Clone Information

BLAST Search Result

Clone Name	bart23c11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	NIFA_AZOLI (P54929) Nif-specific regulatory protein	34	0.28
2	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	34	0.28
3	DHR15_WHEAT (Q00742) Dehydrin Rab15	33	0.47
4	DH11_GOSHI (P09442) Late embryogenesis abundant protein D-11 (LE...	33	0.47
5	IF2_DESDG (Q30WJ0) Translation initiation factor IF-2	33	0.62
6	UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)	33	0.62
7	DHR21_ORYSA (P12253) Water stress-inducible protein Rab21	32	1.1
8	ELN_CHICK (P07916) Elastin precursor (Tropoelastin) (Fragment)	32	1.4
9	DHN4_HORVU (P12949) Dehydrin DHN4 (B18)	32	1.8
10	CSD_MYCPA (Q9KII6) Probable cysteine desulfurase (EC 2.8.1.7)	32	1.8
11	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	32	1.8
12	IF2_THEFY (Q47RV1) Translation initiation factor IF-2	28	1.8
13	DHN3_HORVU (P12948) Dehydrin DHN3 (B17)	31	2.3
14	DH16D_ORYSA (P22913) Dehydrin Rab16D	31	2.3
15	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	31	2.3
16	OSB10_HUMAN (Q9BXB5) Oxysterol-binding protein-related protein 1...	31	3.1
17	DH16C_ORYSA (P22912) Dehydrin Rab16C	31	3.1
18	CN102_MOUSE (Q80XC6) Protein C14orf102 homolog	31	3.1
19	CLPB_AGRT5 (Q7CU92) Chaperone clpB	30	4.0
20	DH16B_ORYSA (P22911) Dehydrin Rab16B	30	4.0
21	CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor	30	5.2
22	CN032_MOUSE (Q8BH93) Protein C14orf32 homolog	30	5.2
23	COBS_HALSA (Q9HPL2) Cobalamin synthase (EC 2.-.-.-)	30	5.2
24	RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated pro...	30	5.2
25	RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated p...	30	5.2
26	RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated p...	30	5.2
27	CP007_HUMAN (Q9Y2B5) Protein C16orf7 (Protein ATP-BL)	30	5.2
28	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	30	5.2
29	SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dep...	30	6.8
30	MSP1_PLAYO (P13828) Merozoite surface protein 1 precursor (Meroz...	30	6.8
31	IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2	30	6.8
32	ZPR1_MOUSE (Q62384) Zinc-finger protein ZPR1 (Zinc finger protei...	30	6.8
33	XKR8_PANTR (Q49LS0) XK-related protein 8	30	6.8
34	XKR8_HUMAN (Q9H6D3) XK-related protein 8	30	6.8
35	PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subu...	30	6.8
36	DNAA_STRAW (Q82FD8) Chromosomal replication initiator protein dnaA	30	6.8
37	PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9	30	6.8
38	DHR25_ORYSA (P30287) Dehydrin Rab25 (Drought-resistant protein 1...	29	8.9
39	RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun...	29	8.9
40	PG36_MYCTU (P0A688) Hypothetical PE-PGRS family protein PE_PGRS36	29	8.9
41	PG36_MYCBO (P0A689) Hypothetical PE-PGRS family protein PE_PGRS36	29	8.9
42	CN102_HUMAN (Q9H7Z3) Protein C14orf102	29	8.9
43	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	29	8.9
44	NODD_RHILE (P16556) Nodulation protein D	29	8.9
45	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	29	8.9
46	RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun...	29	8.9
47	RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun...	29	8.9

>NIFA_AZOLI (P54929) Nif-specific regulatory protein|
          Length = 624

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
 Frame = -3

Query: 582 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGN----PRASIAPSV 415
           P ++    A+P+ VP   G G A P C    +   +P  GAA P       P     PS 
Sbjct: 490 PANAPKAPAMPAPVPEPAGAGSAWPACASGCSAGPSPVCGAAQPAVPVPLIPLPLPEPSA 549

Query: 414 VGARA-SGT*PTWRPWPPVSLVPVD 343
             A A + T  T    PP + VP+D
Sbjct: 550 PAAAAPAPTSVTNAAPPPAAEVPLD 574

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>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
 Frame = +1

Query: 205 GPLPGPAARPHDDSPRRVRQPGDGRPRRWAGI----------HRRGSARPWARWVRVYRH 354
           GP PGP   P    P+  + PG  +P    G+          HR G      R      H
Sbjct: 193 GPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYH 252

Query: 355 QRHWRPWPPGG 387
           Q+H +  PPGG
Sbjct: 253 QQHHQGPPPGG 263

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>DHR15_WHEAT (Q00742) Dehydrin Rab15|
          Length = 149

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 101 FQGQQHGHPATRVDEYGNP 157
           FQGQ H +PA RVDEYGNP
Sbjct: 3   FQGQ-HDNPANRVDEYGNP 20

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>DH11_GOSHI (P09442) Late embryogenesis abundant protein D-11 (LEA D-11)|
          Length = 145

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 20/60 (33%), Positives = 22/60 (36%)
 Frame = +2

Query: 92  MAHFQGQQHGHPATRVDEYGNPXXXXXXXXXXXXXXXXXHFQGQQHGRTTTRLDEYGNPV 271
           MAHFQ Q      T+ D YGNP                           T R DEYGNP+
Sbjct: 1   MAHFQNQYSAPEVTQTDAYGNP---------------------------TRRTDEYGNPI 33

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>IF2_DESDG (Q30WJ0) Translation initiation factor IF-2|
          Length = 984

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +1

Query: 205 GPLPGPAARPHDDSPRRVRQ----PGDGRPRRWAGIHRRGSARPWA 330
           GP P   ARP    P   RQ    PGDGRP   +G  R G ARP A
Sbjct: 282 GPRPA-GARPAGPRPGGPRQGDSRPGDGRPAPRSGAPRPGGARPAA 326

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>UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 316

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 21/63 (33%), Positives = 26/63 (41%)
 Frame = -3

Query: 573 SGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGARASG 394
           S A  A  +  P+  G G + P           PSA A   +G P AS A +  GA AS 
Sbjct: 30  SNAATAAAAAAPAGAGAGASKPA---------RPSAAARPAKGTPAASAATTATGADASA 80

Query: 393 T*P 385
             P
Sbjct: 81  PPP 83

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>DHR21_ORYSA (P12253) Water stress-inducible protein Rab21|
          Length = 172

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 224 QHGRTTTRLDEYGNPV 271
           QHG  T+R+DEYGNPV
Sbjct: 6   QHGHVTSRVDEYGNPV 21



 Score = 32.3 bits (72), Expect = 1.1
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 113 QHGHPATRVDEYGNP 157
           QHGH  +RVDEYGNP
Sbjct: 6   QHGHVTSRVDEYGNP 20

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>ELN_CHICK (P07916) Elastin precursor (Tropoelastin) (Fragment)|
          Length = 750

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = -3

Query: 579 GHSGAGGAVPSRVPSSVGTGGAMPGC--VPQ-TTGVVNPSAGAAVPRGNPRASIAP 421
           G  G  GAVP  VP   G  G  PG   VP    GV  P  G     G P+  + P
Sbjct: 597 GVGGVPGAVPGAVPGVPGVPGVTPGVGGVPSLVPGVGVPGVGVLPGAGIPQVGVQP 652

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>DHN4_HORVU (P12949) Dehydrin DHN4 (B18)|
          Length = 225

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 212 FQGQQHGRTTTRLDEYGNPV 271
           +QGQQHGR    +DEYGNPV
Sbjct: 3   YQGQQHGR----VDEYGNPV 18



 Score = 31.2 bits (69), Expect = 2.3
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +2

Query: 101 FQGQQHGHPATRVDEYGNP 157
           +QGQQHG    RVDEYGNP
Sbjct: 3   YQGQQHG----RVDEYGNP 17

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>CSD_MYCPA (Q9KII6) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 685

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
 Frame = -3

Query: 558 AVPSRVPSSVGTGGAMPGCVPQTTG-------------VVNPSAGAAVPRGNPRASIAPS 418
           A  S   ++ GT    PG VPQ  G                P A    PRG+   + A +
Sbjct: 73  AATSAGRTAAGTADVYPGPVPQVGGRDVYLPPPASPAPEAPPQAAPPAPRGSAPDATAAT 132

Query: 417 VVGARASGT*PTWRPWPP 364
             G  A+GT   +  W P
Sbjct: 133 SAGRAAAGTSDVYSSWVP 150

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>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
 Frame = +1

Query: 205 GPLPGPAARPHDDSPRRVRQPGDGRPRRWAGI----------HRRGSARPWARWVRVYRH 354
           G  PGP   P    P+  + PG  +P    G+          HR G      R      H
Sbjct: 185 GAGPGPKPGPGPGGPKGGKMPGGPKPGGGPGMGAPGGHPKPPHRGGGEPRGGRQHHAPYH 244

Query: 355 QRHWRPWPPGG 387
           Q+H +  PPGG
Sbjct: 245 QQHHQGPPPGG 255

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>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 28.5 bits (62), Expect(2) = 1.8
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = -3

Query: 573 SGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAP 421
           SG G     R P+S GTG   PG  P   G++ P  GA+   G P    AP
Sbjct: 168 SGMGTRPTPRPPASGGTGAPRPGPRPH-PGMMPPRPGASA--GGPPRPQAP 215



 Score = 21.6 bits (44), Expect(2) = 1.8
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 311 PRRWIPAQRRGRPSPGCRTRRGESSCG 231
           PR   P  +  RP PG    R  SS G
Sbjct: 210 PRPQAPRPQAPRPGPGTAGGRPGSSAG 236

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>DHN3_HORVU (P12948) Dehydrin DHN3 (B17)|
          Length = 161

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 113 QHGHPATRVDEYGNP 157
           +HGH   RVDEYGNP
Sbjct: 2   EHGHATNRVDEYGNP 16



 Score = 30.8 bits (68), Expect = 3.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 224 QHGRTTTRLDEYGNPV 271
           +HG  T R+DEYGNPV
Sbjct: 2   EHGHATNRVDEYGNPV 17

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>DH16D_ORYSA (P22913) Dehydrin Rab16D|
          Length = 151

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 101 FQGQQHGHPATRVDEYGNP 157
           +QGQ  GH ++R DE+GNP
Sbjct: 3   YQGQHGGHASSRADEHGNP 21

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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 24/62 (38%), Positives = 25/62 (40%)
 Frame = -3

Query: 582 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 403
           PG  GA GA     P     G   P  V    G   P AGAA P GNP A   P   GA 
Sbjct: 332 PGFPGAAGAKGEAGPQGA-RGSEGPQGVRGEPGPPGP-AGAAGPAGNPGADGQPGAKGAN 389

Query: 402 AS 397
            +
Sbjct: 390 GA 391

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>OSB10_HUMAN (Q9BXB5) Oxysterol-binding protein-related protein 10 (OSBP-related|
           protein 10) (ORP-10)
          Length = 764

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 579 GHSGAGGAVPSRVPSSVGTG-GAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 403
           G  G GG+  S   SS  T  G+ P C     GV + SA A +  G  R+S  P  V A 
Sbjct: 7   GTDGGGGSNSSSRSSSRATSAGSSPSCSLAGRGVSSRSAAAGLGGGGSRSS--PGSVAAS 64

Query: 402 ASG 394
            SG
Sbjct: 65  PSG 67

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>DH16C_ORYSA (P22912) Dehydrin Rab16C|
          Length = 164

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +2

Query: 92  MAHFQGQQHGHPATRVDEYGNP 157
           M ++QGQ HG+ A RVD YGNP
Sbjct: 1   MENYQGQ-HGYGADRVDVYGNP 21

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>CN102_MOUSE (Q80XC6) Protein C14orf102 homolog|
          Length = 1172

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +1

Query: 325 WARWVRVYRH--QRHWRPWPP 381
           W  W+ V R   QRHWRPW P
Sbjct: 586 WQIWLAVERSRDQRHWRPWRP 606

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>CLPB_AGRT5 (Q7CU92) Chaperone clpB|
          Length = 874

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 373 MAASVVGAGRPVPSVPRAV-RSRAGGSQPNAVAG 275
           +A SVVG G  V +V +AV RSRAG   PN   G
Sbjct: 568 LAKSVVGQGEAVQAVSKAVRRSRAGLQDPNRPIG 601

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>DH16B_ORYSA (P22911) Dehydrin Rab16B|
          Length = 164

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +2

Query: 92  MAHFQGQQHGHPATRVDEYGNP 157
           M ++QGQ HG+ A RVD YGNP
Sbjct: 1   MDNYQGQ-HGYGADRVDVYGNP 21

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>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 24/62 (38%), Positives = 25/62 (40%)
 Frame = -3

Query: 582 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 403
           PG  GA GA     P     G   P  V    G   P AGAA P GNP A   P   GA 
Sbjct: 339 PGFPGAVGAKGEAGPQGA-RGSEGPQGVRGEPGPPGP-AGAAGPAGNPGADGQPGAKGAN 396

Query: 402 AS 397
            +
Sbjct: 397 GA 398

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>CN032_MOUSE (Q8BH93) Protein C14orf32 homolog|
          Length = 242

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 510 PGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVV--GARASGT*PTWRPWPP 364
           PG  P +    NPSA  A+P G P +S APS V  G   +G  P+  P  P
Sbjct: 35  PGSSPWS----NPSAPPAMPSGLPPSSAAPSTVPFGPVPTGMYPSMPPTGP 81

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>COBS_HALSA (Q9HPL2) Cobalamin synthase (EC 2.-.-.-)|
          Length = 199

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -3

Query: 525 TGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGARA 400
           TG A PG +P   GV  P A A+VP      ++A   VGA A
Sbjct: 120 TGNATPGALPAVAGVALPVALASVPSPAAAGALA-GAVGAGA 160

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>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
          Length = 240

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = -3

Query: 579 GHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGARA 400
           G  G G A    VP+ V    A  G      GV  PS     P+G  R ++A + V A A
Sbjct: 102 GGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG--RGTVAAAAVAATA 159

Query: 399 S 397
           S
Sbjct: 160 S 160

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>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
           (Tissue-specific splicing protein)
          Length = 240

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = -3

Query: 579 GHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGARA 400
           G  G G A    VP+ V    A  G      GV  PS     P+G  R ++A + V A A
Sbjct: 102 GGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG--RGTVAAAAVAATA 159

Query: 399 S 397
           S
Sbjct: 160 S 160

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>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
           (Tissue-specific splicing protein)
          Length = 240

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = -3

Query: 579 GHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGARA 400
           G  G G A    VP+ V    A  G      GV  PS     P+G  R ++A + V A A
Sbjct: 102 GGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG--RGTVAAAAVAATA 159

Query: 399 S 397
           S
Sbjct: 160 S 160

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>CP007_HUMAN (Q9Y2B5) Protein C16orf7 (Protein ATP-BL)|
          Length = 438

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
 Frame = +1

Query: 208 PLPGPAARPHDDSPRRVRQPGD-GRPRRWAGIH-----RRGSARPW-ARWVRVYR 351
           P P  A RP D  P    QPG  G P  W   H     R   +R W + W R+ R
Sbjct: 369 PEPSAAPRPQDSPPTPPLQPGPWGLPHPWGTPHLDCQTRTARSRTWSSSWGRLSR 423

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 24/62 (38%), Positives = 25/62 (40%)
 Frame = -3

Query: 582 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 403
           PG  GA GA     P     G   P  V    G   P AGAA P GNP A   P   GA 
Sbjct: 332 PGFPGAVGAKGEAGPQGA-RGSEGPQGVRGEPGPPGP-AGAAGPAGNPGADGQPGAKGAN 389

Query: 402 AS 397
            +
Sbjct: 390 GA 391

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>SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 1 (SWI/SNF complex 155
            kDa subunit) (BRG1-associated factor 155) (SWI3-related
            protein)
          Length = 1104

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 21/82 (25%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
 Frame = -3

Query: 588  MCPGHSGAGGAVPSRVPS--SVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSV 415
            M PG    G  +P+   +    G+G   PG  P    ++ P      P G          
Sbjct: 1023 MMPGQPMPGRMIPAVAANIHPTGSGPTPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQQQ 1082

Query: 414  VGARASGT*PTWRPWPPVSLVP 349
                A G  P   P PP S  P
Sbjct: 1083 PPPPADGVPPPPAPGPPASATP 1104

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>MSP1_PLAYO (P13828) Merozoite surface protein 1 precursor (Merozoite surface|
            antigens) (PMMSA) (230 kDa) (PY230)
          Length = 1772

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 579  GHSGAGGAVPSRVPSSVGTG--GAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGA 406
            G SG  GA  S   +  GT   G+       T+ V  P+A AAVP  +  A   P    +
Sbjct: 991  GASGTEGATASNAATPAGTSASGSAASNASTTSDVTPPAAAAAVPSTSTPAPAQPPAANS 1050

Query: 405  RA 400
            ++
Sbjct: 1051 QS 1052

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>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2|
          Length = 924

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 208 PLPGPAARPHDDSPRRVRQPGDGRPR-RWAGIHRRGSARPWA 330
           P P P+A P   SPR     G G PR    G+ R G  RP A
Sbjct: 196 PAPRPSASPSSMSPRPGGAVGGGGPRPPRTGVPRPGGGRPGA 237

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>ZPR1_MOUSE (Q62384) Zinc-finger protein ZPR1 (Zinc finger protein 259)|
          Length = 459

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 471 SAGAAVPRGNPRASIAPSVVGARASGT*PTWRP 373
           SA  AV  G+P A++ PS   A +  T P +RP
Sbjct: 2   SASGAVQPGHPGAAVGPSPAAAASPATGPLFRP 34

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>XKR8_PANTR (Q49LS0) XK-related protein 8|
          Length = 395

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 105 WKCAISSLHGLLAAAVSVCSWLWIESD 25
           W   + +L GL + A+ + SWLW+ +D
Sbjct: 45  WAALVLALLGLASVALQLFSWLWLRAD 71

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>XKR8_HUMAN (Q9H6D3) XK-related protein 8|
          Length = 395

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 105 WKCAISSLHGLLAAAVSVCSWLWIESD 25
           W   + +L GL + A+ + SWLW+ +D
Sbjct: 45  WAALVLALLGLASVALQLFSWLWLRAD 71

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>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like|
           protein ST-
          Length = 1019

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 214 PGPAARPHDDSPRRVRQPGDGRPRR 288
           PGP    H++  RR ++PG GRPRR
Sbjct: 810 PGPGR--HEEGGRRHQRPGPGRPRR 832

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>DNAA_STRAW (Q82FD8) Chromosomal replication initiator protein dnaA|
          Length = 653

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -3

Query: 579 GHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGA 406
           GH   GG V S +P+S G  G +       TG   P+A     R NP+      V+GA
Sbjct: 275 GHVHRGGPVGSALPASSGAPGPLAAQPAPATGPGEPTA-----RLNPKYLFDTFVIGA 327

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>PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9|
          Length = 705

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 220 PAARPHDDSPRRVRQPGDGRPRRWAGIHRRGSARPW 327
           PA+  +DD P R R P +     +  I +RG    W
Sbjct: 603 PASNSYDDIPNRARSPAESENSNFTSISQRGINPRW 638

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>DHR25_ORYSA (P30287) Dehydrin Rab25 (Drought-resistant protein 1) (rDRP1)|
          Length = 228

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 92  MAHFQGQQHGHPATRVDEYGNP 157
           MA      +GHP  RVD+YGNP
Sbjct: 1   MAEHATGVYGHPYPRVDQYGNP 22

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>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = -3

Query: 582 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 403
           PG+S A     S  P S G+ G     +P   G ++PS     P   PR+    +     
Sbjct: 56  PGYSPAW----SPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPS 111

Query: 402 ASGT*PTWRPWPP 364
            S T P++ P  P
Sbjct: 112 YSPTSPSYSPTSP 124

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>PG36_MYCTU (P0A688) Hypothetical PE-PGRS family protein PE_PGRS36|
          Length = 491

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = -3

Query: 579 GHSGAGGAVPSRVPSSVGTGG----AMPGCVPQTTGV--VNPSAGAAVPRGNP 439
           G+ GAGG+  S  P SV +GG      PG      GV   N  AG A  +G P
Sbjct: 372 GNGGAGGSGGSGAPGSVSSGGVGGAGNPGGSGGNGGVWYGNGGAGGAAGQGGP 424

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>PG36_MYCBO (P0A689) Hypothetical PE-PGRS family protein PE_PGRS36|
          Length = 491

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = -3

Query: 579 GHSGAGGAVPSRVPSSVGTGG----AMPGCVPQTTGV--VNPSAGAAVPRGNP 439
           G+ GAGG+  S  P SV +GG      PG      GV   N  AG A  +G P
Sbjct: 372 GNGGAGGSGGSGAPGSVSSGGVGGAGNPGGSGGNGGVWYGNGGAGGAAGQGGP 424

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>CN102_HUMAN (Q9H7Z3) Protein C14orf102|
          Length = 1164

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = +1

Query: 325 WARWVRVYRH--QRHWRPWPP 381
           W  W+   R   QRHWRPW P
Sbjct: 577 WQIWLAAERSRDQRHWRPWRP 597

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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 24/62 (38%), Positives = 25/62 (40%)
 Frame = -3

Query: 582 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 403
           PG  GA GA     P     G   P  V    G   P AGAA P GNP A   P   GA 
Sbjct: 343 PGFPGAVGAKGEAGPQGP-RGSEGPQGVRGEPGPPGP-AGAAGPAGNPGADGQPGAKGAN 400

Query: 402 AS 397
            +
Sbjct: 401 GA 402

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>NODD_RHILE (P16556) Nodulation protein D|
          Length = 322

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +1

Query: 286 RWAGIHRRGSARPWARWVRVYRHQRHWRPWP 378
           +W  +H       W R + +    RHW P P
Sbjct: 276 QWPALHNSDPGNIWMREIMIQEASRHWNPRP 306

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 25/62 (40%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = -3

Query: 582 PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQ-TTGVVNPS--AGAAVPRGNPRASIAPSVV 412
           PG  GA GA         G  GA     PQ + G   P   AGAA P GNP A   P   
Sbjct: 332 PGFPGAAGA-----KGETGPQGARGSEGPQGSRGEPGPPGPAGAAGPAGNPGADGQPGAK 386

Query: 411 GA 406
           GA
Sbjct: 387 GA 388

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>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = -3

Query: 582  PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 403
            PG+S A     S  P S G+ G     +P   G ++PS     P   PR+    +     
Sbjct: 1559 PGYSPAW----SPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPS 1614

Query: 402  ASGT*PTWRPWPP 364
             S T P++ P  P
Sbjct: 1615 YSPTSPSYSPTSP 1627

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>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = -3

Query: 582  PGHSGAGGAVPSRVPSSVGTGGAMPGCVPQTTGVVNPSAGAAVPRGNPRASIAPSVVGAR 403
            PG+S A     S  P S G+ G     +P   G ++PS     P   PR+    +     
Sbjct: 1559 PGYSPAW----SPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPS 1614

Query: 402  ASGT*PTWRPWPP 364
             S T P++ P  P
Sbjct: 1615 YSPTSPSYSPTSP 1627


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,314,243
Number of Sequences: 219361
Number of extensions: 1398940
Number of successful extensions: 6517
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 5712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6486
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result