ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart23e03 |
|---|---|
| Clone Library Name | barley_pub |
>SYP52_ARATH (Q94KK7) Syntaxin-52 (AtSYP52)| Length = 233 Score = 131 bits (329), Expect = 2e-30 Identities = 62/124 (50%), Positives = 94/124 (75%), Gaps = 1/124 (0%) Frame = +1 Query: 214 MASSADPWVREHGEAARLADDVASMVADRAALPQSGPEAMRHTSAIRRKITILGTRLDTL 393 MASS+DPW+RE+ EA +L++D+ M+++R A +GP+A R SAIRRKITILGTRLD+L Sbjct: 1 MASSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSL 60 Query: 394 EGMLARLPPKS-ITDKELHKRRDMLSNLKSRAKQMAESFNMSTFANREDLLGQSKKAADD 570 + +L ++P K +++KE+++R+DM+ NL+S+ Q+A + NMS FANR+ L G K D Sbjct: 61 QSLLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDA 120 Query: 571 MSRV 582 ++RV Sbjct: 121 INRV 124
>SYP51_ARATH (Q9SA23) Syntaxin-51 (AtSYP51)| Length = 232 Score = 130 bits (328), Expect = 2e-30 Identities = 61/123 (49%), Positives = 92/123 (74%) Frame = +1 Query: 214 MASSADPWVREHGEAARLADDVASMVADRAALPQSGPEAMRHTSAIRRKITILGTRLDTL 393 MASS+D W+R + EA +L++++ M+++R++ +GP+A R SAIRRKITI G +LD+L Sbjct: 1 MASSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSL 60 Query: 394 EGMLARLPPKSITDKELHKRRDMLSNLKSRAKQMAESFNMSTFANREDLLGQSKKAADDM 573 + +LA + K I++KE+++R+DM+ NL+S+A QMA + NMS FANR+ LLG K D M Sbjct: 61 QSLLAEIHGKPISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSM 120 Query: 574 SRV 582 SRV Sbjct: 121 SRV 123
>SYE_AZOSE (Q5NY25) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 465 Score = 35.0 bits (79), Expect = 0.16 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Frame = +1 Query: 244 EHGEAARLADDVASMVADRAALPQSGPEAMRHTSAIRRKITILGTRLDTLEGMLARLPPK 423 +H + ARLA DVAS +A R P++GP + + ++ L D E + P Sbjct: 318 KHSDDARLAADVASRLARRGVDPEAGPRLESVVALYKERVANLNELADAAELYCVAVHPS 377 Query: 424 S--ITDKELHKRRDMLSNLKSRAKQMA 498 + R L++LK+R +A Sbjct: 378 DELLAQHLTDAGRAALASLKARLADVA 404
>OPUBC_BACSU (Q45462) Choline-binding protein precursor| Length = 306 Score = 33.1 bits (74), Expect = 0.60 Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 26/153 (16%) Frame = +1 Query: 190 IGSISLPAMASSADPWVREHGEAARLADDVASMVAD---------RAALPQSGPEAMRHT 342 + SLP ++++AD ++ ++ ++ +ASM+ + G A++ Sbjct: 20 LSGCSLPGLSAAADQTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQQ 79 Query: 343 SAIRRKITILGTRL--DTLEGMLARLPPK------SITDKELHKRRDML---------SN 471 + + +I I TR D L G L P K ++T +E KR D+ + Sbjct: 80 ALMNGEIDIAATRYTGDALTGTLRMEPEKDPDKALALTQREFKKRYDLKWYDSYGFDNTY 139 Query: 472 LKSRAKQMAESFNMSTFANREDLLGQSKKAADD 570 + +K++A+ +++ T ++ + Q K D+ Sbjct: 140 AFTVSKELADQYHLETVSDVKKWAPQLKLGVDN 172
>CLPA_RHOBL (P05444) ClpA homolog protein| Length = 793 Score = 33.1 bits (74), Expect = 0.60 Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 7/87 (8%) Frame = +1 Query: 238 VREHGEAARLADDVASMVADRAALPQSGPE------AMRHTSAIRRKITILGTR-LDTLE 396 +R +A + A ++AS + LP S + A +H + ++ +LGT+ ++ + Sbjct: 401 LRYTADAIKSAVELASRYINDRKLPDSAIDVIDEAGAAQHLVSDSKRKKVLGTKEIEAVV 460 Query: 397 GMLARLPPKSITDKELHKRRDMLSNLK 477 +AR+PP++++ + RD+ LK Sbjct: 461 AKIARIPPRNVSKDDAETLRDLERTLK 487
>RAD50_METTH (O26640) DNA double-strand break repair rad50 ATPase| Length = 837 Score = 32.3 bits (72), Expect = 1.0 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +1 Query: 436 KELHKRRDMLSNLKSRAKQMAESFNMSTFANREDLLGQSKKAADDMSRV 582 KE H+RR+ L N++ R +Q+ E A E L+ + K A D ++V Sbjct: 495 KECHRRRESLDNIRERIRQIEEG-----KAESEKLIEELKDAESDFNKV 538
>CLPA_ECOLI (P0ABH9) ATP-dependent Clp protease ATP-binding subunit clpA| Length = 758 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%) Frame = +1 Query: 238 VREHGEAARLADDVASMVADRAALPQSGPEAMRHTSA-------IRRKITILGTRLDTLE 396 VR +A R A ++A + LP + + A +RK T+ ++++ Sbjct: 371 VRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 Query: 397 GMLARLPPKSITDKELHKRRDMLSNLKSRAKQM 495 +AR+P KS++ + RD L NL R K + Sbjct: 431 ARIARIPEKSVSQSD----RDTLKNLGDRLKML 459
>CLPA_ECOL6 (P0ABI0) ATP-dependent Clp protease ATP-binding subunit clpA| Length = 758 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%) Frame = +1 Query: 238 VREHGEAARLADDVASMVADRAALPQSGPEAMRHTSA-------IRRKITILGTRLDTLE 396 VR +A R A ++A + LP + + A +RK T+ ++++ Sbjct: 371 VRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 Query: 397 GMLARLPPKSITDKELHKRRDMLSNLKSRAKQM 495 +AR+P KS++ + RD L NL R K + Sbjct: 431 ARIARIPEKSVSQSD----RDTLKNLGDRLKML 459
>CLPA_ECO57 (P0ABI1) ATP-dependent Clp protease ATP-binding subunit clpA| Length = 758 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%) Frame = +1 Query: 238 VREHGEAARLADDVASMVADRAALPQSGPEAMRHTSA-------IRRKITILGTRLDTLE 396 VR +A R A ++A + LP + + A +RK T+ ++++ Sbjct: 371 VRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 Query: 397 GMLARLPPKSITDKELHKRRDMLSNLKSRAKQM 495 +AR+P KS++ + RD L NL R K + Sbjct: 431 ARIARIPEKSVSQSD----RDTLKNLGDRLKML 459
>PYRD_MYCLE (P46727) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 356 Score = 31.2 bits (69), Expect = 2.3 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 1/101 (0%) Frame = +1 Query: 178 PEEPIGSISLPAMASSADPWVREHGEAARLADDVASMVADRAALPQSGPEAMRHTSAIRR 357 PE PIG A+ A V ++ +ARL +AS + + P + +R A+ Sbjct: 136 PEVPIGVNISKTKATPASHTVDDYRASARLVGPLASYLVVNVSSPNT--PGLRDLQAVES 193 Query: 358 -KITILGTRLDTLEGMLARLPPKSITDKELHKRRDMLSNLK 477 + +LG +T +L ++ P I+D E+ D+ L+ Sbjct: 194 LRAILLGVLAETSVPVLVKIAP-DISDSEIDDITDLAVELR 233
>MYOC_MACFA (Q863A3) Myocilin precursor (Trabecular meshwork-induced| glucocorticoid response protein) Length = 491 Score = 30.8 bits (68), Expect = 3.0 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Frame = +1 Query: 286 MVADRAALPQSGPEAM-RHTSAIRRKITILGTRLDTLEGMLAR-LPPKSITDKELHKRRD 459 + DRAA PQ PE + R +RR+ L T+ LE + L KS+ ++E + R Sbjct: 89 LTLDRAAGPQETPEGLQRELGTLRRERDQLETQTRELETAYSNLLRDKSVLEEEKKRLRQ 148 Query: 460 MLSNLKSRAKQMAE 501 NL R + ++ Sbjct: 149 ENENLARRLESSSQ 162
>RBLL1_RHOPA (Q6N7T7) Ribulose bisphosphate carboxylase-like protein 1| (RuBisCO-like protein) Length = 368 Score = 30.8 bits (68), Expect = 3.0 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +2 Query: 437 RSCISAETCFLI*NLEQNRWRKVSTCQPSPTGRICLVRVRKLL 565 R + ETC + + + W + C P P G I + R+++LL Sbjct: 288 RFAYTPETCRALADAARRDWHDLKPCLPVPAGGIAIDRIKELL 330
>Y2666_MYCBO (P65036) Hypothetical protein Mb2666c| Length = 161 Score = 29.6 bits (65), Expect = 6.6 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Frame = +1 Query: 208 PAMASSADPWVREHGEAARLADDVASMVADRAALPQSGPEAMRHTSAIRRKITILGTRLD 387 PA++++ P H E ++ D +A+++ PQ P + R T+L D Sbjct: 55 PALSAAGKPITGTHAEHRQVVDQLATLL----RTPQRAPGYEEEWNVFR---TVLEAHAD 107 Query: 388 TLE-GMLARLPPKSITDKELHKRRDMLS 468 E M+ P ITD EL + D ++ Sbjct: 108 VEERDMIPAPTPVHITDAELEELGDKMA 135
>Y2633_MYCTU (P65035) Hypothetical protein Rv2633c/MT2709| Length = 161 Score = 29.6 bits (65), Expect = 6.6 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Frame = +1 Query: 208 PAMASSADPWVREHGEAARLADDVASMVADRAALPQSGPEAMRHTSAIRRKITILGTRLD 387 PA++++ P H E ++ D +A+++ PQ P + R T+L D Sbjct: 55 PALSAAGKPITGTHAEHRQVVDQLATLL----RTPQRAPGYEEEWNVFR---TVLEAHAD 107 Query: 388 TLE-GMLARLPPKSITDKELHKRRDMLS 468 E M+ P ITD EL + D ++ Sbjct: 108 VEERDMIPAPTPVHITDAELEELGDKMA 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.128 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,304,450 Number of Sequences: 219361 Number of extensions: 1183517 Number of successful extensions: 3345 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3209 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3344 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
