64 (93%) Strand = Plus / Plus Query: 98 tccggcgatggagtacgtcaaccctctcaccggattccgcgtcgacgggcgccgccccaa 157 |||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||| Sbjct: 3905803 tccggcgatggagtacgtgaaccctctcaccggcttccgcgtcgacggccggcgccccaa 3905862 Query: 158 cgag 161 |||| Sbjct: 3905863 cgag 3905866 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 210 tcggcgctcttcgagatgggcaacaccagggtcatcgccgccgtctacgggccccgagag 269 |||||||| |||||||||||||||||||||||||| ||||| |||||||| || |||||| Sbjct: 3906116 tcggcgctgttcgagatgggcaacaccagggtcattgccgctgtctacggccctcgagag 3906175 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 455 acagattgacatatttgtccaagttcttcaagctgatggtgg 496 ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 3907681 acagattgatatatttgtccaagttcttcaagctgatggtgg 3907722 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 160 agatgcggcagctcaagggcgaggtcggcgtcgtctccagggccgacgg 208 ||||||||||||||||||||||||| ||||||||| ||||||| ||||| Sbjct: 3905959 agatgcggcagctcaagggcgaggtgggcgtcgtcgccagggcagacgg 3906007
>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1080A02 Length = 151360 Score = 123 bits (62), Expect = 7e-25 Identities = 74/78 (94%) Strand = Plus / Plus Query: 373 gtgacaggcgatcaacagaaatttcgcttgttattcgacaaacaatggaggcaagcatat 432 ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| | Sbjct: 147030 gtgacaggcgatcaacagaaatttcacttgttatccggcaaacaatggaggcaagcattt 147089 Query: 433 taacacatttaatgccac 450 |||||||||||||||||| Sbjct: 147090 taacacatttaatgccac 147107 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Plus Query: 311 ggtgcgttgtgagtacagaatggcagaatttagcactggggatcgaaggagaaagccaaa 370 ||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 146425 ggtgcgttgtgagtataggatggcagattttagtactggggatcgaaggagaaagccaaa 146484 Query: 371 aggtgacagg 380 ||||||||| Sbjct: 146485 gggtgacagg 146494 Score = 97.6 bits (49), Expect = 4e-17 Identities = 58/61 (95%) Strand = Plus / Plus Query: 505 ctgcatgcatcaatgctgcaacactagcacttgcagatgctgggattccaatgcgagaca 564 ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| Sbjct: 147573 ctgcatgcatcaatgctgctacattagcacttgcagatgctgggattcccatgcgagaca 147632 Query: 565 t 565 | Sbjct: 147633 t 147633 Score = 95.6 bits (48), Expect = 2e-16 Identities = 60/64 (93%) Strand = Plus / Plus Query: 98 tccggcgatggagtacgtcaaccctctcaccggattccgcgtcgacgggcgccgccccaa 157 |||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||| Sbjct: 145319 tccggcgatggagtacgtgaaccctctcaccggcttccgcgtcgacggccggcgccccaa 145378 Query: 158 cgag 161 |||| Sbjct: 145379 cgag 145382 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 210 tcggcgctcttcgagatgggcaacaccagggtcatcgccgccgtctacgggccccgagag 269 |||||||| |||||||||||||||||||||||||| ||||| |||||||| || |||||| Sbjct: 145632 tcggcgctgttcgagatgggcaacaccagggtcattgccgctgtctacggccctcgagag 145691 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 455 acagattgacatatttgtccaagttcttcaagctgatggtgg 496 ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 147197 acagattgatatatttgtccaagttcttcaagctgatggtgg 147238 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 160 agatgcggcagctcaagggcgaggtcggcgtcgtctccagggccgacgg 208 ||||||||||||||||||||||||| ||||||||| ||||||| ||||| Sbjct: 145475 agatgcggcagctcaagggcgaggtgggcgtcgtcgccagggcagacgg 145523
>dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0574F11 Length = 159891 Score = 123 bits (62), Expect = 7e-25 Identities = 74/78 (94%) Strand = Plus / Plus Query: 373 gtgacaggcgatcaacagaaatttcgcttgttattcgacaaacaatggaggcaagcatat 432 ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| | Sbjct: 39026 gtgacaggcgatcaacagaaatttcacttgttatccggcaaacaatggaggcaagcattt 39085 Query: 433 taacacatttaatgccac 450 |||||||||||||||||| Sbjct: 39086 taacacatttaatgccac 39103 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Plus Query: 311 ggtgcgttgtgagtacagaatggcagaatttagcactggggatcgaaggagaaagccaaa 370 ||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 38421 ggtgcgttgtgagtataggatggcagattttagtactggggatcgaaggagaaagccaaa 38480 Query: 371 aggtgacagg 380 ||||||||| Sbjct: 38481 gggtgacagg 38490 Score = 97.6 bits (49), Expect = 4e-17 Identities = 58/61 (95%) Strand = Plus / Plus Query: 505 ctgcatgcatcaatgctgcaacactagcacttgcagatgctgggattccaatgcgagaca 564 ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| Sbjct: 39569 ctgcatgcatcaatgctgctacattagcacttgcagatgctgggattcccatgcgagaca 39628 Query: 565 t 565 | Sbjct: 39629 t 39629 Score = 95.6 bits (48), Expect = 2e-16 Identities = 60/64 (93%) Strand = Plus / Plus Query: 98 tccggcgatggagtacgtcaaccctctcaccggattccgcgtcgacgggcgccgccccaa 157 |||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||| Sbjct: 37315 tccggcgatggagtacgtgaaccctctcaccggcttccgcgtcgacggccggcgccccaa 37374 Query: 158 cgag 161 |||| Sbjct: 37375 cgag 37378 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 210 tcggcgctcttcgagatgggcaacaccagggtcatcgccgccgtctacgggccccgagag 269 |||||||| |||||||||||||||||||||||||| ||||| |||||||| || |||||| Sbjct: 37628 tcggcgctgttcgagatgggcaacaccagggtcattgccgctgtctacggccctcgagag 37687 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 455 acagattgacatatttgtccaagttcttcaagctgatggtgg 496 ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 39193 acagattgatatatttgtccaagttcttcaagctgatggtgg 39234 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 160 agatgcggcagctcaagggcgaggtcggcgtcgtctccagggccgacgg 208 ||||||||||||||||||||||||| ||||||||| ||||||| ||||| Sbjct: 37471 agatgcggcagctcaagggcgaggtgggcgtcgtcgccagggcagacgg 37519
>gb|BT013197.1| Lycopersicon esculentum clone 134353F, mRNA sequence Length = 1105 Score = 99.6 bits (50), Expect = 1e-17 Identities = 176/218 (80%) Strand = Plus / Plus Query: 342 agcactggggatcgaaggagaaagccaaaaggtgacaggcgatcaacagaaatttcgctt 401 |||||||| ||||| ||||||| |||| ||||||||| |||| || || || || ||| Sbjct: 294 agcactggcgatcgccggagaaaaacaaagggtgacaggagatccacggagatatctctt 353 Query: 402 gttattcgacaaacaatggaggcaagcatattaacacatttaatgccacactcacagatt 461 |||||||| || |||||||| || ||||||| ||||| | ||||| | ||| ||||| Sbjct: 354 gttattcgccagacaatggaagcttgcatattgacacacctgatgcctcgctctcagata 413 Query: 462 gacatatttgtccaagttcttcaagctgatggtggaaccaggtctgcatgcatcaatgct 521 ||||| | ||||||||| || ||||| ||||| || || || || |||||||| |||||| Sbjct: 414 gacatttatgtccaagtcctccaagcagatggaggtacaagatcagcatgcataaatgct 473 Query: 522 gcaacactagcacttgcagatgctgggattccaatgcg 559 || ||||| |||||||| || || |||||||| ||||| Sbjct: 474 gccacactggcacttgctgacgccgggattcccatgcg 511
>ref|NM_116027.2| Arabidopsis thaliana RRP41; 3'-5'-exoribonuclease/ RNA binding AT3G61620 (RRP41) mRNA, complete cds Length = 969 Score = 73.8 bits (37), Expect = 6e-10 Identities = 148/185 (80%) Strand = Plus / Plus Query: 375 gacaggcgatcaacagaaatttcgcttgttattcgacaaacaatggaggcaagcatatta 434 ||||||||||||||||| | || ||||| || || || |||||||| || |||||||| Sbjct: 363 gacaggcgatcaacagagctatctcttgtcatccgtcagacaatggaagcttgcatatta 422 Query: 435 acacatttaatgccacactcacagattgacatatttgtccaagttcttcaagctgatggt 494 || | || ||||| ||||| ||||| || || || | || ||||| ||||||||||| Sbjct: 423 accgaattgatgcctcactctcagatcgatattttccttcaggttctacaagctgatgga 482 Query: 495 ggaaccaggtctgcatgcatcaatgctgcaacactagcacttgcagatgctgggattcca 554 ||||| || || || || |||||||| || || ||||| || ||||||||||| |||||| Sbjct: 483 ggaacaagatcagcttgtatcaatgccgcgactctagctctagcagatgctggaattcca 542 Query: 555 atgcg 559 ||||| Sbjct: 543 atgcg 547
>emb|BX823183.1|CNS0A771 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB95ZG05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 919 Score = 73.8 bits (37), Expect = 6e-10 Identities = 148/185 (80%) Strand = Plus / Plus Query: 375 gacaggcgatcaacagaaatttcgcttgttattcgacaaacaatggaggcaagcatatta 434 ||||||||||||||||| | || ||||| || || || |||||||| || |||||||| Sbjct: 302 gacaggcgatcaacagagctatctcttgtcatccgtcagacaatggaagcttgcatatta 361 Query: 435 acacatttaatgccacactcacagattgacatatttgtccaagttcttcaagctgatggt 494 || | || ||||| ||||| ||||| || || || | || ||||| ||||||||||| Sbjct: 362 accgaattgatgcctcactctcagatcgatattttccttcaggttctacaagctgatgga 421 Query: 495 ggaaccaggtctgcatgcatcaatgctgcaacactagcacttgcagatgctgggattcca 554 ||||| || || || || |||||||| || || ||||| || ||||||||||| |||||| Sbjct: 422 ggaacaagatcagcttgtatcaatgccgcgactctagctctagcagatgctggaattcca 481 Query: 555 atgcg 559 ||||| Sbjct: 482 atgcg 486
>gb|BT005485.1| Arabidopsis thaliana clone U51127 putative exonuclease RRP41 (At3g61620) mRNA, complete cds Length = 757 Score = 73.8 bits (37), Expect = 6e-10 Identities = 148/185 (80%) Strand = Plus / Plus Query: 375 gacaggcgatcaacagaaatttcgcttgttattcgacaaacaatggaggcaagcatatta 434 ||||||||||||||||| | || ||||| || || || |||||||| || |||||||| Sbjct: 265 gacaggcgatcaacagagctatctcttgtcatccgtcagacaatggaagcttgcatatta 324 Query: 435 acacatttaatgccacactcacagattgacatatttgtccaagttcttcaagctgatggt 494 || | || ||||| ||||| ||||| || || || | || ||||| ||||||||||| Sbjct: 325 accgaattgatgcctcactctcagatcgatattttccttcaggttctacaagctgatgga 384 Query: 495 ggaaccaggtctgcatgcatcaatgctgcaacactagcacttgcagatgctgggattcca 554 ||||| || || || || |||||||| || || ||||| || ||||||||||| |||||| Sbjct: 385 ggaacaagatcagcttgtatcaatgccgcgactctagctctagcagatgctggaattcca 444 Query: 555 atgcg 559 ||||| Sbjct: 445 atgcg 449
>gb|AF191741.1|AF191741 Arabidopsis thaliana exonuclease RRP41 (RRP41) mRNA, complete cds Length = 942 Score = 73.8 bits (37), Expect = 6e-10 Identities = 148/185 (80%) Strand = Plus / Plus Query: 375 gacaggcgatcaacagaaatttcgcttgttattcgacaaacaatggaggcaagcatatta 434 ||||||||||||||||| | || ||||| || || || |||||||| || |||||||| Sbjct: 336 gacaggcgatcaacagagctatctcttgtcatccgtcagacaatggaagcttgcatatta 395 Query: 435 acacatttaatgccacactcacagattgacatatttgtccaagttcttcaagctgatggt 494 || | || ||||| ||||| ||||| || || || | || ||||| ||||||||||| Sbjct: 396 accgaattgatgcctcactctcagatcgatattttccttcaggttctacaagctgatgga 455 Query: 495 ggaaccaggtctgcatgcatcaatgctgcaacactagcacttgcagatgctgggattcca 554 ||||| || || || || |||||||| || || ||||| || ||||||||||| |||||| Sbjct: 456 ggaacgagatcagcttgtatcaatgccgcgactctagctctagcagatgctggaattcca 515 Query: 555 atgcg 559 ||||| Sbjct: 516 atgcg 520
>dbj|AK118846.1| Arabidopsis thaliana At3g61620 mRNA for putative exonuclease RRP41, complete cds, clone: RAFL21-17-J09 Length = 954 Score = 73.8 bits (37), Expect = 6e-10 Identities = 148/185 (80%) Strand = Plus / Plus Query: 375 gacaggcgatcaacagaaatttcgcttgttattcgacaaacaatggaggcaagcatatta 434 ||||||||||||||||| | || ||||| || || || |||||||| || |||||||| Sbjct: 363 gacaggcgatcaacagagctatctcttgtcatccgtcagacaatggaagcttgcatatta 422 Query: 435 acacatttaatgccacactcacagattgacatatttgtccaagttcttcaagctgatggt 494 || | || ||||| ||||| ||||| || || || | || ||||| ||||||||||| Sbjct: 423 accgaattgatgcctcactctcagatcgatattttccttcaggttctacaagctgatgga 482 Query: 495 ggaaccaggtctgcatgcatcaatgctgcaacactagcacttgcagatgctgggattcca 554 ||||| || || || || |||||||| || || ||||| || ||||||||||| |||||| Sbjct: 483 ggaacaagatcagcttgtatcaatgccgcgactctagctctagcagatgctggaattcca 542 Query: 555 atgcg 559 ||||| Sbjct: 543 atgcg 547
>gb|AY110913.1| Zea mays CL1582_7 mRNA sequence Length = 794 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 439 atttaatgccacactcacagattgacatatttgtccaagtt 479 ||||||||||||||||||||||||| |||| |||||||||| Sbjct: 3 atttaatgccacactcacagattgatatatatgtccaagtt 43 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 545 tgggattccaatgcgagacat 565 ||||||||||||||||||||| Sbjct: 109 tgggattccaatgcgagacat 129
>ref|NM_183638.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 185 cggcgtcgtctccagggccgacg 207 ||||||||||||||||||||||| Sbjct: 468 cggcgtcgtctccagggccgacg 490
>emb|AL132959.1|ATF15G16 Arabidopsis thaliana DNA chromosome 3, BAC clone F15G16 Length = 104868 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 513 atcaatgctgcaacactagcacttgcagatgctgggattccaatgcg 559 |||||||| || || ||||| || ||||||||||| ||||||||||| Sbjct: 13246 atcaatgccgcgactctagctctagcagatgctggaattccaatgcg 13200
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 185 cggcgtcgtctccagggccgacg 207 ||||||||||||||||||||||| Sbjct: 10747544 cggcgtcgtctccagggccgacg 10747522
>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702D12 Length = 137332 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 185 cggcgtcgtctccagggccgacg 207 ||||||||||||||||||||||| Sbjct: 70358 cggcgtcgtctccagggccgacg 70336
>dbj|AK104781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C08, full insert sequence Length = 1331 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 185 cggcgtcgtctccagggccgacg 207 ||||||||||||||||||||||| Sbjct: 555 cggcgtcgtctccagggccgacg 577
>dbj|AK104388.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G02, full insert sequence Length = 1331 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 185 cggcgtcgtctccagggccgacg 207 ||||||||||||||||||||||| Sbjct: 555 cggcgtcgtctccagggccgacg 577
>dbj|AK068755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159G18, full insert sequence Length = 1345 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 185 cggcgtcgtctccagggccgacg 207 ||||||||||||||||||||||| Sbjct: 549 cggcgtcgtctccagggccgacg 571
>tpe|BN000540.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx11 gene for class III peroxidase 11 precursor, exons 1-2 Length = 1255 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 185 cggcgtcgtctccagggccgacg 207 ||||||||||||||||||||||| Sbjct: 679 cggcgtcgtctccagggccgacg 701
>ref|XM_604450.2| PREDICTED: Bos taurus similar to protocadherin gamma subfamily B, 5 isoform 1 precursor (LOC526091), mRNA Length = 2421 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 ccgacggctcggcgctcttcga 223 |||||||||||||||||||||| Sbjct: 1694 ccgacggctcggcgctcttcga 1715
>ref|XM_610752.2| PREDICTED: Bos taurus similar to protocadherin gamma subfamily B, 4 isoform 2 precursor (LOC532241), mRNA Length = 2412 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 ccgacggctcggcgctcttcga 223 |||||||||||||||||||||| Sbjct: 1700 ccgacggctcggcgctcttcga 1721
>ref|XM_588574.2| PREDICTED: Bos taurus similar to protocadherin gamma subfamily A, 6 isoform 1 precursor (LOC511274), mRNA Length = 4536 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 ccgacggctcggcgctcttcga 223 |||||||||||||||||||||| Sbjct: 1604 ccgacggctcggcgctcttcga 1625
>ref|XM_844460.1| PREDICTED: Canis familiaris similar to protocadherin gamma subfamily A, 11 isoform 2 precursor (LOC487185), mRNA Length = 5475 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 ccgacggctcggcgctcttcga 223 |||||||||||||||||||||| Sbjct: 4043 ccgacggctcggcgctcttcga 4064
>ref|XM_844448.1| PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 7 isoform 2 precursor (LOC607682), mRNA Length = 2433 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 ccgacggctcggcgctcttcga 223 |||||||||||||||||||||| Sbjct: 1706 ccgacggctcggcgctcttcga 1727
>ref|XM_844419.1| PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 6 isoform 1 precursor (LOC487183), mRNA Length = 2460 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 ccgacggctcggcgctcttcga 223 |||||||||||||||||||||| Sbjct: 1706 ccgacggctcggcgctcttcga 1727
>ref|XM_844381.1| PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 5 isoform 1 precursor (LOC607624), mRNA Length = 2511 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 ccgacggctcggcgctcttcga 223 |||||||||||||||||||||| Sbjct: 1694 ccgacggctcggcgctcttcga 1715
>ref|XM_844345.1| PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 4 isoform 1 precursor (LOC607598), mRNA Length = 2388 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 ccgacggctcggcgctcttcga 223 |||||||||||||||||||||| Sbjct: 1699 ccgacggctcggcgctcttcga 1720
>ref|XM_844300.1| PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 3 isoform 1 precursor (LOC607565), mRNA Length = 3010 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 ccgacggctcggcgctcttcga 223 |||||||||||||||||||||| Sbjct: 1739 ccgacggctcggcgctcttcga 1760
>ref|XM_844289.1| PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 2 isoform 1 precursor (LOC487181), mRNA Length = 4884 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 ccgacggctcggcgctcttcga 223 |||||||||||||||||||||| Sbjct: 1622 ccgacggctcggcgctcttcga 1643
>ref|XM_844256.1| PREDICTED: Canis familiaris similar to protocadherin gamma subfamily B, 1 isoform 2 precursor (LOC607540), mRNA Length = 2457 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 202 ccgacggctcggcgctcttcga 223 |||||||||||||||||||||| Sbjct: 1700 ccgacggctcggcgctcttcga 1721
>gb|AE014851.1| Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence Length = 251762 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 aagcatattaacacatttaat 445 ||||||||||||||||||||| Sbjct: 37252 aagcatattaacacatttaat 37232
>ref|XM_881652.1| PREDICTED: Bos taurus similar to protocadherin gamma subfamily C, 3 isoform 3, transcript variant 11 (LOC520024), mRNA Length = 3032 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 cgacggctcggcgctcttcga 223 ||||||||||||||||||||| Sbjct: 1704 cgacggctcggcgctcttcga 1724
>emb|CR538722.1| M.truncatula DNA sequence from clone MTH2-11A20 on chromosome 3, complete sequence Length = 118829 Score = 42.1 bits (21), Expect = 2.0 Identities = 60/73 (82%) Strand = Plus / Minus Query: 376 acaggcgatcaacagaaatttcgcttgttattcgacaaacaatggaggcaagcatattaa 435 ||||| |||| || |||||||| || ||||| ||||||| ||||| | | |||| || | Sbjct: 92694 acaggagatccactgaaatttctctagttatcagacaaaccatggaagaacgcatcttga 92635 Query: 436 cacatttaatgcc 448 ||||||||||||| Sbjct: 92634 cacatttaatgcc 92622
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 474 caagttcttcaagctgatggtggaa 498 ||||||||||||| ||||||||||| Sbjct: 434492 caagttcttcaagttgatggtggaa 434468
>gb|AC093473.6| Mus musculus chromosome 5, clone RP23-54H12, complete sequence Length = 208876 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 agccaaaaggtgacaggcgatcaacaga 391 |||||| || |||||||||||||||||| Sbjct: 163123 agccaacagctgacaggcgatcaacaga 163150
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ccgcgtcgacgggcgccgcc 153 |||||||||||||||||||| Sbjct: 1188601 ccgcgtcgacgggcgccgcc 1188620
>gb|AC127266.4| Mus musculus BAC clone RP24-347B12 from chromosome 5, complete sequence Length = 185232 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 agccaaaaggtgacaggcgatcaacaga 391 |||||| || |||||||||||||||||| Sbjct: 96024 agccaacagctgacaggcgatcaacaga 96051
>gb|AC142114.3| Mus musculus BAC clone RP23-421C24 from chromosome 14, complete sequence Length = 196408 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 gacaaacaatggaggcaagcatat 432 ||||||||||||||||||| |||| Sbjct: 59120 gacaaacaatggaggcaaggatat 59143
>gb|AC104318.2| Homo sapiens chromosome 8 clone RP11-291K24, complete sequence Length = 183038 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gcatattaacacatttaatg 446 |||||||||||||||||||| Sbjct: 138783 gcatattaacacatttaatg 138764
>ref|XM_745678.1| Aspergillus fumigatus Af293 CCR4-NOT core complex subunit Not4 (Afu6g08820) partial mRNA Length = 4638 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 gatcgaaggagaaagccaaa 370 |||||||||||||||||||| Sbjct: 2453 gatcgaaggagaaagccaaa 2434
>gb|AC100858.3| Homo sapiens chromosome 8, clone RP11-1082L8, complete sequence Length = 188064 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gcatattaacacatttaatg 446 |||||||||||||||||||| Sbjct: 108155 gcatattaacacatttaatg 108136
>emb|AL391832.10| Human DNA sequence from clone RP11-443B7 on chromosome 1 Contains two novel genes (LOC284527), complete sequence Length = 144648 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 tcgaaggagaaagccaaaag 372 |||||||||||||||||||| Sbjct: 89441 tcgaaggagaaagccaaaag 89460
>gb|AC092978.10| Homo sapiens 3 BAC RP11-340E6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 58001 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 gagaaagccaaaaggtgaca 378 |||||||||||||||||||| Sbjct: 34564 gagaaagccaaaaggtgaca 34545
>gb|DQ397582.1| Cenarchaeum symbiosum clone C19A05, complete sequence Length = 40370 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 534 cttgcagatgctgggattccaatgcgagacat 565 |||||||||||||| || |||||||| ||||| Sbjct: 30260 cttgcagatgctggaataccaatgcgggacat 30229
>gb|DQ397576.1| Cenarchaeum symbiosum clone C13D11, complete sequence Length = 38832 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 534 cttgcagatgctgggattccaatgcgagacat 565 |||||||||||||| || |||||||| ||||| Sbjct: 11637 cttgcagatgctggaataccaatgcgggacat 11668
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 gtcatcgccgccgtctacgg 259 |||||||||||||||||||| Sbjct: 740535 gtcatcgccgccgtctacgg 740516
>gb|AC060809.7| Homo sapiens chromosome 15, clone RP11-404B13, complete sequence Length = 172123 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 aagcatattaacacatttaa 444 |||||||||||||||||||| Sbjct: 158940 aagcatattaacacatttaa 158921
>gb|AF411576.1|AF411573S4 Actinomadura verrucosospora polyketide synthase 2 gene, complete cds Length = 3185 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 242 catcgccgccgtctacgggccccg 265 ||||||||||||| |||||||||| Sbjct: 2184 catcgccgccgtcaacgggccccg 2207
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 catcgccgccgtctacgggccccg 265 ||||||||||||| |||||||||| Sbjct: 2891364 catcgccgccgtcaacgggccccg 2891341
>gb|AC104981.9| Homo sapiens chromosome 17, clone RP11-316M20, complete sequence Length = 193181 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 ccacactcacagattgacat 466 |||||||||||||||||||| Sbjct: 67507 ccacactcacagattgacat 67526
>gb|AY850328.1| Magnaporthe grisea cell division control protein-like protein mRNA, complete cds Length = 1903 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 ctgcatgcatcaatgctgca 524 |||||||||||||||||||| Sbjct: 1783 ctgcatgcatcaatgctgca 1802
>emb|BX510654.19| Zebrafish DNA sequence from clone DKEY-271N12 in linkage group 10, complete sequence Length = 160557 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 acagaatggcagaatttagc 344 |||||||||||||||||||| Sbjct: 139503 acagaatggcagaatttagc 139522
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ccagggtcatcgccgccgtc 254 |||||||||||||||||||| Sbjct: 2980792 ccagggtcatcgccgccgtc 2980773
>emb|AL929246.7| Mouse DNA sequence from clone RP23-34J8 on chromosome 2, complete sequence Length = 142905 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 agcacttgcagatgctggga 549 |||||||||||||||||||| Sbjct: 133429 agcacttgcagatgctggga 133448
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 gctcaagggcgaggtcggcg 189 |||||||||||||||||||| Sbjct: 1292165 gctcaagggcgaggtcggcg 1292146
>dbj|AB070945.1| Streptomyces avermitilis polyketide-5 biosynthetic gene cluster Length = 25150 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 242 catcgccgccgtctacgggccccg 265 ||||||||||||| |||||||||| Sbjct: 3050 catcgccgccgtcaacgggccccg 3073 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,320,436 Number of Sequences: 3902068 Number of extensions: 4320436 Number of successful extensions: 85790 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85356 Number of HSP's gapped (non-prelim): 429 length of query: 568 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 545 effective length of database: 17,143,297,704 effective search space: 9343097248680 effective search space used: 9343097248680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)