ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart23e01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187673.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 924 Score = 331 bits (167), Expect = 1e-87 Identities = 203/215 (94%) Strand = Plus / Plus Query: 231 gtcgtgcgggctgggcgggaagaagcggcggctggcgctggagcaggtgcgcgcgctgga 290 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 105 gtcgtgcgggctgggcgagaagaagcggcggctggcgctggagcaggtgcgcgctctgga 164 Query: 291 gcgcagcttcgaggcggacaacaagctggacccggagcgcaaggcccgcatcgcccgcga 350 ||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 165 gcggagcttcgacacggacaacaagctggacccggaccgcaaggcccgcatcgcgcgcga 224 Query: 351 cctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaa 410 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 225 cctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcccggtggaa 284 Query: 411 gacaaagcagctcgagcgcgacttcaacgccctcc 445 ||| ||||||||||||||||||||| |||||||| Sbjct: 285 gacgaagcagctcgagcgcgacttcgccgccctcc 319
>gb|AY554032.1| Oryza sativa (japonica cultivar-group) clone R10191 Hox13 (hox13) mRNA, partial cds Length = 419 Score = 331 bits (167), Expect = 1e-87 Identities = 203/215 (94%) Strand = Plus / Plus Query: 231 gtcgtgcgggctgggcgggaagaagcggcggctggcgctggagcaggtgcgcgcgctgga 290 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 33 gtcgtgcgggctgggcgagaagaagcggcggctggcgctggagcaggtgcgcgctctgga 92 Query: 291 gcgcagcttcgaggcggacaacaagctggacccggagcgcaaggcccgcatcgcccgcga 350 ||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 93 gcggagcttcgacacggacaacaagctggacccggaccgcaaggcccgcatcgcgcgcga 152 Query: 351 cctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaa 410 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 153 cctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcccggtggaa 212 Query: 411 gacaaagcagctcgagcgcgacttcaacgccctcc 445 ||| ||||||||||||||||||||| |||||||| Sbjct: 213 gacgaagcagctcgagcgcgacttcgccgccctcc 247
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 331 bits (167), Expect = 1e-87 Identities = 203/215 (94%) Strand = Plus / Plus Query: 231 gtcgtgcgggctgggcgggaagaagcggcggctggcgctggagcaggtgcgcgcgctgga 290 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4635286 gtcgtgcgggctgggcgagaagaagcggcggctggcgctggagcaggtgcgcgctctgga 4635345 Query: 291 gcgcagcttcgaggcggacaacaagctggacccggagcgcaaggcccgcatcgcccgcga 350 ||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 4635346 gcggagcttcgacacggacaacaagctggacccggaccgcaaggcccgcatcgcgcgcga 4635405 Query: 351 cctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaa 410 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4635406 cctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcccggtggaa 4635465 Query: 411 gacaaagcagctcgagcgcgacttcaacgccctcc 445 ||| ||||||||||||||||||||| |||||||| Sbjct: 4635466 gacgaagcagctcgagcgcgacttcgccgccctcc 4635500 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 341 tcgcccgcgacctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcg 400 ||||||||| ||||| ||||| ||||| ||||| ||| ||||||||||||||||||||| Sbjct: 3768068 tcgcccgcgcgctcgggctgcagccgcgtcaggtggccatctggttccagaaccgccgcg 3768009 Query: 401 cccgctggaagacaaagcagct 422 | | |||||||| |||||||| Sbjct: 3768008 cgaggtggaagacgaagcagct 3767987 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 370 caggtcgccgtctggttccagaaccgccgcgcccgc 405 |||||||||||||||||||||||||||||||||||| Sbjct: 5149836 caggtcgccgtctggttccagaaccgccgcgcccgc 5149801 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 ggcgggaagaagcggcggctggcg 267 ||||||||||||||||||| |||| Sbjct: 33701439 ggcgggaagaagcggcggccggcg 33701462 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 agcggcggctggcgctggag 273 |||||||||||||||||||| Sbjct: 1797770 agcggcggctggcgctggag 1797751
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 331 bits (167), Expect = 1e-87 Identities = 203/215 (94%) Strand = Plus / Plus Query: 231 gtcgtgcgggctgggcgggaagaagcggcggctggcgctggagcaggtgcgcgcgctgga 290 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4635401 gtcgtgcgggctgggcgagaagaagcggcggctggcgctggagcaggtgcgcgctctgga 4635460 Query: 291 gcgcagcttcgaggcggacaacaagctggacccggagcgcaaggcccgcatcgcccgcga 350 ||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 4635461 gcggagcttcgacacggacaacaagctggacccggaccgcaaggcccgcatcgcgcgcga 4635520 Query: 351 cctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaa 410 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4635521 cctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcccggtggaa 4635580 Query: 411 gacaaagcagctcgagcgcgacttcaacgccctcc 445 ||| ||||||||||||||||||||| |||||||| Sbjct: 4635581 gacgaagcagctcgagcgcgacttcgccgccctcc 4635615 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 341 tcgcccgcgacctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcg 400 ||||||||| ||||| ||||| ||||| ||||| ||| ||||||||||||||||||||| Sbjct: 3768179 tcgcccgcgcgctcgggctgcagccgcgtcaggtggccatctggttccagaaccgccgcg 3768120 Query: 401 cccgctggaagacaaagcagct 422 | | |||||||| |||||||| Sbjct: 3768119 cgaggtggaagacgaagcagct 3768098 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 370 caggtcgccgtctggttccagaaccgccgcgcccgc 405 |||||||||||||||||||||||||||||||||||| Sbjct: 5149053 caggtcgccgtctggttccagaaccgccgcgcccgc 5149018 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 ggcgggaagaagcggcggctggcg 267 ||||||||||||||||||| |||| Sbjct: 33791911 ggcgggaagaagcggcggccggcg 33791934 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 agcggcggctggcgctggag 273 |||||||||||||||||||| Sbjct: 1797768 agcggcggctggcgctggag 1797749
>dbj|AK105644.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F05, full insert sequence Length = 1573 Score = 331 bits (167), Expect = 1e-87 Identities = 203/215 (94%) Strand = Plus / Plus Query: 231 gtcgtgcgggctgggcgggaagaagcggcggctggcgctggagcaggtgcgcgcgctgga 290 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 484 gtcgtgcgggctgggcgagaagaagcggcggctggcgctggagcaggtgcgcgctctgga 543 Query: 291 gcgcagcttcgaggcggacaacaagctggacccggagcgcaaggcccgcatcgcccgcga 350 ||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 544 gcggagcttcgacacggacaacaagctggacccggaccgcaaggcccgcatcgcgcgcga 603 Query: 351 cctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaa 410 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 604 cctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcccggtggaa 663 Query: 411 gacaaagcagctcgagcgcgacttcaacgccctcc 445 ||| ||||||||||||||||||||| |||||||| Sbjct: 664 gacgaagcagctcgagcgcgacttcgccgccctcc 698
>dbj|AK101601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051J21, full insert sequence Length = 1534 Score = 331 bits (167), Expect = 1e-87 Identities = 203/215 (94%) Strand = Plus / Plus Query: 231 gtcgtgcgggctgggcgggaagaagcggcggctggcgctggagcaggtgcgcgcgctgga 290 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 485 gtcgtgcgggctgggcgagaagaagcggcggctggcgctggagcaggtgcgcgctctgga 544 Query: 291 gcgcagcttcgaggcggacaacaagctggacccggagcgcaaggcccgcatcgcccgcga 350 ||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 545 gcggagcttcgacacggacaacaagctggacccggaccgcaaggcccgcatcgcgcgcga 604 Query: 351 cctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaa 410 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 605 cctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcccggtggaa 664 Query: 411 gacaaagcagctcgagcgcgacttcaacgccctcc 445 ||| ||||||||||||||||||||| |||||||| Sbjct: 665 gacgaagcagctcgagcgcgacttcgccgccctcc 699
>dbj|AK101522.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046N04, full insert sequence Length = 1577 Score = 331 bits (167), Expect = 1e-87 Identities = 203/215 (94%) Strand = Plus / Plus Query: 231 gtcgtgcgggctgggcgggaagaagcggcggctggcgctggagcaggtgcgcgcgctgga 290 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 481 gtcgtgcgggctgggcgagaagaagcggcggctggcgctggagcaggtgcgcgctctgga 540 Query: 291 gcgcagcttcgaggcggacaacaagctggacccggagcgcaaggcccgcatcgcccgcga 350 ||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 541 gcggagcttcgacacggacaacaagctggacccggaccgcaaggcccgcatcgcgcgcga 600 Query: 351 cctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaa 410 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 601 cctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcccggtggaa 660 Query: 411 gacaaagcagctcgagcgcgacttcaacgccctcc 445 ||| ||||||||||||||||||||| |||||||| Sbjct: 661 gacgaagcagctcgagcgcgacttcgccgccctcc 695
>dbj|AK060119.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F01, full insert sequence Length = 1214 Score = 331 bits (167), Expect = 1e-87 Identities = 203/215 (94%) Strand = Plus / Plus Query: 231 gtcgtgcgggctgggcgggaagaagcggcggctggcgctggagcaggtgcgcgcgctgga 290 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 163 gtcgtgcgggctgggcgagaagaagcggcggctggcgctggagcaggtgcgcgctctgga 222 Query: 291 gcgcagcttcgaggcggacaacaagctggacccggagcgcaaggcccgcatcgcccgcga 350 ||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 223 gcggagcttcgacacggacaacaagctggacccggaccgcaaggcccgcatcgcgcgcga 282 Query: 351 cctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaa 410 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 283 cctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcccggtggaa 342 Query: 411 gacaaagcagctcgagcgcgacttcaacgccctcc 445 ||| ||||||||||||||||||||| |||||||| Sbjct: 343 gacgaagcagctcgagcgcgacttcgccgccctcc 377
>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09, complete sequence Length = 148894 Score = 331 bits (167), Expect = 1e-87 Identities = 203/215 (94%) Strand = Plus / Plus Query: 231 gtcgtgcgggctgggcgggaagaagcggcggctggcgctggagcaggtgcgcgcgctgga 290 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct: 76241 gtcgtgcgggctgggcgagaagaagcggcggctggcgctggagcaggtgcgcgctctgga 76300 Query: 291 gcgcagcttcgaggcggacaacaagctggacccggagcgcaaggcccgcatcgcccgcga 350 ||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 76301 gcggagcttcgacacggacaacaagctggacccggaccgcaaggcccgcatcgcgcgcga 76360 Query: 351 cctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaa 410 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 76361 cctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcccggtggaa 76420 Query: 411 gacaaagcagctcgagcgcgacttcaacgccctcc 445 ||| ||||||||||||||||||||| |||||||| Sbjct: 76421 gacgaagcagctcgagcgcgacttcgccgccctcc 76455
>ref|NM_196163.1| Oryza sativa (japonica cultivar-group) putative homeodomain leucine zipper protein (OSJNBa0095C06.14), mRNA Length = 888 Score = 256 bits (129), Expect = 6e-65 Identities = 180/197 (91%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| Sbjct: 162 gaagaagcggcggctggcggcggagcaggtgcgggcgctggagcggagcttcgaggcgga 221 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||| || Sbjct: 222 caacaagctggacccggagcggaaggcccggatcgcccgcgaccttcgcctccaccctcg 281 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 ||||||||||||||||||||||||||||||||| | |||||||| |||||| ||||||| Sbjct: 282 ccaggtcgccgtctggttccagaaccgccgcgcgaggtggaagaccaagcagatcgagcg 341 Query: 429 cgacttcaacgccctcc 445 ||||||| |||||||| Sbjct: 342 cgacttcgccgccctcc 358
>gb|AY346329.1| Oryza sativa (indica cultivar-group) homeodomain leucine-zipper protein Hox8 mRNA, complete cds Length = 1272 Score = 256 bits (129), Expect = 6e-65 Identities = 180/197 (91%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| Sbjct: 354 gaagaagcggcggctggcggcggagcaggtgcgggcgctggagcggagcttcgaggcgga 413 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||| || Sbjct: 414 caacaagctggacccggagcggaaggcccggatcgcccgcgaccttcgcctccaccctcg 473 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 ||||||||||||||||||||||||||||||||| | |||||||| |||||| ||||||| Sbjct: 474 ccaggtcgccgtctggttccagaaccgccgcgcgaggtggaagaccaagcagatcgagcg 533 Query: 429 cgacttcaacgccctcc 445 ||||||| |||||||| Sbjct: 534 cgacttcgccgccctcc 550
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence Length = 156159 Score = 256 bits (129), Expect = 6e-65 Identities = 180/197 (91%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| Sbjct: 110485 gaagaagcggcggctggcggcggagcaggtgcgggcgctggagcggagcttcgaggcgga 110544 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||| || Sbjct: 110545 caacaagctggacccggagcggaaggcccggatcgcccgcgaccttcgcctccaccctcg 110604 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 ||||||||||||||||||||||||||||||||| | |||||||| |||||| ||||||| Sbjct: 110605 ccaggtcgccgtctggttccagaaccgccgcgcgaggtggaagaccaagcagatcgagcg 110664 Query: 429 cgacttcaacgccctcc 445 ||||||| |||||||| Sbjct: 110665 cgacttcgccgccctcc 110681
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 256 bits (129), Expect = 6e-65 Identities = 180/197 (91%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| Sbjct: 11526492 gaagaagcggcggctggcggcggagcaggtgcgggcgctggagcggagcttcgaggcgga 11526551 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||| || Sbjct: 11526552 caacaagctggacccggagcggaaggcccggatcgcccgcgaccttcgcctccaccctcg 11526611 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 ||||||||||||||||||||||||||||||||| | |||||||| |||||| ||||||| Sbjct: 11526612 ccaggtcgccgtctggttccagaaccgccgcgcgaggtggaagaccaagcagatcgagcg 11526671 Query: 429 cgacttcaacgccctcc 445 ||||||| |||||||| Sbjct: 11526672 cgacttcgccgccctcc 11526688 Score = 97.6 bits (49), Expect = 3e-17 Identities = 145/177 (81%) Strand = Plus / Plus Query: 269 tggagcaggtgcgcgcgctggagcgcagcttcgaggcggacaacaagctggacccggagc 328 ||||||||||| | |||||||||| ||||||||| | | ||||||||||| ||||||| Sbjct: 13289969 tggagcaggtgaggacgctggagcggagcttcgagtccgggaacaagctggagccggagc 13290028 Query: 329 gcaaggcccgcatcgcccgcgacctcggcctgcacccgcgccaggtcgccgtctggttcc 388 | ||||| | | || |||| || || ||||| ||||| ||||| ||| ||||||||| Sbjct: 13290029 ggaaggcgcagctggcgcgcgcgctggggctgcagccgcggcaggtggccatctggttcc 13290088 Query: 389 agaaccgccgcgcccgctggaagacaaagcagctcgagcgcgacttcaacgccctcc 445 ||||||||||||| | |||||||| |||||||||||| |||||| ||||||||| Sbjct: 13290089 agaaccgccgcgcgaggtggaagacgaagcagctcgagaaggacttcgacgccctcc 13290145
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 256 bits (129), Expect = 6e-65 Identities = 180/197 (91%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| Sbjct: 11532932 gaagaagcggcggctggcggcggagcaggtgcgggcgctggagcggagcttcgaggcgga 11532991 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||| || Sbjct: 11532992 caacaagctggacccggagcggaaggcccggatcgcccgcgaccttcgcctccaccctcg 11533051 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 ||||||||||||||||||||||||||||||||| | |||||||| |||||| ||||||| Sbjct: 11533052 ccaggtcgccgtctggttccagaaccgccgcgcgaggtggaagaccaagcagatcgagcg 11533111 Query: 429 cgacttcaacgccctcc 445 ||||||| |||||||| Sbjct: 11533112 cgacttcgccgccctcc 11533128 Score = 97.6 bits (49), Expect = 3e-17 Identities = 145/177 (81%) Strand = Plus / Plus Query: 269 tggagcaggtgcgcgcgctggagcgcagcttcgaggcggacaacaagctggacccggagc 328 ||||||||||| | |||||||||| ||||||||| | | ||||||||||| ||||||| Sbjct: 13297309 tggagcaggtgaggacgctggagcggagcttcgagtccgggaacaagctggagccggagc 13297368 Query: 329 gcaaggcccgcatcgcccgcgacctcggcctgcacccgcgccaggtcgccgtctggttcc 388 | ||||| | | || |||| || || ||||| ||||| ||||| ||| ||||||||| Sbjct: 13297369 ggaaggcgcagctggcgcgcgcgctggggctgcagccgcggcaggtggccatctggttcc 13297428 Query: 389 agaaccgccgcgcccgctggaagacaaagcagctcgagcgcgacttcaacgccctcc 445 ||||||||||||| | |||||||| |||||||||||| |||||| ||||||||| Sbjct: 13297429 agaaccgccgcgcgaggtggaagacgaagcagctcgagaaggacttcgacgccctcc 13297485
>gb|DQ353855.1| Triticum aestivum homeodomain-leucine zipper transcription factor TaHDZipI-1 mRNA, complete cds Length = 963 Score = 224 bits (113), Expect = 2e-55 Identities = 175/193 (90%), Gaps = 2/193 (1%) Strand = Plus / Plus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||| || Sbjct: 159 gaagaagcggcggctgagcgc-ggagcaggtgcgcgccctggagcggagcttcgaggtgg 217 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | ||||||||||| |||||||||||||| || | || |||||||| |||||||| |||| Sbjct: 218 agaacaagctggagccggagcgcaaggcgcggctggcgcgcgaccttggcctgcagccgc 277 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 ||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct: 278 gccaggtcgccgtctggttccagaaccgccgggcgcgctggaagaccaagcagctcgagc 337 Query: 428 gcgacttcaacgc 440 |||||| |||||| Sbjct: 338 gcgactacaacgc 350
>ref|XM_482997.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1412 Score = 218 bits (110), Expect = 1e-53 Identities = 169/186 (90%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||| Sbjct: 623 gaagaagcggcggctgagcg-tggagcaggtgcgcgcgctggagcggagcttcgagacgg 681 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | ||||||||||| |||||||| ||||| || | || ||||||||||| ||||| |||| Sbjct: 682 agaacaagctggagccggagcggaaggcgcggctggcgcgcgacctcgggctgcagccgc 741 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 742 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 801 Query: 428 gcgact 433 |||||| Sbjct: 802 gcgact 807
>ref|XM_507271.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0092C08.26 mRNA Length = 1916 Score = 218 bits (110), Expect = 1e-53 Identities = 169/186 (90%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||| Sbjct: 620 gaagaagcggcggctgagcg-tggagcaggtgcgcgcgctggagcggagcttcgagacgg 678 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | ||||||||||| |||||||| ||||| || | || ||||||||||| ||||| |||| Sbjct: 679 agaacaagctggagccggagcggaaggcgcggctggcgcgcgacctcgggctgcagccgc 738 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 739 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 798 Query: 428 gcgact 433 |||||| Sbjct: 799 gcgact 804
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 218 bits (110), Expect = 1e-53 Identities = 169/186 (90%), Gaps = 2/186 (1%) Strand = Plus / Minus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||| Sbjct: 23797510 gaagaagcggcggctgagcg-tggagcaggtgcgcgcgctggagcggagcttcgagacgg 23797452 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | ||||||||||| |||||||| ||||| || | || ||||||||||| ||||| |||| Sbjct: 23797451 agaacaagctggagccggagcggaaggcgcggctggcgcgcgacctcgggctgcagccgc 23797392 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 23797391 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 23797332 Query: 428 gcgact 433 |||||| Sbjct: 23797331 gcgact 23797326 Score = 157 bits (79), Expect = 4e-35 Identities = 160/187 (85%) Strand = Plus / Minus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||| Sbjct: 19880300 gaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagcttcgaggagga 19880241 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||| |||||||| ||| | |||||||| ||||||| || ||| || Sbjct: 19880240 gaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcatggccccccg 19880181 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 19880180 gcaggtcgccgtctggttccagaaccgccgcgcccgctggaagaccaagcagctcgagca 19880121 Query: 429 cgacttc 435 ||||||| Sbjct: 19880120 cgacttc 19880114 Score = 48.1 bits (24), Expect = 0.029 Identities = 33/36 (91%) Strand = Plus / Minus Query: 361 cacccgcgccaggtcgccgtctggttccagaaccgc 396 ||||| |||||||||||||| |||||| |||||||| Sbjct: 22436671 caccctcgccaggtcgccgtttggttctagaaccgc 22436636 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 381 ctggttccagaaccgccgcgcccgct 406 ||||||||||||||||||| |||||| Sbjct: 8633969 ctggttccagaaccgccgctcccgct 8633944 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 gtctggttccagaaccgccg 398 |||||||||||||||||||| Sbjct: 22822900 gtctggttccagaaccgccg 22822881
>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08 Length = 131049 Score = 218 bits (110), Expect = 1e-53 Identities = 169/186 (90%), Gaps = 2/186 (1%) Strand = Plus / Minus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||| Sbjct: 86710 gaagaagcggcggctgagcg-tggagcaggtgcgcgcgctggagcggagcttcgagacgg 86652 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | ||||||||||| |||||||| ||||| || | || ||||||||||| ||||| |||| Sbjct: 86651 agaacaagctggagccggagcggaaggcgcggctggcgcgcgacctcgggctgcagccgc 86592 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 86591 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 86532 Query: 428 gcgact 433 |||||| Sbjct: 86531 gcgact 86526
>dbj|AK106818.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D05, full insert sequence Length = 1927 Score = 218 bits (110), Expect = 1e-53 Identities = 169/186 (90%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||| Sbjct: 620 gaagaagcggcggctgagcg-tggagcaggtgcgcgcgctggagcggagcttcgagacgg 678 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | ||||||||||| |||||||| ||||| || | || ||||||||||| ||||| |||| Sbjct: 679 agaacaagctggagccggagcggaaggcgcggctggcgcgcgacctcgggctgcagccgc 738 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 739 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 798 Query: 428 gcgact 433 |||||| Sbjct: 799 gcgact 804
>dbj|AK068244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013140I04, full insert sequence Length = 1412 Score = 218 bits (110), Expect = 1e-53 Identities = 169/186 (90%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||| Sbjct: 623 gaagaagcggcggctgagcg-tggagcaggtgcgcgcgctggagcggagcttcgagacgg 681 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | ||||||||||| |||||||| ||||| || | || ||||||||||| ||||| |||| Sbjct: 682 agaacaagctggagccggagcggaaggcgcggctggcgcgcgacctcgggctgcagccgc 741 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 742 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 801 Query: 428 gcgact 433 |||||| Sbjct: 802 gcgact 807
>gb|BT018458.1| Zea mays clone EL01N0412H10.d mRNA sequence Length = 1209 Score = 208 bits (105), Expect = 1e-50 Identities = 140/152 (92%) Strand = Plus / Plus Query: 271 gagcaggtgcgcgcgctggagcgcagcttcgaggcggacaacaagctggacccggagcgc 330 ||||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||| Sbjct: 454 gagcaggtgcgcgcgctggagcggagcttcgaggtggagaacaagctggagccggagcgc 513 Query: 331 aaggcccgcatcgcccgcgacctcggcctgcacccgcgccaggtcgccgtctggttccag 390 ||||| || | || ||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct: 514 aaggcgcggctggcgcgcgacctcngcctgcagccgcgccaggtcgccgtctggttccag 573 Query: 391 aaccgccgcgcccgctggaagacaaagcagct 422 ||||||||||||||||||||||| |||||||| Sbjct: 574 aaccgccgcgcccgctggaagaccaagcagct 605
>ref|XM_506668.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1595_D08.21 mRNA Length = 1473 Score = 202 bits (102), Expect = 8e-49 Identities = 167/186 (89%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||| || Sbjct: 478 gaagaagcggcggctgagcg-tggagcaggttcgcgcgctggagcggagcttcgaggtgg 536 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | |||||||| || || ||||| ||||| || | || ||||||||||||||||| |||| Sbjct: 537 agaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgc 596 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 597 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 656 Query: 428 gcgact 433 |||||| Sbjct: 657 gcgact 662
>ref|XM_450967.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1463 Score = 202 bits (102), Expect = 8e-49 Identities = 167/186 (89%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||| || Sbjct: 482 gaagaagcggcggctgagcg-tggagcaggttcgcgcgctggagcggagcttcgaggtgg 540 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | |||||||| || || ||||| ||||| || | || ||||||||||||||||| |||| Sbjct: 541 agaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgc 600 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 601 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 660 Query: 428 gcgact 433 |||||| Sbjct: 661 gcgact 666
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 202 bits (102), Expect = 8e-49 Identities = 167/186 (89%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||| || Sbjct: 17849111 gaagaagcggcggctgagcg-tggagcaggttcgcgcgctggagcggagcttcgaggtgg 17849169 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | |||||||| || || ||||| ||||| || | || ||||||||||||||||| |||| Sbjct: 17849170 agaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgc 17849229 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 17849230 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 17849289 Query: 428 gcgact 433 |||||| Sbjct: 17849290 gcgact 17849295 Score = 79.8 bits (40), Expect = 8e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 352 ctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaag 411 ||||||||||| || |||||||||||| |||||||||||||| ||||| || |||||| Sbjct: 20370861 ctcggcctgcagcctcgccaggtcgccatctggttccagaacaagcgcgcgcggtggaag 20370920 Query: 412 acaaagcagctcgagcgcga 431 | ||||||||||||||||| Sbjct: 20370921 tccaagcagctcgagcgcga 20370940 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 364 ccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctc 423 ||||| ||||| ||||| |||||||||||||||||||| | |||||||| ||||||||| Sbjct: 12728969 ccgcggcaggtggccgtgtggttccagaaccgccgcgcgaggtggaagacgaagcagctc 12728910 Query: 424 gagcgcgacttc 435 |||| ||||||| Sbjct: 12728909 gagctcgacttc 12728898 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 252 gaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgagg 304 ||||||||||||| | |||||||||||| ||||||||||| |||||||||| Sbjct: 12729084 gaagcggcggctgacagcggagcaggtgcgagcgctggagcggagcttcgagg 12729032 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 364 ccgcgccaggtcgccgtctggttccagaaccgccgcgcc 402 ||||||||||| | || ||||||||||||||||||||| Sbjct: 16620726 ccgcgccaggtggaggtgtggttccagaaccgccgcgcc 16620688 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 tggacccggagcgcaaggcc 336 |||||||||||||||||||| Sbjct: 15814758 tggacccggagcgcaaggcc 15814739
>dbj|AP005574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1595_D08 Length = 116351 Score = 202 bits (102), Expect = 8e-49 Identities = 167/186 (89%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||| || Sbjct: 89755 gaagaagcggcggctgagcg-tggagcaggttcgcgcgctggagcggagcttcgaggtgg 89813 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | |||||||| || || ||||| ||||| || | || ||||||||||||||||| |||| Sbjct: 89814 agaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgc 89873 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 89874 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 89933 Query: 428 gcgact 433 |||||| Sbjct: 89934 gcgact 89939
>gb|AF145728.1|AF145728 Oryza sativa homeodomain leucine zipper protein (Oshox4) mRNA, complete cds Length = 1423 Score = 202 bits (102), Expect = 8e-49 Identities = 167/186 (89%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||| || Sbjct: 448 gaagaagcggcggctgagcg-tggagcaggttcgcgcgctggagcggagcttcgaggtgg 506 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | |||||||| || || ||||| ||||| || | || ||||||||||||||||| |||| Sbjct: 507 agaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgc 566 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 567 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 626 Query: 428 gcgact 433 |||||| Sbjct: 627 gcgact 632
>dbj|AK099710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077J22, full insert sequence Length = 1463 Score = 202 bits (102), Expect = 8e-49 Identities = 167/186 (89%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||| || Sbjct: 482 gaagaagcggcggctgagcg-tggagcaggttcgcgcgctggagcggagcttcgaggtgg 540 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | |||||||| || || ||||| ||||| || | || ||||||||||||||||| |||| Sbjct: 541 agaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgc 600 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 601 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 660 Query: 428 gcgact 433 |||||| Sbjct: 661 gcgact 666
>dbj|AK105484.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B05, full insert sequence Length = 1473 Score = 202 bits (102), Expect = 8e-49 Identities = 167/186 (89%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 249 gaagaagcggcggctg-gcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgg 307 |||||||||||||||| ||| |||||||||| |||||||||||||| |||||||||| || Sbjct: 478 gaagaagcggcggctgagcg-tggagcaggttcgcgcgctggagcggagcttcgaggtgg 536 Query: 308 acaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgc 367 | |||||||| || || ||||| ||||| || | || ||||||||||||||||| |||| Sbjct: 537 agaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgc 596 Query: 368 gccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagc 427 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 597 gccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagc 656 Query: 428 gcgact 433 |||||| Sbjct: 657 gcgact 662
>ref|XM_482406.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1837 Score = 157 bits (79), Expect = 4e-35 Identities = 160/187 (85%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||| Sbjct: 749 gaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagcttcgaggagga 808 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||| |||||||| ||| | |||||||| ||||||| || ||| || Sbjct: 809 gaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcatggccccccg 868 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 869 gcaggtcgccgtctggttccagaaccgccgcgcccgctggaagaccaagcagctcgagca 928 Query: 429 cgacttc 435 ||||||| Sbjct: 929 cgacttc 935
>ref|XM_507232.1| PREDICTED Oryza sativa (japonica cultivar-group), P0433E10.14 mRNA Length = 1855 Score = 157 bits (79), Expect = 4e-35 Identities = 160/187 (85%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||| Sbjct: 748 gaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagcttcgaggagga 807 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||| |||||||| ||| | |||||||| ||||||| || ||| || Sbjct: 808 gaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcatggccccccg 867 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 868 gcaggtcgccgtctggttccagaaccgccgcgcccgctggaagaccaagcagctcgagca 927 Query: 429 cgacttc 435 ||||||| Sbjct: 928 cgacttc 934
>dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0433E10 Length = 144643 Score = 157 bits (79), Expect = 4e-35 Identities = 160/187 (85%) Strand = Plus / Minus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||| Sbjct: 48478 gaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagcttcgaggagga 48419 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||| |||||||| ||| | |||||||| ||||||| || ||| || Sbjct: 48418 gaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcatggccccccg 48359 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 48358 gcaggtcgccgtctggttccagaaccgccgcgcccgctggaagaccaagcagctcgagca 48299 Query: 429 cgacttc 435 ||||||| Sbjct: 48298 cgacttc 48292
>gb|AF145729.1|AF145729 Oryza sativa homeodomain leucine zipper protein (Oshox5) mRNA, complete cds Length = 1538 Score = 157 bits (79), Expect = 4e-35 Identities = 160/187 (85%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||| Sbjct: 465 gaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagcttcgaggagga 524 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||| |||||||| ||| | |||||||| ||||||| || ||| || Sbjct: 525 gaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcatggccccccg 584 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 585 gcaggtcgccgtctggttccagaaccgccgcgcccgctggaagaccaagcagctcgagca 644 Query: 429 cgacttc 435 ||||||| Sbjct: 645 cgacttc 651
>dbj|AK110561.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C12, full insert sequence Length = 1269 Score = 157 bits (79), Expect = 4e-35 Identities = 160/187 (85%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||| Sbjct: 358 gaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagcttcgaggagga 417 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||| |||||||| ||| | |||||||| ||||||| || ||| || Sbjct: 418 gaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcatggccccccg 477 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 478 gcaggtcgccgtctggttccagaaccgccgcgcccgctggaagaccaagcagctcgagca 537 Query: 429 cgacttc 435 ||||||| Sbjct: 538 cgacttc 544
>dbj|AK101569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050G15, full insert sequence Length = 1836 Score = 157 bits (79), Expect = 4e-35 Identities = 160/187 (85%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||| Sbjct: 748 gaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagcttcgaggagga 807 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||| |||||||| ||| | |||||||| ||||||| || ||| || Sbjct: 808 gaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcatggccccccg 867 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 868 gcaggtcgccgtctggttccagaaccgccgcgcccgctggaagaccaagcagctcgagca 927 Query: 429 cgacttc 435 ||||||| Sbjct: 928 cgacttc 934
>dbj|AK100634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110A12, full insert sequence Length = 1854 Score = 157 bits (79), Expect = 4e-35 Identities = 160/187 (85%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||| Sbjct: 747 gaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagcttcgaggagga 806 Query: 309 caacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcacccgcg 368 ||||||||||| |||||||| ||| | |||||||| ||||||| || ||| || Sbjct: 807 gaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcatggccccccg 866 Query: 369 ccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 867 gcaggtcgccgtctggttccagaaccgccgcgcccgctggaagaccaagcagctcgagca 926 Query: 429 cgacttc 435 ||||||| Sbjct: 927 cgacttc 933
>dbj|AP005555.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1118_B06 Length = 106678 Score = 143 bits (72), Expect = 7e-31 Identities = 84/88 (95%) Strand = Plus / Plus Query: 346 cgcgacctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgc 405 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 27 cgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcgg 86 Query: 406 tggaagacaaagcagctcgagcgcgact 433 |||||||| ||||||||||||||||||| Sbjct: 87 tggaagaccaagcagctcgagcgcgact 114
>gb|AY105265.1| Zea mays PCO062717 mRNA sequence Length = 2229 Score = 133 bits (67), Expect = 6e-28 Identities = 130/151 (86%) Strand = Plus / Plus Query: 285 gctggagcgcagcttcgaggcggacaacaagctggacccggagcgcaaggcccgcatcgc 344 ||||||| | |||||||||| ||| ||||||||||| |||||||||||| | | || Sbjct: 973 gctggagaggagcttcgaggaggagaacaagctggagccggagcgcaagacggagctggc 1032 Query: 345 ccgcgacctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccg 404 ||| | || |||||||| || |||||||| ||||||||||||||||||||||||||||| Sbjct: 1033 gcgcaagctgggcctgcagcctcgccaggtggccgtctggttccagaaccgccgcgcccg 1092 Query: 405 ctggaagacaaagcagctcgagcgcgacttc 435 |||||||| ||||||||||||||||||||| Sbjct: 1093 gtggaagaccaagcagctcgagcgcgacttc 1123
>gb|DQ353856.1| Triticum aestivum homeodomain-leucine zipper transcription factor TaHDZipI-2 mRNA, complete cds Length = 1126 Score = 117 bits (59), Expect = 4e-23 Identities = 149/179 (83%) Strand = Plus / Plus Query: 244 ggcgggaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgag 303 |||| |||||||||||||||| ||||||||||||| |||||||| | ||||||| Sbjct: 357 ggcgagaagaagcggcggctgaacgtggagcaggtgcggacgctggagaagaacttcgag 416 Query: 304 gcggacaacaagctggacccggagcgcaaggcccgcatcgcccgcgacctcggcctgcac 363 | || |||||||||||| |||||||||||| | | ||||||| || || ||||| Sbjct: 417 gtggccaacaagctggagccggagcgcaagatgcagctggcccgcgcgctggggctgcag 476 Query: 364 ccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagct 422 ||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 477 ccgcggcaggtggccatctggttccagaaccgccgcgcccggtggaagacaaagcagct 535
>ref|XM_467603.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1363 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 358 ctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaag 417 ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 382 ctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgcgcgctggaagaccaag 441 Query: 418 cagctcgagcgcgacttc 435 |||||||||||||||||| Sbjct: 442 cagctcgagcgcgacttc 459 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||| || ||| ||||||||||| ||||||| | |||||||||| ||| Sbjct: 273 gaagaagcggcgcctcacgccggagcaggtgcatctgctggagaggagcttcgaggagga 332 Query: 309 caacaagctggacccggagcg 329 ||||||||||| |||||||| Sbjct: 333 gaacaagctggagccggagcg 353
>ref|XM_506952.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0072H09.24 mRNA Length = 1710 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 358 ctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaag 417 ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 879 ctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgcgcgctggaagaccaag 938 Query: 418 cagctcgagcgcgacttc 435 |||||||||||||||||| Sbjct: 939 cagctcgagcgcgacttc 956 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||| || ||| ||||||||||| ||||||| | |||||||||| ||| Sbjct: 770 gaagaagcggcgcctcacgccggagcaggtgcatctgctggagaggagcttcgaggagga 829 Query: 309 caacaagctggacccggagcg 329 ||||||||||| |||||||| Sbjct: 830 gaacaagctggagccggagcg 850
>gb|AY554029.1| Oryza sativa (japonica cultivar-group) clone R4057 Hox16 (hox16) mRNA, complete cds Length = 1199 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 358 ctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaag 417 ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 233 ctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgcgcgctggaagaccaag 292 Query: 418 cagctcgagcgcgacttc 435 |||||||||||||||||| Sbjct: 293 cagctcgagcgcgacttc 310 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||| || ||| ||||||||||| ||||||| | |||||||||| ||| Sbjct: 124 gaagaagcggcgcctcacgccggagcaggtgcatctgctggagaggagcttcgaggagga 183 Query: 309 caacaagctggacccggagcg 329 ||||||||||| |||||||| Sbjct: 184 gaacaagctggagccggagcg 204
>gb|AY559045.1| Oryza sativa homeodomain leucine zipper protein 16 (hox16) mRNA, complete cds Length = 1472 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 358 ctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaag 417 ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 468 ctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgcgcgctggaagaccaag 527 Query: 418 cagctcgagcgcgacttc 435 |||||||||||||||||| Sbjct: 528 cagctcgagcgcgacttc 545 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||| || ||| ||||||||||| ||||||| | |||||||||| ||| Sbjct: 359 gaagaagcggcgcctcacgccggagcaggtgcatctgctggagaggagcttcgaggagga 418 Query: 309 caacaagctggacccggagcg 329 ||||||||||| |||||||| Sbjct: 419 gaacaagctggagccggagcg 439
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 358 ctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaag 417 ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 30400886 ctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgcgcgctggaagaccaag 30400945 Query: 418 cagctcgagcgcgacttc 435 |||||||||||||||||| Sbjct: 30400946 cagctcgagcgcgacttc 30400963 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 352 ctcggcctgcacccgcgccaggtcgccgtctggttccagaac 393 ||||| ||||| ||||||||||| ||| |||||||||||||| Sbjct: 26162198 ctcgggctgcagccgcgccaggtggccatctggttccagaac 26162239 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 285 gctggagcgcagcttcgaggcggacaacaagctggacccggagcg 329 ||||||| | |||||||||| ||| ||||||||||| |||||||| Sbjct: 30400813 gctggagaggagcttcgaggaggagaacaagctggagccggagcg 30400857
>gb|AF264731.1|AF264731 Oryza sativa microsatellite 25CAC sequence Length = 1201 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 358 ctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaag 417 ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 268 ctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgcgcgctggaagaccaag 327 Query: 418 cagctcgagcgcgacttc 435 |||||||||||||||||| Sbjct: 328 cagctcgagcgcgacttc 345
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 358 ctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaag 417 ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 81746 ctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgcgcgctggaagaccaag 81805 Query: 418 cagctcgagcgcgacttc 435 |||||||||||||||||| Sbjct: 81806 cagctcgagcgcgacttc 81823 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 285 gctggagcgcagcttcgaggcggacaacaagctggacccggagcg 329 ||||||| | |||||||||| ||| ||||||||||| |||||||| Sbjct: 81673 gctggagaggagcttcgaggaggagaacaagctggagccggagcg 81717
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0617A09 Length = 134804 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 358 ctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaag 417 ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 6934 ctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgcgcgctggaagaccaag 6993 Query: 418 cagctcgagcgcgacttc 435 |||||||||||||||||| Sbjct: 6994 cagctcgagcgcgacttc 7011 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 285 gctggagcgcagcttcgaggcggacaacaagctggacccggagcg 329 ||||||| | |||||||||| ||| ||||||||||| |||||||| Sbjct: 6861 gctggagaggagcttcgaggaggagaacaagctggagccggagcg 6905
>dbj|AK119592.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D05, full insert sequence Length = 1710 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 358 ctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaag 417 ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 879 ctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgcgcgctggaagaccaag 938 Query: 418 cagctcgagcgcgacttc 435 |||||||||||||||||| Sbjct: 939 cagctcgagcgcgacttc 956 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||| || ||| ||||||||||| ||||||| | |||||||||| ||| Sbjct: 770 gaagaagcggcgcctcacgccggagcaggtgcatctgctggagaggagcttcgaggagga 829 Query: 309 caacaagctggacccggagcg 329 ||||||||||| |||||||| Sbjct: 830 gaacaagctggagccggagcg 850
>dbj|AK058364.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-F09, full insert sequence Length = 1363 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 358 ctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaag 417 ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 382 ctgcagccgcggcaggtcgccgtgtggttccagaaccgccgcgcgcgctggaagaccaag 441 Query: 418 cagctcgagcgcgacttc 435 |||||||||||||||||| Sbjct: 442 cagctcgagcgcgacttc 459 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 249 gaagaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgaggcgga 308 |||||||||||| || ||| ||||||||||| ||||||| | |||||||||| ||| Sbjct: 273 gaagaagcggcgcctcacgccggagcaggtgcatctgctggagaggagcttcgaggagga 332 Query: 309 caacaagctggacccggagcg 329 ||||||||||| |||||||| Sbjct: 333 gaacaagctggagccggagcg 353
>ref|NM_196409.1| Oryza sativa (japonica cultivar-group) putative homeotic protein (OSJNBb0044I14.6), mRNA Length = 1056 Score = 97.6 bits (49), Expect = 3e-17 Identities = 145/177 (81%) Strand = Plus / Plus Query: 269 tggagcaggtgcgcgcgctggagcgcagcttcgaggcggacaacaagctggacccggagc 328 ||||||||||| | |||||||||| ||||||||| | | ||||||||||| ||||||| Sbjct: 329 tggagcaggtgaggacgctggagcggagcttcgagtccgggaacaagctggagccggagc 388 Query: 329 gcaaggcccgcatcgcccgcgacctcggcctgcacccgcgccaggtcgccgtctggttcc 388 | ||||| | | || |||| || || ||||| ||||| ||||| ||| ||||||||| Sbjct: 389 ggaaggcgcagctggcgcgcgcgctggggctgcagccgcggcaggtggccatctggttcc 448 Query: 389 agaaccgccgcgcccgctggaagacaaagcagctcgagcgcgacttcaacgccctcc 445 ||||||||||||| | |||||||| |||||||||||| |||||| ||||||||| Sbjct: 449 agaaccgccgcgcgaggtggaagacgaagcagctcgagaaggacttcgacgccctcc 505
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0044A10, from chromosome 10, complete sequence Length = 173374 Score = 97.6 bits (49), Expect = 3e-17 Identities = 145/177 (81%) Strand = Plus / Plus Query: 269 tggagcaggtgcgcgcgctggagcgcagcttcgaggcggacaacaagctggacccggagc 328 ||||||||||| | |||||||||| ||||||||| | | ||||||||||| ||||||| Sbjct: 136218 tggagcaggtgaggacgctggagcggagcttcgagtccgggaacaagctggagccggagc 136277 Query: 329 gcaaggcccgcatcgcccgcgacctcggcctgcacccgcgccaggtcgccgtctggttcc 388 | ||||| | | || |||| || || ||||| ||||| ||||| ||| ||||||||| Sbjct: 136278 ggaaggcgcagctggcgcgcgcgctggggctgcagccgcggcaggtggccatctggttcc 136337 Query: 389 agaaccgccgcgcccgctggaagacaaagcagctcgagcgcgacttcaacgccctcc 445 ||||||||||||| | |||||||| |||||||||||| |||||| ||||||||| Sbjct: 136338 agaaccgccgcgcgaggtggaagacgaagcagctcgagaaggacttcgacgccctcc 136394
>gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0044I14, from Chromosome 10, complete sequence Length = 63167 Score = 97.6 bits (49), Expect = 3e-17 Identities = 145/177 (81%) Strand = Plus / Minus Query: 269 tggagcaggtgcgcgcgctggagcgcagcttcgaggcggacaacaagctggacccggagc 328 ||||||||||| | |||||||||| ||||||||| | | ||||||||||| ||||||| Sbjct: 40324 tggagcaggtgaggacgctggagcggagcttcgagtccgggaacaagctggagccggagc 40265 Query: 329 gcaaggcccgcatcgcccgcgacctcggcctgcacccgcgccaggtcgccgtctggttcc 388 | ||||| | | || |||| || || ||||| ||||| ||||| ||| ||||||||| Sbjct: 40264 ggaaggcgcagctggcgcgcgcgctggggctgcagccgcggcaggtggccatctggttcc 40205 Query: 389 agaaccgccgcgcccgctggaagacaaagcagctcgagcgcgacttcaacgccctcc 445 ||||||||||||| | |||||||| |||||||||||| |||||| ||||||||| Sbjct: 40204 agaaccgccgcgcgaggtggaagacgaagcagctcgagaaggacttcgacgccctcc 40148
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 79.8 bits (40), Expect = 8e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 352 ctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaag 411 ||||||||||| || |||||||||||| |||||||||||||| ||||| || |||||| Sbjct: 149988 ctcggcctgcagcctcgccaggtcgccatctggttccagaacaagcgcgcgcggtggaag 150047 Query: 412 acaaagcagctcgagcgcga 431 | ||||||||||||||||| Sbjct: 150048 tccaagcagctcgagcgcga 150067
>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0027G10 Length = 184759 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 364 ccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctc 423 ||||| ||||| ||||| |||||||||||||||||||| | |||||||| ||||||||| Sbjct: 36746 ccgcggcaggtggccgtgtggttccagaaccgccgcgcgaggtggaagacgaagcagctc 36687 Query: 424 gagcgcgacttc 435 |||| ||||||| Sbjct: 36686 gagctcgacttc 36675 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 252 gaagcggcggctggcgctggagcaggtgcgcgcgctggagcgcagcttcgagg 304 ||||||||||||| | |||||||||||| ||||||||||| |||||||||| Sbjct: 36861 gaagcggcggctgacagcggagcaggtgcgagcgctggagcggagcttcgagg 36809
>gb|AF145730.1|AF145730 Oryza sativa homeodomain leucine zipper protein (Oshox6) mRNA, partial cds Length = 1057 Score = 79.8 bits (40), Expect = 8e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 352 ctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaag 411 ||||||||||| || |||||||||||| |||||||||||||| ||||| || |||||| Sbjct: 258 ctcggcctgcagcctcgccaggtcgccatctggttccagaacaagcgcgcgcggtggaag 317 Query: 412 acaaagcagctcgagcgcga 431 | ||||||||||||||||| Sbjct: 318 tccaagcagctcgagcgcga 337
>dbj|AK103160.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121C04, full insert sequence Length = 1182 Score = 79.8 bits (40), Expect = 8e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 352 ctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaag 411 ||||||||||| || |||||||||||| |||||||||||||| ||||| || |||||| Sbjct: 263 ctcggcctgcagcctcgccaggtcgccatctggttccagaacaagcgcgcgcggtggaag 322 Query: 412 acaaagcagctcgagcgcga 431 | ||||||||||||||||| Sbjct: 323 tccaagcagctcgagcgcga 342
>dbj|AK059755.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C03, full insert sequence Length = 1151 Score = 79.8 bits (40), Expect = 8e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 352 ctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaag 411 ||||||||||| || |||||||||||| |||||||||||||| ||||| || |||||| Sbjct: 219 ctcggcctgcagcctcgccaggtcgccatctggttccagaacaagcgcgcgcggtggaag 278 Query: 412 acaaagcagctcgagcgcga 431 | ||||||||||||||||| Sbjct: 279 tccaagcagctcgagcgcga 298
>ref|XM_470308.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1571 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 341 tcgcccgcgacctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcg 400 ||||||||| ||||| ||||| ||||| ||||| ||| ||||||||||||||||||||| Sbjct: 479 tcgcccgcgcgctcgggctgcagccgcgtcaggtggccatctggttccagaaccgccgcg 538 Query: 401 cccgctggaagacaaagcagct 422 | | |||||||| |||||||| Sbjct: 539 cgaggtggaagacgaagcagct 560
>gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence Length = 160738 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 341 tcgcccgcgacctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcg 400 ||||||||| ||||| ||||| ||||| ||||| ||| ||||||||||||||||||||| Sbjct: 13309 tcgcccgcgcgctcgggctgcagccgcgtcaggtggccatctggttccagaaccgccgcg 13368 Query: 401 cccgctggaagacaaagcagct 422 | | |||||||| |||||||| Sbjct: 13369 cgaggtggaagacgaagcagct 13390
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence Length = 132151 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 341 tcgcccgcgacctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcg 400 ||||||||| ||||| ||||| ||||| ||||| ||| ||||||||||||||||||||| Sbjct: 46692 tcgcccgcgcgctcgggctgcagccgcgtcaggtggccatctggttccagaaccgccgcg 46633 Query: 401 cccgctggaagacaaagcagct 422 | | |||||||| |||||||| Sbjct: 46632 cgaggtggaagacgaagcagct 46611
>gb|AY554034.1| Oryza sativa (indica cultivar-group) clone OG05G01 Hox12 (hox12) mRNA, partial cds Length = 1002 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Plus Query: 370 caggtcgccgtctggttccagaaccgccgcgcccgc 405 |||||||||||||||||||||||||||||||||||| Sbjct: 257 caggtcgccgtctggttccagaaccgccgcgcccgc 292
>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence Length = 155037 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Plus Query: 370 caggtcgccgtctggttccagaaccgccgcgcccgc 405 |||||||||||||||||||||||||||||||||||| Sbjct: 19869 caggtcgccgtctggttccagaaccgccgcgcccgc 19904
>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence Length = 181163 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Plus Query: 370 caggtcgccgtctggttccagaaccgccgcgcccgc 405 |||||||||||||||||||||||||||||||||||| Sbjct: 106682 caggtcgccgtctggttccagaaccgccgcgcccgc 106717
>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence Length = 117931 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 355 ggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagaca 414 |||||||| ||||| ||||| ||| |||||||||||||||| ||||| || |||||||| Sbjct: 20059 ggcctgcagccgcggcaggtggccatctggttccagaaccggcgcgcgcggtggaagacg 20118 Query: 415 aagcagct 422 |||||||| Sbjct: 20119 aagcagct 20126
>dbj|AK073446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043C24, full insert sequence Length = 1170 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Plus Query: 370 caggtcgccgtctggttccagaaccgccgcgcccgc 405 |||||||||||||||||||||||||||||||||||| Sbjct: 513 caggtcgccgtctggttccagaaccgccgcgcccgc 548
>gb|AY104388.1| Zea mays PCO136074 mRNA sequence Length = 1227 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 367 cgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgag 426 |||||||| || || |||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 1109 cgccaggtagctgtttggttccagaaccgccgcgcgcgctggaagaccaagcaactcgag 1168 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Plus Query: 285 gctggagcgcagcttcgaggcggacaacaagctggacccggagcgcaag 333 ||||||||| |||||||| | || ||||||||||| |||||||||||| Sbjct: 1027 gctggagcggagcttcgaagaagagaacaagctggagccggagcgcaag 1075
>dbj|AB028073.1| Physcomitrella patens mRNA for homeobox protein PpHB2, partial cds Length = 1593 Score = 69.9 bits (35), Expect = 8e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcg 428 |||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct: 531 tggttccagaaccgtcgcgcgcgatggaagacaaagcagctcgagcg 577
>ref|XM_478887.1| Oryza sativa (japonica cultivar-group), mRNA Length = 723 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 370 caggtcgccgtctggttccagaaccgccgcgcccgc 405 ||||| |||||||||||||||||||||||||||||| Sbjct: 304 caggtggccgtctggttccagaaccgccgcgcccgc 339
>gb|AY559047.1| Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 14 (hox14) mRNA, complete cds Length = 1173 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 370 caggtcgccgtctggttccagaaccgccgcgcccgc 405 ||||| |||||||||||||||||||||||||||||| Sbjct: 509 caggtggccgtctggttccagaaccgccgcgcccgc 544
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 370 caggtcgccgtctggttccagaaccgccgcgcccgc 405 ||||| |||||||||||||||||||||||||||||| Sbjct: 23506568 caggtggccgtctggttccagaaccgccgcgcccgc 23506603
>dbj|AP004185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1301_C12 Length = 128396 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 370 caggtcgccgtctggttccagaaccgccgcgcccgc 405 ||||| |||||||||||||||||||||||||||||| Sbjct: 66961 caggtggccgtctggttccagaaccgccgcgcccgc 66996
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 370 caggtcgccgtctggttccagaaccgccgcgcccgc 405 ||||| |||||||||||||||||||||||||||||| Sbjct: 126465 caggtggccgtctggttccagaaccgccgcgcccgc 126500
>dbj|AK121889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105B17, full insert sequence Length = 1130 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 370 caggtcgccgtctggttccagaaccgccgcgcccgc 405 ||||| |||||||||||||||||||||||||||||| Sbjct: 502 caggtggccgtctggttccagaaccgccgcgcccgc 537
>dbj|AB028076.1| Physcomitrella patens mRNA for homeobox protein PpHB5, complete cds Length = 1650 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcgcgact 433 ||||||| |||||||| ||||| |||||||||||||| ||| | |||||||||| Sbjct: 790 tctggtttcagaaccgacgcgcgcgctggaagacaaaacagttggagcgcgact 843
>gb|BT014213.1| Lycopersicon esculentum clone 133390F, mRNA sequence Length = 1472 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcccgctggaagacaaagcagctcgag 426 |||||||| |||||||| ||||| |||||||| |||||||||||| Sbjct: 787 tggttccaaaaccgccgtgcccggtggaagaccaagcagctcgag 831
>gb|AY823671.1| Glycine max HDZip I protein mRNA, complete cds Length = 1747 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcccgctggaagacaaagcag 420 ||||| |||||||||||||| ||||||||||| |||||| Sbjct: 915 tggtttcagaaccgccgcgcgcgctggaagaccaagcag 953
>ref|XM_467056.1| Oryza sativa (japonica cultivar-group), mRNA Length = 918 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 352 ctcggcctgcacccgcgccaggtcgccgtctggttccagaac 393 ||||| ||||| ||||||||||| ||| |||||||||||||| Sbjct: 387 ctcgggctgcagccgcgccaggtggccatctggttccagaac 428
>dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0048B08 Length = 146874 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 352 ctcggcctgcacccgcgccaggtcgccgtctggttccagaac 393 ||||| ||||| ||||||||||| ||| |||||||||||||| Sbjct: 59025 ctcgggctgcagccgcgccaggtggccatctggttccagaac 59066
>dbj|AK063685.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-F01, full insert sequence Length = 918 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 352 ctcggcctgcacccgcgccaggtcgccgtctggttccagaac 393 ||||| ||||| ||||||||||| ||| |||||||||||||| Sbjct: 387 ctcgggctgcagccgcgccaggtggccatctggttccagaac 428
>dbj|AB028079.1| Physcomitrella patens mRNA for homeobox protein Pphb8, complete cds Length = 1481 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 374 tcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagctcgagcgcgact 433 |||| ||||||||||||||| | || || |||||||| || || ||||| |||||||||| Sbjct: 504 tcgcggtctggttccagaacagacgtgcacgctggaaaacgaaacagctggagcgcgact 563 Query: 434 tc 435 || Sbjct: 564 tc 565
>gb|AY336103.1| Brassica napus homeodomain-leucine zipper protein mRNA, complete cds Length = 1572 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcccgctggaagacaaagcagctcgag 426 ||||| ||||||||||| || || ||||||||||| ||||||||| Sbjct: 522 tggtttcagaaccgccgtgcgcggtggaagacaaaacagctcgag 566
>gb|AF268422.1|AF268422 Brassica rapa subsp. pekinensis hb-6-like protein mRNA, complete cds Length = 1333 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcccgctggaagacaaagcagctcgag 426 ||||| ||||||||||| || || ||||||||||| ||||||||| Sbjct: 454 tggtttcagaaccgccgtgcgcggtggaagacaaaacagctcgag 498
>ref|NM_125929.2| Arabidopsis thaliana ATHB5; transcription factor AT5G65310 (ATHB5) transcript variant AT5G65310.1 mRNA, complete cds Length = 1833 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 367 cgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagct 422 ||||| ||||| ||||||| || |||||||| || || ||||||||||||||||| Sbjct: 728 cgccaagtcgcgatctggtttcaaaaccgccgtgctcggtggaagacaaagcagct 783
>ref|NM_001037074.1| Arabidopsis thaliana ATHB5 AT5G65310 (ATHB5) transcript variant AT5G65310.2 mRNA, complete cds Length = 1460 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 367 cgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagct 422 ||||| ||||| ||||||| || |||||||| || || ||||||||||||||||| Sbjct: 334 cgccaagtcgcgatctggtttcaaaaccgccgtgctcggtggaagacaaagcagct 389
>ref|NM_127411.1| Arabidopsis thaliana HB-2; DNA binding / transcription factor AT2G18550 (HB-2) mRNA, complete cds Length = 663 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 373 gtcgccgtctggttccagaaccgccgcgcccgctggaaga 412 ||||||||||||||||| |||||||| || || ||||||| Sbjct: 304 gtcgccgtctggttccaaaaccgccgtgcacggtggaaga 343
>ref|XM_473365.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 690 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Plus Query: 346 cgcgacctcggcctgcacccgcgccaggtcgccgtctggttccagaac 393 ||||| || |||||||| ||||| ||||| ||| |||||||||||||| Sbjct: 175 cgcgagctgggcctgcagccgcggcaggtggccatctggttccagaac 222
>gb|AC158179.2| Selaginella moellendorffii clone JGIASXY-5A11, complete sequence Length = 40733 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 306 ggacaacaagctggacccggagcgcaag 333 ||||||||||||||| |||||||||||| Sbjct: 32740 ggacaacaagctggagccggagcgcaag 32767
>emb|AJ748731.1| Zea mays OCL1 gene for homeobox protein OCL1, exons 1-9 Length = 9947 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Plus Query: 352 ctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgc 399 |||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 4021 ctcggcctcgacccgcgccaggtcaagttctggttccagaaccgccgc 4068
>emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein Length = 3092 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Plus Query: 352 ctcggcctgcacccgcgccaggtcgccgtctggttccagaaccgccgc 399 |||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 627 ctcggcctcgacccgcgccaggtcaagttctggttccagaaccgccgc 674
>gb|AY091340.1| Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (HD-zip protein ATHB-5) (At5g65310) mRNA, complete cds Length = 970 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 367 cgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagct 422 ||||| ||||| ||||||| || |||||||| || || ||||||||||||||||| Sbjct: 331 cgccaagtcgcgatctggtttcaaaaccgccgtgctcggtggaagacaaagcagct 386
>gb|AY074293.1| Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (At5g65310) mRNA, complete cds Length = 1851 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 367 cgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagct 422 ||||| ||||| ||||||| || |||||||| || || ||||||||||||||||| Sbjct: 728 cgccaagtcgcgatctggtttcaaaaccgccgtgctcggtggaagacaaagcagct 783
>emb|AJ004903.1|GGJ004903 Gallus gallus mRNA for CMIX homeobox gene, partial cds Length = 409 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgcgcc 402 |||||||||||||||||||||||| Sbjct: 147 gtctggttccagaaccgccgcgcc 170
>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence Length = 140449 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Plus Query: 346 cgcgacctcggcctgcacccgcgccaggtcgccgtctggttccagaac 393 ||||| || |||||||| ||||| ||||| ||| |||||||||||||| Sbjct: 40558 cgcgagctgggcctgcagccgcggcaggtggccatctggttccagaac 40605
>gb|AC006135.3| Arabidopsis thaliana chromosome 2 clone F24H14 map CIC06E08, complete sequence Length = 82356 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 373 gtcgccgtctggttccagaaccgccgcgcccgctggaaga 412 ||||||||||||||||| |||||||| || || ||||||| Sbjct: 35773 gtcgccgtctggttccaaaaccgccgtgcacggtggaaga 35812
>gb|AY224440.1| Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds Length = 837 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Plus Query: 346 cgcgacctcggcctgcacccgcgccaggtcgccgtctggttccagaac 393 ||||| || |||||||| ||||| ||||| ||| |||||||||||||| Sbjct: 322 cgcgagctgggcctgcagccgcggcaggtggccatctggttccagaac 369
>gb|AF325054.2|AF325054 Arabidopsis thaliana AT5g65310 (AT5g65310/MNA5_4) mRNA, complete cds Length = 1680 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 367 cgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagct 422 ||||| ||||| ||||||| || |||||||| || || ||||||||||||||||| Sbjct: 716 cgccaagtcgcgatctggtttcaaaaccgccgtgctcggtggaagacaaagcagct 771
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Plus Query: 346 cgcgacctcggcctgcacccgcgccaggtcgccgtctggttccagaac 393 ||||| || |||||||| ||||| ||||| ||| |||||||||||||| Sbjct: 27097915 cgcgagctgggcctgcagccgcggcaggtggccatctggttccagaac 27097962 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 tcgcccgcgacctcggcctgcacc 364 ||||| |||||||||||||||||| Sbjct: 22152608 tcgccggcgacctcggcctgcacc 22152631
>emb|BX831827.1|CNS0A0YS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH31ZG07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1525 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 367 cgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagct 422 ||||| ||||| ||||||| || |||||||| || || ||||||||||||||||| Sbjct: 694 cgccaagtcgcgatctggtttcaaaaccgccgtgctcggtggaagacaaagcagct 749
>ref|NM_204990.1| Gallus gallus CMIX homeobox gene (CMIX), mRNA Length = 886 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgcgcc 402 |||||||||||||||||||||||| Sbjct: 311 gtctggttccagaaccgccgcgcc 334
>dbj|AB011479.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5 Length = 88356 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Minus Query: 367 cgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagct 422 ||||| ||||| ||||||| || |||||||| || || ||||||||||||||||| Sbjct: 15477 cgccaagtcgcgatctggtttcaaaaccgccgtgctcggtggaagacaaagcagct 15422
>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1144B06 Length = 133689 Score = 48.1 bits (24), Expect = 0.029 Identities = 33/36 (91%) Strand = Plus / Minus Query: 361 cacccgcgccaggtcgccgtctggttccagaaccgc 396 ||||| |||||||||||||| |||||| |||||||| Sbjct: 133654 caccctcgccaggtcgccgtttggttctagaaccgc 133619
>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0493A04 Length = 149367 Score = 48.1 bits (24), Expect = 0.029 Identities = 33/36 (91%) Strand = Plus / Minus Query: 361 cacccgcgccaggtcgccgtctggttccagaaccgc 396 ||||| |||||||||||||| |||||| |||||||| Sbjct: 31599 caccctcgccaggtcgccgtttggttctagaaccgc 31564
>emb|X67033.1|ATATHB5 A.thaliana mRNA Athb-5 Length = 1553 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 367 cgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagct 422 ||||| ||||| ||||||| || |||||||| || || ||||||||||||||||| Sbjct: 676 cgccaagtcgcgatctggtttcaaaaccgccgtgctcggtggaagacaaagcagct 731
>dbj|AK109177.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-H12, full insert sequence Length = 908 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Plus Query: 346 cgcgacctcggcctgcacccgcgccaggtcgccgtctggttccagaac 393 ||||| || |||||||| ||||| ||||| ||| |||||||||||||| Sbjct: 85 cgcgagctgggcctgcagccgcggcaggtggccatctggttccagaac 132
>gb|U34615.1|GGU34615 Gallus gallus homeobox protein CMIX mRNA, complete cds Length = 886 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgcgcc 402 |||||||||||||||||||||||| Sbjct: 311 gtctggttccagaaccgccgcgcc 334
>dbj|AP006364.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28B04, TM0170, complete sequence Length = 101172 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Minus Query: 367 cgccaggtcgccgtctggttccagaaccgccgcgcccgctggaagacaaagcagct 422 ||||| ||||| ||||||||||||||||||| || || |||||||| || ||||| Sbjct: 44592 cgccaagtcgcaatctggttccagaaccgccgtgcacggtggaagacgaaacagct 44537
>gb|AY554038.1| Oryza sativa (japonica cultivar-group) Hox11 (hox11) gene, exons 2, 3 and partial cds Length = 307 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 364 ccgcgccaggtcgccgtctggttccagaaccgccgcgcc 402 ||||||||||| | || ||||||||||||||||||||| Sbjct: 212 ccgcgccaggtggaggtgtggttccagaaccgccgcgcc 250
>gb|AY559046.1| Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 11 (hox11) mRNA, partial cds Length = 272 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 364 ccgcgccaggtcgccgtctggttccagaaccgccgcgcc 402 ||||||||||| | || ||||||||||||||||||||| Sbjct: 105 ccgcgccaggtggaggtgtggttccagaaccgccgcgcc 143
>ref|XM_545946.2| PREDICTED: Canis familiaris similar to Homeobox protein MSX-1 (Hox-7) (LOC488828), mRNA Length = 776 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 452 tctggttccagaaccgccgcgcc 474
>emb|X65791.1|GDHOX7GNA G.domseticus Hox-7 cDNA, 3' CDS Length = 861 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 234 tctggttccagaaccgccgcgcc 256
>emb|X61922.1|GGHOX7 G. gallus Hox-7 mRNA Length = 796 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 182 tctggttccagaaccgccgcgcc 204
>emb|X03062.1|DMCAD Drosophila caudal (cad) mRNA fragment with homeo-box-sequence from 38E region on left arm of chromosome 2 Length = 591 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 320 tctggttccagaaccgccgcgcc 342
>ref|NM_134301.3| Drosophila melanogaster caudal CG1759-RB, transcript variant B (cad), mRNA Length = 2227 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 1170 tctggttccagaaccgccgcgcc 1192
>ref|NM_057606.4| Drosophila melanogaster caudal CG1759-RA, transcript variant A (cad), mRNA Length = 2519 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 1329 tctggttccagaaccgccgcgcc 1351
>gb|AY069565.1| Drosophila melanogaster LD29596 full length cDNA Length = 2518 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 1307 tctggttccagaaccgccgcgcc 1329
>gb|DQ067481.1|DQ067480S2 Saguinus oedipus msh homeobox 1-like protein (MSX1) gene, exon 2 and complete cds Length = 1124 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 523 tctggttccagaaccgccgcgcc 545
>gb|DQ067479.1|DQ067478S2 Leontopithecus rosalia msh homeobox 1-like protein (MSX1) gene, exon 2 and complete cds Length = 930 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 554 tctggttccagaaccgccgcgcc 576
>gb|DQ067477.1|DQ067476S2 Callithrix jacchus msh homeobox 1-like protein (MSX1) gene, exon 2 and complete cds Length = 1097 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 531 tctggttccagaaccgccgcgcc 553
>gb|DQ067475.1|DQ067474S2 Callimico goeldii msh homeobox 1-like protein (MSX1) gene, exon 2 and complete cds Length = 1153 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 551 tctggttccagaaccgccgcgcc 573
>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone BACR07D17, complete sequence Length = 173422 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 51896 tctggttccagaaccgccgcgcc 51918
>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1596_C06 Length = 124721 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 364 ccgcgccaggtcgccgtctggttccagaaccgccgcgcc 402 ||||||||||| | || ||||||||||||||||||||| Sbjct: 28865 ccgcgccaggtggaggtgtggttccagaaccgccgcgcc 28827
>dbj|D82577.1|AMTMSX1P Ambystoma mexicanum mRNA for Msx1 protein, complete cds Length = 1601 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 581 tctggttccagaaccgccgcgcc 603
>gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77 of 83 of the complete sequence Length = 270158 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 41710 tctggttccagaaccgccgcgcc 41732
>ref|NM_205488.1| Gallus gallus msh homeobox homolog 1 (Drosophila) (MSX1), mRNA Length = 1310 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 698 tctggttccagaaccgccgcgcc 720
>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582 (D85)), complete sequence Length = 142799 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 37641 tctggttccagaaccgccgcgcc 37619
>gb|AY525844.1| Ambystoma mexicanum Msx1 protein (msx1) mRNA, complete cds Length = 920 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 679 tctggttccagaaccgccgcgcc 701
>gb|M76985.1|CHKHBOX7A Chicken homeobox (Hbox 7) mRNA, complete cds Length = 1259 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 679 tctggttccagaaccgccgcgcc 701
>gb|M21070.1|DROCADA2 D.melanogaster caudal gene (cad) encoding a maternal and zygotic transcript, exon 2 Length = 1430 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 209 tctggttccagaaccgccgcgcc 231
>dbj|D10372.1|CHKHOX7 Gallus gallus mRNA for Chox-7 protein, complete cds Length = 1310 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgcc 402 ||||||||||||||||||||||| Sbjct: 698 tctggttccagaaccgccgcgcc 720
>ref|XM_480923.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1247 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 381 ctggttccagaaccgccgcgcccgct 406 ||||||||||||||||||| |||||| Sbjct: 449 ctggttccagaaccgccgctcccgct 474
>ref|XM_582194.2| PREDICTED: Bos taurus similar to Homeobox protein Hox-C13 (Hox-3G), transcript variant 1 (LOC538716), mRNA Length = 1074 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 904 gcgccaggtcaccatctggttccagaaccg 933
>ref|XM_864857.1| PREDICTED: Bos taurus similar to Homeobox protein Hox-C13 (Hox-3G), transcript variant 2 (LOC538716), mRNA Length = 1004 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 834 gcgccaggtcaccatctggttccagaaccg 863
>gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete sequence Length = 378763 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 103971 gcgccaggtcaccatctggttccagaaccg 104000
>gb|AY266017.1| Ovis aries Hoxc13 (Hoxc13) mRNA, partial cds Length = 1567 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 169 gcgccaggtcaccatctggttccagaaccg 198
>gb|AF438315.1| Pleurodeles waltl transcription factor HoxC13 mRNA, complete cds Length = 1732 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 1019 gcgccaggtcaccatctggttccagaaccg 1048
>ref|XM_543629.2| PREDICTED: Canis familiaris homeobox C13, transcript variant 1 (HOXC13), mRNA Length = 1003 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 834 gcgccaggtcaccatctggttccagaaccg 863
>ref|XM_851714.1| PREDICTED: Canis familiaris homeobox C13, transcript variant 9 (HOXC13), mRNA Length = 978 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 888 gcgccaggtcaccatctggttccagaaccg 917
>ref|XM_851676.1| PREDICTED: Canis familiaris homeobox C13, transcript variant 8 (HOXC13), mRNA Length = 978 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 888 gcgccaggtcaccatctggttccagaaccg 917
>ref|XM_851632.1| PREDICTED: Canis familiaris homeobox C13, transcript variant 7 (HOXC13), mRNA Length = 978 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 888 gcgccaggtcaccatctggttccagaaccg 917
>ref|XM_851594.1| PREDICTED: Canis familiaris homeobox C13, transcript variant 6 (HOXC13), mRNA Length = 984 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 894 gcgccaggtcaccatctggttccagaaccg 923
>ref|XM_851554.1| PREDICTED: Canis familiaris homeobox C13, transcript variant 5 (HOXC13), mRNA Length = 981 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 891 gcgccaggtcaccatctggttccagaaccg 920
>ref|XM_851512.1| PREDICTED: Canis familiaris homeobox C13, transcript variant 4 (HOXC13), mRNA Length = 972 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 882 gcgccaggtcaccatctggttccagaaccg 911
>ref|XM_851475.1| PREDICTED: Canis familiaris homeobox C13, transcript variant 3 (HOXC13), mRNA Length = 966 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 876 gcgccaggtcaccatctggttccagaaccg 905
>ref|XM_851433.1| PREDICTED: Canis familiaris homeobox C13, transcript variant 2 (HOXC13), mRNA Length = 1054 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 885 gcgccaggtcaccatctggttccagaaccg 914
>emb|AL357712.10| Human DNA sequence from clone GS1-756B1 on chromosome 10 Contains a novel pseudogene (FLJ34719 FLJ14936) and the 3' end of a novel gene, complete sequence Length = 110645 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 99 agaatcgcctgagccaggggag 120 |||||||||||||||||||||| Sbjct: 38936 agaatcgcctgagccaggggag 38915
>emb|X16159.1|GDCHOX7 Chicken DNA for CHox 7 homeo box gene Length = 374 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgc 401 |||||||||||||||||||||| Sbjct: 210 tctggttccagaaccgccgcgc 231
>gb|AC116663.1| Rattus norvegicus, clone RP31-109I17, complete sequence Length = 165658 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 52492 gcgccaggtcaccatctggttccagaaccg 52521
>ref|NM_070250.1| Caenorhabditis elegans C47A4.5 (C47A4.5) mRNA, complete cds Length = 228 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 254 agcggcggctggcgctggagcaggtg 279 ||||||||||||||||||||| |||| Sbjct: 165 agcggcggctggcgctggagccggtg 140
>ref|NM_204659.1| Gallus gallus transcription factor Gbx-1 (GBX-1), mRNA Length = 1109 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgc 401 |||||||||||||||||||||| Sbjct: 651 tctggttccagaaccgccgcgc 672
>ref|XM_235695.3| PREDICTED: Rattus norvegicus similar to homeodomain protein (LOC315337), mRNA Length = 2411 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gcgccaggtcgccgtctggttccagaaccg 395 |||||||||| || |||||||||||||||| Sbjct: 982 gcgccaggtcaccatctggttccagaaccg 1011
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21 Length = 187401 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 381 ctggttccagaaccgccgcgcccgct 406 ||||||||||||||||||| |||||| Sbjct: 145880 ctggttccagaaccgccgctcccgct 145855
>dbj|BS000129.1| Pan troglodytes chromosome 22 clone:PTB-242K04, map 22, complete sequences Length = 30054 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 99 agaatcgcctgagccaggggag 120 |||||||||||||||||||||| Sbjct: 13682 agaatcgcctgagccaggggag 13703
>dbj|AP001741.1| Homo sapiens genomic DNA, chromosome 21q, section 85/105 Length = 39322 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 99 agaatcgcctgagccaggggag 120 |||||||||||||||||||||| Sbjct: 34304 agaatcgcctgagccaggggag 34325
>dbj|AK107305.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D01, full insert sequence Length = 1247 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 381 ctggttccagaaccgccgcgcccgct 406 ||||||||||||||||||| |||||| Sbjct: 449 ctggttccagaaccgccgctcccgct 474
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 264 ggcgctggagcaggtgcgcgcgctgg 289 ||||||||||||||||||||| |||| Sbjct: 1866643 ggcgctggagcaggtgcgcgccctgg 1866618
>emb|AM234775.1| Zea mays partial mRNA for WOX11/12B protein Length = 195 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 381 ctggttccagaaccgccgcgcccgct 406 ||||||||||||||||||| |||||| Sbjct: 156 ctggttccagaaccgccgctcccgct 181
>emb|AM234774.1| Zea mays partial mRNA for WOX11/12A protein (wox9C gene) Length = 195 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 381 ctggttccagaaccgccgcgcccgct 406 ||||||||||||||||||| |||||| Sbjct: 156 ctggttccagaaccgccgctcccgct 181
>emb|Z82263.1|CEC47A4 Caenorhabditis elegans Cosmid C47A4, complete sequence Length = 40664 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 254 agcggcggctggcgctggagcaggtg 279 ||||||||||||||||||||| |||| Sbjct: 33458 agcggcggctggcgctggagccggtg 33433
>dbj|AB050015.1| Gallus gallus Gbx-1 mRNA for transcription factor Gbx-1, complete cds Length = 1109 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcgc 401 |||||||||||||||||||||| Sbjct: 651 tctggttccagaaccgccgcgc 672
>dbj|AP001610.1| Homo sapiens genomic DNA, chromosome 21, clone:CIT2533B8, MX1-D21S171 region, complete sequence Length = 132110 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 99 agaatcgcctgagccaggggag 120 |||||||||||||||||||||| Sbjct: 131331 agaatcgcctgagccaggggag 131352
>ref|NM_121519.2| Arabidopsis thaliana ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3); DNA binding / transcription factor AT5G15150 (ATHB-3) mRNA, complete cds Length = 1480 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 tggaagacaaagcagctcgag 426 ||||||||||||||||||||| Sbjct: 782 tggaagacaaagcagctcgag 802
>ref|XM_526562.1| PREDICTED: Pan troglodytes similar to Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox) (LOC471180), mRNA Length = 1182 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 889 tggttccagaaccgccgcgcc 909
>ref|XM_517087.1| PREDICTED: Pan troglodytes similar to MSX1 protein (LOC461092), mRNA Length = 1905 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 1624 tggttccagaaccgccgcgcc 1644
>ref|XM_525781.1| PREDICTED: Pan troglodytes similar to Ventral anterior homeobox 2 (LOC470400), mRNA Length = 1887 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 1456 gtctggttccagaaccgccgc 1476
>ref|XM_428966.1| PREDICTED: Gallus gallus similar to TRANSCRIPTION FACTOR LBX1 (LOC431414), partial mRNA Length = 421 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 381 ctggttccagaaccgccgcgc 401 ||||||||||||||||||||| Sbjct: 349 ctggttccagaaccgccgcgc 369
>ref|XM_427550.1| PREDICTED: Gallus gallus similar to homeobox protein GSH-2 (LOC429994), partial mRNA Length = 341 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgcg 400 ||||||||||||||||||||| Sbjct: 169 tctggttccagaaccgccgcg 189
>ref|XM_589627.2| PREDICTED: Bos taurus similar to Ventral anterior homeobox 2 (LOC539808), mRNA Length = 861 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 433 gtctggttccagaaccgccgc 453
>gb|BC017199.2| Homo sapiens paired-like homeobox 2b, mRNA (cDNA clone MGC:1678 IMAGE:3161284), complete cds Length = 1497 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 529 tggttccagaaccgccgcgcc 549
>ref|NM_002448.2| Homo sapiens msh homeobox homolog 1 (Drosophila) (MSX1), mRNA Length = 1944 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 883 tggttccagaaccgccgcgcc 903
>ref|NM_012476.1| Homo sapiens ventral anterior homeobox 2 (VAX2), mRNA Length = 1164 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 474 gtctggttccagaaccgccgc 494
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 cgctggagcaggtgcgcgcgc 286 ||||||||||||||||||||| Sbjct: 839780 cgctggagcaggtgcgcgcgc 839800
>ref|XM_847747.1| PREDICTED: Canis familiaris similar to Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox) (LOC610284), mRNA Length = 945 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 433 tggttccagaaccgccgcgcc 453
>ref|NM_003924.2| Homo sapiens paired-like homeobox 2b (PHOX2B), mRNA Length = 3029 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 793 tggttccagaaccgccgcgcc 813
>emb|CR726436.2|CNS0GNGQ Tetraodon nigroviridis full-length cDNA Length = 1600 Score = 42.1 bits (21), Expect = 1.8 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Minus Query: 237 cgggctgggcgggaagaagcggcggctggcgct 269 ||||||||||||||||||| ||| ||||||||| Sbjct: 736 cgggctgggcgggaagaaggggc-gctggcgct 705
>gb|AF426432.1| Homo sapiens muscle segment homeobox 1 (MSX1) gene, complete cds Length = 5173 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 3432 tggttccagaaccgccgcgcc 3452
>ref|XM_968375.1| PREDICTED: Tribolium castaneum similar to Retinal homeobox protein Rx (DRx1) (DRx) (LOC662264), mRNA Length = 837 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 469 tggttccagaaccgccgcgcc 489
>emb|Y17791.1|HSP17791 Homo sapiens mRNA for homeobox protein VAX2 Length = 1164 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 474 gtctggttccagaaccgccgc 494
>ref|XM_777884.1| PREDICTED: Strongylocentrotus purpuratus similar to CG1650-PA (LOC577669), mRNA Length = 1419 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 1096 tggttccagaaccgccgcgcc 1116
>emb|X62644.1|ATHB3MR A.thaliana mRNA for homeobox-leucine zipper protein Athb-3 Length = 656 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 tggaagacaaagcagctcgag 426 ||||||||||||||||||||| Sbjct: 406 tggaagacaaagcagctcgag 426
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 259 cggctggcgctggagcaggtgcgcg 283 |||||| |||||||||||||||||| Sbjct: 56116 cggctgccgctggagcaggtgcgcg 56092
>emb|AL353993.1|ATF8M21 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project) Length = 103996 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 tggaagacaaagcagctcgag 426 ||||||||||||||||||||| Sbjct: 18863 tggaagacaaagcagctcgag 18843
>gb|BT007797.1| Synthetic construct Homo sapiens ventral anterior homeobox 2 mRNA, partial cds Length = 873 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>gb|BT007035.1| Homo sapiens ventral anterior homeobox 2 mRNA, complete cds Length = 873 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>gb|AE011696.1| Xanthomonas axonopodis pv. citri str. 306, section 74 of 469 of the complete genome Length = 11599 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 cgctggagcaggtgcgcgcgc 286 ||||||||||||||||||||| Sbjct: 5482 cgctggagcaggtgcgcgcgc 5502
>gb|AC092437.4| Homo sapiens BAC clone RP11-326I19 from 4, complete sequence Length = 203583 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 82959 tggttccagaaccgccgcgcc 82979
>gb|AC105389.3| Homo sapiens BAC clone RP11-227F19 from 4, complete sequence Length = 187067 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 103029 tggttccagaaccgccgcgcc 103009
>gb|AF299324.1|AF299324 Azorhizobium caulinodans pyruvate dehydrogenase alpha subunit (pdhA) and pyruvate dehydrogenase beta subunit (pdhB) genes, complete cds; and dihydrolipoamide S-acetyltransferase (pdhC) gene, partial cds Length = 3134 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 gcaaggcccgcatcgcccgcg 349 ||||||||||||||||||||| Sbjct: 2563 gcaaggcccgcatcgcccgcg 2583
>gb|AY633714.1| Gallus gallus ladybird-like homeobox 3 (Lbx3) mRNA, complete cds Length = 1072 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 381 ctggttccagaaccgccgcgc 401 ||||||||||||||||||||| Sbjct: 715 ctggttccagaaccgccgcgc 735
>gb|DQ067471.1|DQ067470S2 Macaca mulatta msh homeobox 1-like protein (MSX1) gene, exon 2 and complete cds Length = 1071 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 471 tggttccagaaccgccgcgcc 491
>gb|DQ067469.1|DQ067468S2 Pan troglodytes verus msh homeobox 1-like protein (MSX1) gene, exon 2 and complete cds Length = 1429 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 829 tggttccagaaccgccgcgcc 849
>gb|DQ067483.1| Perodicticus potto msh homeobox 1-like protein (MSX1) gene, complete cds Length = 3504 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 2881 tggttccagaaccgccgcgcc 2901
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 tcgcccgcgacctcggcctgc 361 ||||||||||||||||||||| Sbjct: 31822 tcgcccgcgacctcggcctgc 31802
>gb|U91514.2|DPU91514 Drosophila picticornis pair-rule transcription factor even-skipped (eve) gene, promoter region and complete cds Length = 5012 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 4263 gtctggttccagaaccgccgc 4283
>emb|BX831916.1|CNS0A0ZH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH39ZG04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1345 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 tggaagacaaagcagctcgag 426 ||||||||||||||||||||| Sbjct: 685 tggaagacaaagcagctcgag 705
>gb|AF117979.1|AF117979 Homo sapiens homeodomain transcription factor NBPHOX (PMX2B) gene, complete cds Length = 4885 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 2649 tggttccagaaccgccgcgcc 2669
>ref|NM_022637.1| Rattus norvegicus ventral anterior homeobox 2 (Vax2), mRNA Length = 879 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>gb|AE004796.1| Pseudomonas aeruginosa PAO1, section 357 of 529 of the complete genome Length = 12098 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 atcgcccgcgacctcggcctg 360 ||||||||||||||||||||| Sbjct: 4354 atcgcccgcgacctcggcctg 4374
>gb|AC007040.2|AC007040 Homo sapiens BAC clone RP11-298H3 from 2, complete sequence Length = 181671 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 80945 gtctggttccagaaccgccgc 80965
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 ggcgctggagcaggtgcgcgc 284 ||||||||||||||||||||| Sbjct: 4014026 ggcgctggagcaggtgcgcgc 4014006
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 ctcggcctgcacccgcgccag 372 ||||||||||||||||||||| Sbjct: 1225572 ctcggcctgcacccgcgccag 1225552
>gb|AY892396.1| Synthetic construct Homo sapiens clone FLH014960.01L ventral anterior homeobox 2 (VAX2) mRNA, partial cds Length = 873 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>gb|AY892395.1| Synthetic construct Homo sapiens clone FLH014959.01L ventral anterior homeobox 2 (VAX2) mRNA, partial cds Length = 873 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>gb|AY889916.1| Synthetic construct Homo sapiens clone FLH014963.01X ventral anterior homeobox 2 (VAX2) mRNA, complete cds Length = 873 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>gb|AF113516.1|AF113516 Rattus norvegicus ventral anterior homeobox 2 (Vax2) mRNA, complete cds Length = 879 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 442 gtctggttccagaaccgccgc 462
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 353 tcggcctgcacccgcgccagg 373 ||||||||||||||||||||| Sbjct: 3653338 tcggcctgcacccgcgccagg 3653318
>gb|BC006336.2| Homo sapiens ventral anterior homeobox 2, mRNA (cDNA clone MGC:12577 IMAGE:4304066), complete cds Length = 1140 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgc 399 ||||||||||||||||||||| Sbjct: 449 gtctggttccagaaccgccgc 469
>gb|BC067353.1| Homo sapiens msh homeobox homolog 1 (Drosophila), mRNA (cDNA clone MGC:78580 IMAGE:4893288), complete cds Length = 1345 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 650 tggttccagaaccgccgcgcc 670
>gb|BC021285.2| Homo sapiens msh homeobox homolog 1 (Drosophila), mRNA (cDNA clone IMAGE:5018103), partial cds Length = 1546 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 857 tggttccagaaccgccgcgcc 877
>gb|DQ084247.1| Uncultured bacterium BAC10-4, complete fosmid sequence Length = 39827 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gcatcgcccgcgacctcggcc 358 ||||||||||||||||||||| Sbjct: 36450 gcatcgcccgcgacctcggcc 36430
>gb|M76732.1|HUMHOX702 Human HOX7 gene, exon 2 and complete cds Length = 2533 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 801 tggttccagaaccgccgcgcc 821
>gb|U09340.1|ATU09340 Arabidopsis thaliana clone HAT7 homeobox protein mRNA, complete cds Length = 1298 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 tggaagacaaagcagctcgag 426 ||||||||||||||||||||| Sbjct: 547 tggaagacaaagcagctcgag 567
>gb|M97676.1|HUMHOX7 Homo sapiens (region 7) homeobox protein (HOX7) mRNA, complete cds Length = 1713 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 877 tggttccagaaccgccgcgcc 897
>dbj|D82344.1| Homo sapiens mRNA for NBPhox, complete cds Length = 3029 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 793 tggttccagaaccgccgcgcc 813
>dbj|AB015671.1| Homo sapiens NBPhox gene, complete cds Length = 5508 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tggttccagaaccgccgcgcc 402 ||||||||||||||||||||| Sbjct: 3179 tggttccagaaccgccgcgcc 3199
>gb|AY662674.1| Homo sapiens predicted NUP98/PRRX2 fusion protein mRNA, partial cds Length = 804 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgcgcc 402 |||||||| ||||||||||||||| Sbjct: 499 gtctggtttcagaaccgccgcgcc 522
>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08, complete sequence Length = 138054 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 agcggcggctggcgctggag 273 |||||||||||||||||||| Sbjct: 23409 agcggcggctggcgctggag 23390
>gb|AY308812.1| Canis familiaris homeobox A7 gene, partial sequence Length = 290 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgc 399 |||||||||||||||||||| Sbjct: 38 tctggttccagaaccgccgc 57
>gb|AC167240.5| Mus musculus BAC clone RP24-548A13 from chromosome 7, complete sequence Length = 218177 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 gtctggttccagaaccgccg 398 |||||||||||||||||||| Sbjct: 203600 gtctggttccagaaccgccg 203581
>ref|NM_185475.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3084 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 ggcgctggagcaggtgcgcgcgct 287 ||||||||||| |||||||||||| Sbjct: 1409 ggcgctggagctggtgcgcgcgct 1432
>gb|AC150428.3| Branchiostoma floridae clone CH302-86J11, complete sequence Length = 193518 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 tctggttccagaaccgccgc 399 |||||||||||||||||||| Sbjct: 135219 tctggttccagaaccgccgc 135200
>gb|AC150426.3| Branchiostoma floridae clone CH302-83B17, complete sequence Length = 192173 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 tctggttccagaaccgccgc 399 |||||||||||||||||||| Sbjct: 66686 tctggttccagaaccgccgc 66667
>ref|XM_482830.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1065 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccg 398 |||||||||||||||||||| Sbjct: 649 gtctggttccagaaccgccg 668
>ref|XM_521638.1| PREDICTED: Pan troglodytes similar to NK6 transcription factor related, locus 2; NK homeobox family 6, B; glial and testis-specific homeobox protein; homeobox 6B (LOC466238), mRNA Length = 831 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccg 398 |||||||||||||||||||| Sbjct: 580 gtctggttccagaaccgccg 599
>ref|XM_508090.1| PREDICTED: Pan troglodytes similar to homeodomain protein (LOC450798), mRNA Length = 2142 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgc 399 |||||||||||||||||||| Sbjct: 1886 tctggttccagaaccgccgc 1905
>ref|XM_470054.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1491 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 ggcgggaagaagcggcggctggcg 267 ||||||||||||||||||| |||| Sbjct: 338 ggcgggaagaagcggcggccggcg 315
>ref|XM_520310.1| PREDICTED: Pan troglodytes similar to Paired mesoderm homeobox protein 2 (PRX-2) (Paired related homeobox protein 2) (LOC464792), mRNA Length = 708 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgcgcc 402 |||||||| ||||||||||||||| Sbjct: 394 gtctggtttcagaaccgccgcgcc 417
>ref|XM_519011.1| PREDICTED: Pan troglodytes similar to homeobox protein A7; homeobox protein HOX-1A (LOC463310), mRNA Length = 3852 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgc 399 |||||||||||||||||||| Sbjct: 1604 tctggttccagaaccgccgc 1623 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgc 399 |||||||||||||||||||| Sbjct: 725 tctggttccagaaccgccgc 744
>ref|XM_470182.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1167 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 agcggcggctggcgctggag 273 |||||||||||||||||||| Sbjct: 752 agcggcggctggcgctggag 771
>ref|NM_053869.1| Rattus norvegicus paired-like homeobox 2a (Phox2a), mRNA Length = 1608 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccg 398 |||||||||||||||||||| Sbjct: 602 gtctggttccagaaccgccg 621
>ref|NM_006168.1| Homo sapiens NK6 transcription factor related, locus 1 (Drosophila) (NKX6-1), mRNA Length = 1116 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccg 398 |||||||||||||||||||| Sbjct: 850 gtctggttccagaaccgccg 869
>ref|XM_472640.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1410 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 341 tcgcccgcgacctcggcctgcacc 364 ||||| |||||||||||||||||| Sbjct: 685 tcgccggcgacctcggcctgcacc 662
>ref|NM_014562.2| Homo sapiens orthodenticle homolog 1 (Drosophila) (OTX1), mRNA Length = 2176 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgcgcc 402 ||||||||| |||||||||||||| Sbjct: 498 gtctggttcaagaaccgccgcgcc 521
>ref|NM_016307.3| Homo sapiens paired related homeobox 2 (PRRX2), mRNA Length = 1327 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgcgcc 402 |||||||| ||||||||||||||| Sbjct: 675 gtctggtttcagaaccgccgcgcc 698
>ref|NM_053651.1| Rattus norvegicus NK2 transcription factor related, locus 5 (Drosophila) (Nkx2-5), mRNA Length = 1342 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgc 399 |||||||||||||||||||| Sbjct: 641 tctggttccagaaccgccgc 660
>gb|BT023887.1| Drosophila melanogaster RE44291 full insert cDNA Length = 2351 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccg 398 |||||||||||||||||||| Sbjct: 827 gtctggttccagaaccgccg 846
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 ggcccgcatcgcccgcgacctcggcctg 360 ||||||||||||||||| || ||||||| Sbjct: 3035311 ggcccgcatcgcccgcgcccgcggcctg 3035338
>gb|BC001800.1| Homo sapiens orthopedia homolog (Drosophila), mRNA (cDNA clone MGC:3161 IMAGE:3354882), complete cds Length = 2702 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgcgcc 402 ||||||||||||||||| |||||| Sbjct: 596 gtctggttccagaaccgacgcgcc 619
>ref|XM_600319.2| PREDICTED: Bos taurus similar to H6 homeo box 3 (LOC522046), mRNA Length = 1080 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgc 399 |||||||||||||||||||| Sbjct: 824 tctggttccagaaccgccgc 843
>ref|XM_415813.1| PREDICTED: Gallus gallus similar to OG9 homeobox gene (LOC417567), mRNA Length = 803 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccg 398 |||||||||||||||||||| Sbjct: 268 gtctggttccagaaccgccg 287
>ref|XM_425299.1| PREDICTED: Gallus gallus similar to LIM class homeodomain protein (LOC427724), mRNA Length = 1368 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccg 398 |||||||||||||||||||| Sbjct: 844 gtctggttccagaaccgccg 863
>ref|XM_584327.2| PREDICTED: Bos taurus similar to paired-like homeobox 2a (LOC507670), mRNA Length = 1031 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccg 398 |||||||||||||||||||| Sbjct: 558 gtctggttccagaaccgccg 577
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 aaggcccgcatcgcccgcga 350 |||||||||||||||||||| Sbjct: 580773 aaggcccgcatcgcccgcga 580792
>ref|XM_612378.2| PREDICTED: Bos taurus similar to orthodenticle 1 (LOC540628), mRNA Length = 1338 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgcgcc 402 ||||||||| |||||||||||||| Sbjct: 520 gtctggttcaagaaccgccgcgcc 543
>gb|BC058852.1| Mus musculus distal-less homeobox 3, mRNA (cDNA clone MGC:60844 IMAGE:30012395), complete cds Length = 2631 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgc 399 |||||||||||||||||||| Sbjct: 727 tctggttccagaaccgccgc 746
>gb|AY640310.1| Gallus gallus homeodomain transcription factor DLX3 (DLX3) mRNA, complete cds Length = 1150 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 tctggttccagaaccgccgc 399 |||||||||||||||||||| Sbjct: 598 tctggttccagaaccgccgc 617
>gb|BC010540.1| Homo sapiens chromosome 11 open reading frame2, mRNA (cDNA clone MGC:17523 IMAGE:3458443), complete cds Length = 2500 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 agcggcggctggcgctggagcagg 277 ||||||||||||||| |||||||| Sbjct: 1073 agcggcggctggcgcaggagcagg 1096
>ref|XM_954228.1| Neurospora crassa OR74A hypothetical protein (NCU08231.1) partial mRNA Length = 1449 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 caaagaatcgcctgagccagggga 119 ||||||||||| |||||||||||| Sbjct: 1180 caaagaatcgcttgagccagggga 1157
>gb|BC014645.1| Homo sapiens paired related homeobox 2, mRNA (cDNA clone MGC:19843 IMAGE:4553935), complete cds Length = 1327 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgcgcc 402 |||||||| ||||||||||||||| Sbjct: 675 gtctggtttcagaaccgccgcgcc 698
>gb|BC007621.1| Homo sapiens orthodenticle homolog 1 (Drosophila), mRNA (cDNA clone MGC:15736 IMAGE:3355563), complete cds Length = 2155 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 gtctggttccagaaccgccgcgcc 402 ||||||||| |||||||||||||| Sbjct: 470 gtctggttcaagaaccgccgcgcc 493
>gb|BC017438.1| Homo sapiens chromosome 11 open reading frame2, mRNA (cDNA clone MGC:12952 IMAGE:2960352), complete cds Length = 2565 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 agcggcggctggcgctggagcagg 277 ||||||||||||||| |||||||| Sbjct: 1067 agcggcggctggcgcaggagcagg 1090 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,765,990 Number of Sequences: 3902068 Number of extensions: 2765990 Number of successful extensions: 59549 Number of sequences better than 10.0: 556 Number of HSP's better than 10.0 without gapping: 566 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56519 Number of HSP's gapped (non-prelim): 2993 length of query: 523 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 500 effective length of database: 17,143,297,704 effective search space: 8571648852000 effective search space used: 8571648852000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
