ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart23c05 |
|---|---|
| Clone Library Name | barley_pub |
>ERV14_YEAST (P53173) ER-derived vesicles protein ERV14| Length = 137 Score = 58.5 bits (140), Expect = 1e-08 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Frame = +1 Query: 334 WLFSFASVMALVGL--TAYQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCASFL 507 WLF A V+ + L + I +DLE DYINP + S++N ++ E L G L FL Sbjct: 3 WLFILAVVVNCINLFGQVHFTILYADLEADYINPIELCSKVNKLITPEAALHGALSLLFL 62 Query: 508 LTLNWFPFLVMAPGTYYHVKLYMNREHLID 597 L WF FL+ P Y++ N+ L+D Sbjct: 63 LNGYWFVFLLNLPVLAYNLNKIYNKVQLLD 92
>CNIH4_PONPY (Q5R9M4) Cornichon homolog 4| Length = 139 Score = 58.2 bits (139), Expect = 2e-08 Identities = 31/86 (36%), Positives = 50/86 (58%) Frame = +1 Query: 319 VELVLWLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCA 498 +E V+++FS AL+ L+ Y +I LSDLE DYIN S++N VI E ++ Sbjct: 1 MEAVVFVFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTV 60 Query: 499 SFLLTLNWFPFLVMAPGTYYHVKLYM 576 L++L+WF FL+ P +++ Y+ Sbjct: 61 LLLMSLHWFIFLLNLPVATWNIYRYI 86
>CNIH4_HUMAN (Q9P003) Cornichon homolog 4| Length = 139 Score = 58.2 bits (139), Expect = 2e-08 Identities = 31/86 (36%), Positives = 50/86 (58%) Frame = +1 Query: 319 VELVLWLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCA 498 +E V+++FS AL+ L+ Y +I LSDLE DYIN S++N VI E ++ Sbjct: 1 MEAVVFVFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTV 60 Query: 499 SFLLTLNWFPFLVMAPGTYYHVKLYM 576 L++L+WF FL+ P +++ Y+ Sbjct: 61 LLLMSLHWFIFLLNLPVATWNIYRYI 86
>CNIH4_MOUSE (Q9CX13) Cornichon homolog 4| Length = 139 Score = 57.8 bits (138), Expect = 2e-08 Identities = 31/82 (37%), Positives = 48/82 (58%) Frame = +1 Query: 319 VELVLWLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCA 498 +E V++LFS AL+ L+ Y +I LSDLE DYIN S++N VI E ++ Sbjct: 1 MEAVVFLFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELVGHTIVTV 60 Query: 499 SFLLTLNWFPFLVMAPGTYYHV 564 L++L+WF FL+ P +++ Sbjct: 61 LMLVSLHWFIFLLNLPVATWNI 82
>CNIH4_XENTR (Q6P3N5) Cornichon homolog 4| Length = 139 Score = 55.8 bits (133), Expect = 9e-08 Identities = 29/82 (35%), Positives = 47/82 (57%) Frame = +1 Query: 319 VELVLWLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCA 498 +E L++FS AL+ L+ Y +I LSDLE DYIN S++N V+ E V+ Sbjct: 1 MEAALFIFSLIDCCALIFLSVYFIITLSDLECDYINARSCCSKLNKWVVPELVGHTVVSV 60 Query: 499 SFLLTLNWFPFLVMAPGTYYHV 564 L++L+WF F++ P +++ Sbjct: 61 LMLVSLHWFIFILNLPVAAWNI 82
>CNIH_MOUSE (O35372) Cornichon homolog| Length = 144 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/83 (27%), Positives = 39/83 (46%) Frame = +1 Query: 334 WLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCASFLLT 513 ++ + AL+ + +I +L+ DY NP D + +N +V+ EY + C FL Sbjct: 10 YMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCA 69 Query: 514 LNWFPFLVMAPGTYYHVKLYMNR 582 W + P YH+ YM+R Sbjct: 70 AEWLTLGLNMPLLAYHIWRYMSR 92
>CNIH_HUMAN (O95406) Cornichon homolog (TGAM77)| Length = 144 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/83 (27%), Positives = 39/83 (46%) Frame = +1 Query: 334 WLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCASFLLT 513 ++ + AL+ + +I +L+ DY NP D + +N +V+ EY + C FL Sbjct: 10 YMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCA 69 Query: 514 LNWFPFLVMAPGTYYHVKLYMNR 582 W + P YH+ YM+R Sbjct: 70 AEWLTLGLNMPLLAYHIWRYMSR 92
>CNIH_BOVIN (Q5BIN6) Cornichon homolog| Length = 144 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/83 (27%), Positives = 39/83 (46%) Frame = +1 Query: 334 WLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCASFLLT 513 ++ + AL+ + +I +L+ DY NP D + +N +V+ EY + C FL Sbjct: 10 YMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCA 69 Query: 514 LNWFPFLVMAPGTYYHVKLYMNR 582 W + P YH+ YM+R Sbjct: 70 AEWLTLGLNMPLLAYHIWRYMSR 92
>CNIH_PONPY (Q5RDB5) Cornichon homolog| Length = 144 Score = 50.1 bits (118), Expect = 5e-06 Identities = 22/83 (26%), Positives = 38/83 (45%) Frame = +1 Query: 334 WLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCASFLLT 513 ++ + L+ + +I +L+ DY NP D + +N +V+ EY + C FL Sbjct: 10 YMLALLLTATLIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCA 69 Query: 514 LNWFPFLVMAPGTYYHVKLYMNR 582 W + P YH+ YM+R Sbjct: 70 AEWLTLGLNMPLLAYHIWRYMSR 92
>CNI_DROME (P49858) Protein cornichon| Length = 144 Score = 49.7 bits (117), Expect = 6e-06 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%) Frame = +1 Query: 343 SFASVMALVG------LTAYQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCASF 504 +F ++AL+G + +I +L+ DY NP D + +N +V+ EY L L F Sbjct: 7 AFTYIVALIGDAFLIFFAIFHVIAFDELKTDYKNPIDQCNSLNPLVLPEYLLHIFLNLLF 66 Query: 505 LLTLNWFPFLVMAPGTYYHVKLYMNR 582 L WF + P YH+ Y NR Sbjct: 67 LFCGEWFSLCINIPLIAYHIWRYKNR 92
>YEY5_SCHPO (O14038) Hypothetical protein C2C4.05 in chromosome I| Length = 134 Score = 49.7 bits (117), Expect = 6e-06 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Frame = +1 Query: 334 WLFSFASVM---ALVGLTAYQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCASF 504 W++ F S+M A + L Y + SDL+ D+INP D S ++N V+ E Q Sbjct: 5 WIY-FTSLMLTCANIMLQMYFTVMYSDLKDDFINPIDLSRKLNWYVLPEMGFQAFSALLL 63 Query: 505 LLTLNWFPFLVMAPGTYYHVKLYMNREHLID 597 LL+ W FL+ P ++ K+ M+ H+ D Sbjct: 64 LLSGAWITFLLNVPMLAWNAKMIMSNTHMHD 94
>ERV15_YEAST (P38312) ER-derived vesicles protein ERV15| Length = 142 Score = 49.7 bits (117), Expect = 6e-06 Identities = 26/72 (36%), Positives = 35/72 (48%) Frame = +1 Query: 382 YQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCASFLLTLNWFPFLVMAPGTYYH 561 Y I DLE DYIN + R+N + + E LQ + A FL WF FL+ P Y+ Sbjct: 25 YFTILYGDLEADYINSIELCKRVNRLSVPEAILQAFISALFLFNGYWFVFLLNVPVLAYN 84 Query: 562 VKLYMNREHLID 597 + HL+D Sbjct: 85 ASKVYKKTHLLD 96
>YFR3_CAEEL (Q22361) Hypothetical protein T09E8.3 in chromosome V| Length = 145 Score = 49.3 bits (116), Expect = 8e-06 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%) Frame = +1 Query: 340 FSFASVMALVGLTA---------YQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVL 492 F+FA+ L+ L A Y +IC+ +L DY NP + +N +++ EY + G Sbjct: 3 FTFAAFCYLLALIAVGFCIFFAIYTVICVDELRTDYKNPIEQCRNLNQLILPEYIIHGTF 62 Query: 493 CASFLLTLNWFPFLVMAPGTYYHVKLYMNR 582 F+ + L P +YH+ Y R Sbjct: 63 TVLFIFSWQLISILANLPLAFYHIYTYAKR 92
>CNI_DROVI (P52159) Protein cornichon| Length = 144 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%) Frame = +1 Query: 343 SFASVMALVG------LTAYQLICLSDLEFDYINPYDSSSRINAVVIIEYTLQGVLCASF 504 +F ++AL+G + +I +L+ DY NP D + +N +V+ EY L L F Sbjct: 7 AFTYIVALIGDAFLIFFAIFHVIAFDELKTDYKNPIDQCNSLNPLVLPEYLLHLFLNLLF 66 Query: 505 LLTLNWFPFLVMAPGTYYHVKLYMNR 582 L W+ + P YH+ Y NR Sbjct: 67 LFCGEWYSLCLNIPLIAYHIWRYKNR 92
>CNIH2_RAT (Q5BJU5) Cornichon homolog 2| Length = 160 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 16/99 (16%) Frame = +1 Query: 334 WLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINA----------------VVI 465 ++ + +L+ + +I +L D+ NP D + A +V+ Sbjct: 10 YMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERICCLLRKLVV 69 Query: 466 IEYTLQGVLCASFLLTLNWFPFLVMAPGTYYHVKLYMNR 582 EY++ G+ C FL W + P +YH+ Y +R Sbjct: 70 PEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHR 108
>CNIH2_MOUSE (O35089) Cornichon homolog 2 (Cornichon-like protein)| Length = 160 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 16/99 (16%) Frame = +1 Query: 334 WLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINA----------------VVI 465 ++ + +L+ + +I +L D+ NP D + A +V+ Sbjct: 10 YMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERICCLLRKLVV 69 Query: 466 IEYTLQGVLCASFLLTLNWFPFLVMAPGTYYHVKLYMNR 582 EY++ G+ C FL W + P +YH+ Y +R Sbjct: 70 PEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHR 108
>CNIH2_HUMAN (Q6PI25) Cornichon homolog 2 (Cornichon-like protein)| Length = 160 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 16/99 (16%) Frame = +1 Query: 334 WLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINA----------------VVI 465 ++ + +L+ + +I +L D+ NP D + A +V+ Sbjct: 10 YMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERICCLLRKLVV 69 Query: 466 IEYTLQGVLCASFLLTLNWFPFLVMAPGTYYHVKLYMNR 582 EY++ G+ C FL W + P +YH+ Y +R Sbjct: 70 PEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHR 108
>CNIH3_MOUSE (Q6ZWS4) Cornichon homolog 3| Length = 160 Score = 36.2 bits (82), Expect = 0.074 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 16/98 (16%) Frame = +1 Query: 334 WLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINA----------------VVI 465 ++ S AL+ + +I +L D+ +P D + ++A +V+ Sbjct: 10 YMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICFLLRKLVL 69 Query: 466 IEYTLQGVLCASFLLTLNWFPFLVMAPGTYYHVKLYMN 579 EY++ + C FL W + P +YH Y + Sbjct: 70 PEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFH 107
>CNIH3_HUMAN (Q8TBE1) Cornichon homolog 3| Length = 160 Score = 36.2 bits (82), Expect = 0.074 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 16/98 (16%) Frame = +1 Query: 334 WLFSFASVMALVGLTAYQLICLSDLEFDYINPYDSSSRINA----------------VVI 465 ++ S AL+ + +I +L D+ +P D + ++A +V+ Sbjct: 10 YMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICFLLRKLVL 69 Query: 466 IEYTLQGVLCASFLLTLNWFPFLVMAPGTYYHVKLYMN 579 EY++ + C FL W + P +YH Y + Sbjct: 70 PEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFH 107
>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2067 Score = 33.1 bits (74), Expect = 0.63 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 7/98 (7%) Frame = -1 Query: 325 VPQTCPPPPLHGTKPILLYE*VKDHAEPPPSALGLPCLCSNQPVQMDKRLRPLWA----- 161 VP + P P + +P++L P P P + N VQ K L P A Sbjct: 1720 VPSSSPAPNIQTGRPLVLSSRATPVQLPSPPCTSSPVVAPNPSVQQVKELNPDEASPQTN 1779 Query: 160 --ASMAWSPPEMRETAVSSWVWSGGEMGRGGHRRLKVS 53 A + PP T VSS + + G +RR VS Sbjct: 1780 TSADQSTLPPSQPTTVVSSLLTN--SPGSSANRRSPVS 1815
>ENV_AVIRE (P03399) Env polyprotein (Coat polyprotein) [Contains: Coat protein| GP73; Coat protein GP22] Length = 582 Score = 33.1 bits (74), Expect = 0.63 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -1 Query: 223 LPCLCSNQPVQMDKRLRPLWAASMAWSPPEMRETAVSSWVWSGG 92 LPC CS V D + P + ++A P++R SW W GG Sbjct: 45 LPCDCSGGYVSPDLPITPTPSIAVASPLPDLRVWLQGSWGWGGG 88
>NU2M_NEUCR (Q35140) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 583 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +1 Query: 313 MSVELVLWLFSFASVMALVGLTAYQLICLSDLEFDYI 423 +S+ L + +FSFA + LVG A Q++ + L+ YI Sbjct: 431 LSLSLAITIFSFAGIPPLVGFFAKQMVLSAALDNGYI 467
>NNT1_YARLI (Q6CHE9) Putative nicotinamide N-methyltransferase (EC 2.1.1.1)| Length = 273 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +1 Query: 289 SRAAAVADMSVELVLWLFSFASVMALVGLTAYQLICLSDLEFDY 420 S A V+ M VE +W + ++ + G T Y L+ LSD+ F++ Sbjct: 146 SPCADVSSMKVEGFIWGNDASELIEMSGGTGYDLVILSDVVFNH 189
>AGRN_HUMAN (O00468) Agrin precursor| Length = 2045 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/41 (34%), Positives = 17/41 (41%) Frame = -1 Query: 313 CPPPPLHGTKPILLYE*VKDHAEPPPSALGLPCLCSNQPVQ 191 C P P HG P E + H + PP +G C P Q Sbjct: 1553 CLPNPCHGGAPCQNLEAGRFHCQCPPGRVGPTCADEKSPCQ 1593 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,441,192 Number of Sequences: 219361 Number of extensions: 1864930 Number of successful extensions: 5557 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5329 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5553 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
