Clone Name | bart23c04 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ001341.1|HVACYLCOA Hordeum vulgare mRNA for putative acyl-CoA oxidase Length = 2273 Score = 1086 bits (548), Expect = 0.0 Identities = 590/600 (98%), Gaps = 3/600 (0%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| Sbjct: 1232 ctgaactgtttgcggtctatgttcctgcctgcacctatgaaggag-caatg-cgttttgc 1289 Query: 63 tgttgcaggttgcaaggtttttgatgaagaccgtctctcaggtggccactgggaaccaac 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1290 tgttgcaggttgcaaggtttttgatgaagaccgtctctcaggtggccactgggaaccaac 1349 Query: 123 ctgtcggcaccgtagcttacatgggcaacatacagcacttgatgcaatgcaaaagcgctg 182 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1350 ctgtcggcaccgtagctcacatgggcaacatacagcacttgatgcaatgcaaaagcgctg 1409 Query: 183 taaatacagccgaagactggctcaatcctgctgccgtaaaggaggtgtttgaagctaggg 242 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1410 taaatacagccgaagactgg-tcaatcctgctgccgtaaaggaggtgtttgaagctaggg 1468 Query: 243 ccctgaggatggccgtgaactgtgcccagaacatcagcaaggcgccaagccaagaagaag 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1469 ccctgaggatggccgtgaactgtgcccagaacatcagcaaggcgccaagccaagaagaag 1528 Query: 303 gtttctctgagctctcacctgatttgctcgaggctgccgtggctcacgtccagctgatca 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1529 gtttctctgagctctcacctgatttgctcgaggctgccgtggctcacgtccagctgatca 1588 Query: 363 ttgtgaccaagtttatcgagaagatgcaggaggacatccctggccctggggtgaaggagc 422 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1589 ttgtgaccaagtttatcgagaagatcgaggaggacatccctggccctggggtgaaggagc 1648 Query: 423 agcctcagaagctgtgcagcatctacgcgctccacctcctgcacaagcacctgggcgact 482 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1649 agcttcagaagctgtgcagcatctacgcgctccacctcctgcacaagcacctgggcgact 1708 Query: 483 tcctgtcgacggggtgcgtcacggccaggcagggcgcgctggccaatgagcagctcggca 542 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1709 ccctgtcgacggggtgcgtcacggccaggcagggcgcgctggccaatgagcagctcggca 1768 Query: 543 agctctacgcccaagtgcgtcctaacgcggtggcgctggtggacgcgtttgactacacgg 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1769 agctctacgcccaagtgcgtcctaacgcggtggcgctggtggacgcgtttgactacacgg 1828
>emb|X84055.1|HVCDR29 H.vulgare cdr29 gene Length = 1180 Score = 468 bits (236), Expect = e-128 Identities = 283/300 (94%), Gaps = 9/300 (3%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 142 ctgaactgtttgcggtctatgttcctgcctgcacctatgaaggagacaatgtcgttttga 201 Query: 63 tgttgcaggttgcaaggtttttgatgaagaccgtctctcaggtggccactgggaaccaac 122 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 202 tgttgcatgttgcaaggtttttgatgaagaccgtctctcaggtggccactaggaaccaac 261 Query: 123 ctgtcggcaccgtagcttacatgggcaacatacagcacttgatgcaatgcaaaagcgctg 182 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 262 ctgtcggcaccgtagcttacatgggcaacatacatcacttgatgcaatgcaaaagcgctg 321 Query: 183 taaatacagccgaagactggctcaatcctgctgccgtaaaggaggtgtttgaagctaggg 242 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 322 taaatacagccgaagactggctcaatcctgctaccgtaaagaaggtgtttgaagctaggg 381 Query: 243 ccctgaggatggccgtgaactgtgcccagaacatcagcaaggcgccaagccaagaagaag 302 ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 382 ccctgaggatggccgtgaactgtgc---------cagcaaggcgccaagccaagaagaag 432 Score = 270 bits (136), Expect = 5e-69 Identities = 168/176 (95%), Gaps = 2/176 (1%) Strand = Plus / Plus Query: 302 ggtttctctgagctctcacctgatttgctcgaggctgccgtggctcacgtccagctgatc 361 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 491 ggtttctctgagctctcacctgatttgctcgaggctgccgtggctcacgtc-agctgatc 549 Query: 362 attgtgaccaagtttatcgagaagatgcaggaggacatccctggccctggggtgaaggag 421 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 550 attgtgaccaaattcatcgagaagatgcaggaggacatccctggccctggggtgaaggag 609 Query: 422 cagcctcagaagctgtgcagcatctacgcgctccacctcctgc-acaagcacctgg 476 |||| |||||||||||||||||||||||||||||||| || | |||||||||||| Sbjct: 610 cagctccagaagctgtgcagcatctacgcgctccacctactcctacaagcacctgg 665
>gb|BT009170.1| Triticum aestivum clone wl1n.pk0102.e8:fis, full insert mRNA sequence Length = 2379 Score = 291 bits (147), Expect = 1e-75 Identities = 474/583 (81%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||| ||||||| |||||||||||||| ||||| ||||||||||||| | ||| ||| Sbjct: 1339 ctgaattgtttgctgtctatgttcctgcttgcacttatgaaggagacaatattgttctgc 1398 Query: 63 tgttgcaggttgcaaggtttttgatgaagaccgtctctcaggtggccactgggaaccaac 122 | ||||||||||||||| || | ||||||||||| ||||| || | |||| || |||| Sbjct: 1399 ttttgcaggttgcaaggattctaatgaagaccgtatctcaattgacatctggaaagcaac 1458 Query: 123 ctgtcggcaccgtagcttacatgggcaacatacagcacttgatgcaatgcaaaagcgctg 182 |||| || || | |||||||||||||| |||| | |||||||||||||| | |||| Sbjct: 1459 ctgttggtacaatggcttacatgggcaatgtacaatatctgatgcaatgcaaatgtgctg 1518 Query: 183 taaatacagccgaagactggctcaatcctgctgccgtaaaggaggtgtttgaagctaggg 242 | || ||||||||||| ||||| || |||| |||| || | |||| ||||||||| ||| Sbjct: 1519 ttaacacagccgaagattggcttaaccctgttgccatacaagaggcgtttgaagcccggg 1578 Query: 243 ccctgaggatggccgtgaactgtgcccagaacatcagcaaggcgccaagccaagaagaag 302 | || |||||||| || ||||||||||||||||| || | || ||| ||||||||||| Sbjct: 1579 ctctcaggatggcagtaaactgtgcccagaacataggccaagcagcaaaccaagaagaag 1638 Query: 303 gtttctctgagctctcacctgatttgctcgaggctgccgtggctcacgtccagctgatca 362 |||||| ||||| || ||||||||||| |||||||| || |||||| ||||| || ||| Sbjct: 1639 gtttctatgagcggtcccctgatttgctagaggctgcagtagctcacatccagttggtca 1698 Query: 363 ttgtgaccaagtttatcgagaagatgcaggaggacatccctggccctggggtgaaggagc 422 |||| |||||||| || | |||| | ||| ||||||| ||||| ||||| |||||||| | Sbjct: 1699 ttgtaaccaagttcattgcgaaggtacagcaggacattcctggacctggagtgaaggaac 1758 Query: 423 agcctcagaagctgtgcagcatctacgcgctccacctcctgcacaagcacctgggcgact 482 ||| ||||| || |||| |||| || ||| || | || ||||||||||||||||||| Sbjct: 1759 agctccagaacctttgcaatgtctatgccctctacattctccacaagcacctgggcgact 1818 Query: 483 tcctgtcgacggggtgcgtcacggccaggcagggcgcgctggccaatgagcagctcggca 542 ||||| | || |||||| |||| ||| |||||| |||||||| || |||||||| |||| Sbjct: 1819 tcctggcaaccgggtgcatcacacccaagcagggagcgctggcaaacgagcagctgggca 1878 Query: 543 agctctacgcccaagtgcgtcctaacgcggtggcgctggtgga 585 |||| ||||| || |||||||| || || || ||||||||||| Sbjct: 1879 agctttacgcacaggtgcgtccaaatgctgttgcgctggtgga 1921
>gb|AY104290.1| Zea mays PCO085555 mRNA sequence Length = 2558 Score = 278 bits (140), Expect = 2e-71 Identities = 470/580 (81%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||| ||||||| |||||||||||||| ||||| ||||||||||||| | ||| ||| Sbjct: 1405 ctgaattgtttgctgtctatgttcctgcttgcacttatgaaggagacaatattgttctgc 1464 Query: 63 tgttgcaggttgcaaggtttttgatgaagaccgtctctcaggtggccactgggaaccaac 122 | ||||||||||||||| || | ||||||||| | ||||| || | |||| || |||| Sbjct: 1465 ttttgcaggttgcaaggattctaatgaagaccttatctcaattgacatctggaaaacaac 1524 Query: 123 ctgtcggcaccgtagcttacatgggcaacatacagcacttgatgcaatgcaaaagcgctg 182 |||| || || | |||||||||||||| |||| | |||||||||||||| | |||| Sbjct: 1525 ctgttggtacaatggcttacatgggcaatgtacaatatctgatgcaatgcaaatgtgctg 1584 Query: 183 taaatacagccgaagactggctcaatcctgctgccgtaaaggaggtgtttgaagctaggg 242 | || ||||| ||||| ||||| || |||| |||| || | |||| ||||||||| |||| Sbjct: 1585 ttaacacagctgaagattggcttaaccctgttgccatacaagaggcgtttgaagccaggg 1644 Query: 243 ccctgaggatggccgtgaactgtgcccagaacatcagcaaggcgccaagccaagaagaag 302 | || |||||||| || ||||||||||||||||| || | || ||| ||||||||||| Sbjct: 1645 ctctcaggatggcagtaaactgtgcccagaacataggccaagcagcaaaccaagaagaag 1704 Query: 303 gtttctctgagctctcacctgatttgctcgaggctgccgtggctcacgtccagctgatca 362 |||||| ||||| || ||||||||||| |||||||| || |||||| ||||| || ||| Sbjct: 1705 gtttctatgagcggtcccctgatttgctagaggctgcagtagctcacatccagttggtca 1764 Query: 363 ttgtgaccaagtttatcgagaagatgcaggaggacatccctggccctggggtgaaggagc 422 |||| |||||||| || |||| ||||| ||||||| ||||| ||||| |||||||| | Sbjct: 1765 ttgtaaccaagttcatttcgaaggtgcagcaggacattcctggacctggagtgaaggaac 1824 Query: 423 agcctcagaagctgtgcagcatctacgcgctccacctcctgcacaagcacctgggcgact 482 ||| ||||| || |||| |||| || ||| || | || ||||||||||||||||||| Sbjct: 1825 agctccagaacctttgcaatgtctatgccctctacattctccacaagcacctgggcgact 1884 Query: 483 tcctgtcgacggggtgcgtcacggccaggcagggcgcgctggccaatgagcagctcggca 542 ||||| | || |||||| |||| ||| |||||| |||||||| || |||||||| |||| Sbjct: 1885 tcctggcaaccgggtgcatcacacccaagcagggagcgctggcaaacgagcagctgggca 1944 Query: 543 agctctacgcccaagtgcgtcctaacgcggtggcgctggt 582 |||| ||||| || |||||||| || || || |||||||| Sbjct: 1945 agctttacgcacaggtgcgtccaaatgctgttgcgctggt 1984
>gb|AY105897.1| Zea mays PCO085554 mRNA sequence Length = 2366 Score = 264 bits (133), Expect = 3e-67 Identities = 483/600 (80%), Gaps = 6/600 (1%) Strand = Plus / Plus Query: 9 tgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgctgttgc 68 ||||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||| Sbjct: 1343 tgtttgcggtctatgttcccgcttgcacttacgaaggagacaacgtcgttttgcttttgc 1402 Query: 69 aggttgcaaggtttttgatgaagaccgtctctcaggtggccactgggaaccaacctgtcg 128 ||||||||||| || | ||||| ||||| |||||| |||| | ||||| || ||||| | Sbjct: 1403 aggttgcaaggattctaatgaaaaccgtttctcagttggcatccgggaaacagcctgttg 1462 Query: 129 gcaccgtagcttacatgggcaacatacagcacttgatgcaatgcaaaagcgctgtaaata 188 |||| | || ||||||||||| | ||| | ||||||||||||||| ||||| | | Sbjct: 1463 gcacaatggcctacatgggcaaagtgcagtatttgatgcaatgcaaatctgctgtcagtt 1522 Query: 189 cagccgaagactggctcaatcctgctgccgtaaaggaggtgtttgaagctagggccctga 248 |||| ||||| ||||| || |||| |||| || | |||| |||||||| || || || | Sbjct: 1523 cagctgaagattggcttaaccctgatgccatacaagaggcatttgaagcaagagcgctca 1582 Query: 249 ggatggccgtgaactgtgcccagaacatcagcaaggcgccaagccaagaagaag------ 302 | ||||| || ||||||||||||||||| ||| | || |||||||||| |||| Sbjct: 1583 gaatggcggtaaactgtgcccagaacataagccaagctgcaagccaagaggaagctgcag 1642 Query: 303 gtttctctgagctctcacctgatttgctcgaggctgccgtggctcacgtccagctgatca 362 |||||| ||||| || || |||||||| |||||||| || |||||| |||||||||| | Sbjct: 1643 gtttctatgagcggtccccagatttgcttgaggctgcggtagctcacatccagctgatta 1702 Query: 363 ttgtgaccaagtttatcgagaagatgcaggaggacatccctggccctggggtgaaggagc 422 | ||||||||||| || |||||| |||| |||| || ||||| | || |||||||| | Sbjct: 1703 tcgtgaccaagttcattgagaaggtgcatcaggagattcctggacacggagtgaaggaac 1762 Query: 423 agcctcagaagctgtgcagcatctacgcgctccacctcctgcacaagcacctgggcgact 482 ||| ||| || |||| | | |||||||| || |||| ||||||||||||||||||| Sbjct: 1763 agctccaggccctctgcaacgtgtacgcgctgtacatcctccacaagcacctgggcgact 1822 Query: 483 tcctgtcgacggggtgcgtcacggccaggcagggcgcgctggccaatgagcagctcggca 542 || || |||| |||||| ||||| |||||||||| |||||||| || |||||||| |||| Sbjct: 1823 tcttggcgactgggtgcatcacgcccaggcagggagcgctggcaaacgagcagctgggca 1882 Query: 543 agctctacgcccaagtgcgtcctaacgcggtggcgctggtggacgcgtttgactacacgg 602 |||| ||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||| Sbjct: 1883 agctgtacgcgcaggtgcgtccgaacgctgtggcgctggtggatgcgttcaactacacgg 1942
>ref|XM_476282.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2010 Score = 252 bits (127), Expect = 1e-63 Identities = 334/403 (82%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||| Sbjct: 1247 ctgaattgtttgctatctatgttcctgcttgcacttatgaaggagacaatgttgttttgc 1306 Query: 63 tgttgcaggttgcaaggtttttgatgaagaccgtctctcaggtggccactgggaaccaac 122 | |||||||||||||||||| | |||||||| || || ||| | || |||| || || | Sbjct: 1307 tattgcaggttgcaaggtttctaatgaagactgtatcccagttagcttctggaaaacagc 1366 Query: 123 ctgtcggcaccgtagcttacatgggcaacatacagcacttgatgcaatgcaaaagcgctg 182 |||| || || ||||||||||||||||||||| ||||||||||||||||| | | || Sbjct: 1367 ctgttggtacaacggcttacatgggcaacatacagtacttgatgcaatgcaaatgtggtg 1426 Query: 183 taaatacagccgaagactggctcaatcctgctgccgtaaaggaggtgtttgaagctaggg 242 |||||||||| ||||| ||||| |||||||||||| || ||||| ||||||||| ||| Sbjct: 1427 taaatacagctgaagattggctaaatcctgctgccatacgagaggtatttgaagctcggg 1486 Query: 243 ccctgaggatggccgtgaactgtgcccagaacatcagcaaggcgccaagccaagaagaag 302 | || |||||||| ||||| |||||||||||||| | ||||||||||||||||||||||| Sbjct: 1487 ctctcaggatggcggtgaattgtgcccagaacataaacaaggcgccaagccaagaagaag 1546 Query: 303 gtttctctgagctctcacctgatttgctcgaggctgccgtggctcacgtccagctgatca 362 | || | |||||| || |||||| |||| |||| || ||||| || ||||| |||| | Sbjct: 1547 ggttttatgagctatcccctgatctgcttgaggtggcggtggcccatatccagttgataa 1606 Query: 363 ttgtgaccaagtttatcgagaagatgcaggaggacatccctgg 405 |||| |||||||| || ||||| | || ||||||||||||| Sbjct: 1607 ttgtaaccaagttcatagagaaattagagcaggacatccctgg 1649 Score = 121 bits (61), Expect = 3e-24 Identities = 118/137 (86%) Strand = Plus / Plus Query: 464 cacaagcacctgggcgacttcctgtcgacggggtgcgtcacggccaggcagggcgcgctg 523 |||||||| ||||| |||||||||||||||||| || |||| || |||||||| |||||| Sbjct: 1708 cacaagcatctgggtgacttcctgtcgacggggagcatcacagcaaggcagggagcgctg 1767 Query: 524 gccaatgagcagctcggcaagctctacgcccaagtgcgtcctaacgcggtggcgctggtg 583 || || |||||||| || ||||| || || || ||||| || |||||||||||||||||| Sbjct: 1768 gcaaacgagcagctgggaaagctgtatgcgcaggtgcggccgaacgcggtggcgctggtg 1827 Query: 584 gacgcgtttgactacac 600 |||||||| ||||||| Sbjct: 1828 gacgcgttcaactacac 1844
>dbj|AK100758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119B01, full insert sequence Length = 2636 Score = 252 bits (127), Expect = 1e-63 Identities = 334/403 (82%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||| Sbjct: 1411 ctgaattgtttgctatctatgttcctgcttgcacttatgaaggagacaatgttgttttgc 1470 Query: 63 tgttgcaggttgcaaggtttttgatgaagaccgtctctcaggtggccactgggaaccaac 122 | |||||||||||||||||| | |||||||| || || ||| | || |||| || || | Sbjct: 1471 tattgcaggttgcaaggtttctaatgaagactgtatcccagttagcttctggaaaacagc 1530 Query: 123 ctgtcggcaccgtagcttacatgggcaacatacagcacttgatgcaatgcaaaagcgctg 182 |||| || || ||||||||||||||||||||| ||||||||||||||||| | | || Sbjct: 1531 ctgttggtacaacggcttacatgggcaacatacagtacttgatgcaatgcaaatgtggtg 1590 Query: 183 taaatacagccgaagactggctcaatcctgctgccgtaaaggaggtgtttgaagctaggg 242 |||||||||| ||||| ||||| |||||||||||| || ||||| ||||||||| ||| Sbjct: 1591 taaatacagctgaagattggctaaatcctgctgccatacgagaggtatttgaagctcggg 1650 Query: 243 ccctgaggatggccgtgaactgtgcccagaacatcagcaaggcgccaagccaagaagaag 302 | || |||||||| ||||| |||||||||||||| | ||||||||||||||||||||||| Sbjct: 1651 ctctcaggatggcggtgaattgtgcccagaacataaacaaggcgccaagccaagaagaag 1710 Query: 303 gtttctctgagctctcacctgatttgctcgaggctgccgtggctcacgtccagctgatca 362 | || | |||||| || |||||| |||| |||| || ||||| || ||||| |||| | Sbjct: 1711 ggttttatgagctatcccctgatctgcttgaggtggcggtggcccatatccagttgataa 1770 Query: 363 ttgtgaccaagtttatcgagaagatgcaggaggacatccctgg 405 |||| |||||||| || ||||| | || ||||||||||||| Sbjct: 1771 ttgtaaccaagttcatagagaaattagagcaggacatccctgg 1813 Score = 121 bits (61), Expect = 3e-24 Identities = 118/137 (86%) Strand = Plus / Plus Query: 464 cacaagcacctgggcgacttcctgtcgacggggtgcgtcacggccaggcagggcgcgctg 523 |||||||| ||||| |||||||||||||||||| || |||| || |||||||| |||||| Sbjct: 1872 cacaagcatctgggtgacttcctgtcgacggggagcatcacagcaaggcagggagcgctg 1931 Query: 524 gccaatgagcagctcggcaagctctacgcccaagtgcgtcctaacgcggtggcgctggtg 583 || || |||||||| || ||||| || || || ||||| || |||||||||||||||||| Sbjct: 1932 gcaaacgagcagctgggaaagctgtatgcgcaggtgcggccgaacgcggtggcgctggtg 1991 Query: 584 gacgcgtttgactacac 600 |||||||| ||||||| Sbjct: 1992 gacgcgttcaactacac 2008
>dbj|AK098983.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M04, full insert sequence Length = 2385 Score = 252 bits (127), Expect = 1e-63 Identities = 334/403 (82%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||| Sbjct: 1354 ctgaattgtttgctatctatgttcctgcttgcacttatgaaggagacaatgttgttttgc 1413 Query: 63 tgttgcaggttgcaaggtttttgatgaagaccgtctctcaggtggccactgggaaccaac 122 | |||||||||||||||||| | |||||||| || || ||| | || |||| || || | Sbjct: 1414 tattgcaggttgcaaggtttctaatgaagactgtatcccagttagcttctggaaaacagc 1473 Query: 123 ctgtcggcaccgtagcttacatgggcaacatacagcacttgatgcaatgcaaaagcgctg 182 |||| || || ||||||||||||||||||||| ||||||||||||||||| | | || Sbjct: 1474 ctgttggtacaacggcttacatgggcaacatacagtacttgatgcaatgcaaatgtggtg 1533 Query: 183 taaatacagccgaagactggctcaatcctgctgccgtaaaggaggtgtttgaagctaggg 242 |||||||||| ||||| ||||| |||||||||||| || ||||| ||||||||| ||| Sbjct: 1534 taaatacagctgaagattggctaaatcctgctgccatacgagaggtatttgaagctcggg 1593 Query: 243 ccctgaggatggccgtgaactgtgcccagaacatcagcaaggcgccaagccaagaagaag 302 | || |||||||| ||||| |||||||||||||| | ||||||||||||||||||||||| Sbjct: 1594 ctctcaggatggcggtgaattgtgcccagaacataaacaaggcgccaagccaagaagaag 1653 Query: 303 gtttctctgagctctcacctgatttgctcgaggctgccgtggctcacgtccagctgatca 362 | || | |||||| || |||||| |||| |||| || ||||| || ||||| |||| | Sbjct: 1654 ggttttatgagctatcccctgatctgcttgaggtggcggtggcccatatccagttgataa 1713 Query: 363 ttgtgaccaagtttatcgagaagatgcaggaggacatccctgg 405 |||| |||||||| || ||||| | || ||||||||||||| Sbjct: 1714 ttgtaaccaagttcatagagaaattagagcaggacatccctgg 1756 Score = 121 bits (61), Expect = 3e-24 Identities = 118/137 (86%) Strand = Plus / Plus Query: 464 cacaagcacctgggcgacttcctgtcgacggggtgcgtcacggccaggcagggcgcgctg 523 |||||||| ||||| |||||||||||||||||| || |||| || |||||||| |||||| Sbjct: 1815 cacaagcatctgggtgacttcctgtcgacggggagcatcacagcaaggcagggagcgctg 1874 Query: 524 gccaatgagcagctcggcaagctctacgcccaagtgcgtcctaacgcggtggcgctggtg 583 || || |||||||| || ||||| || || || ||||| || |||||||||||||||||| Sbjct: 1875 gcaaacgagcagctgggaaagctgtatgcgcaggtgcggccgaacgcggtggcgctggtg 1934 Query: 584 gacgcgtttgactacac 600 |||||||| ||||||| Sbjct: 1935 gacgcgttcaactacac 1951
>dbj|AK104349.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-F12, full insert sequence Length = 1045 Score = 246 bits (124), Expect = 7e-62 Identities = 322/388 (82%) Strand = Plus / Plus Query: 18 tctatgttcctgcctgcaccactgaaggagacaatgtcgttttgctgttgcaggttgcaa 77 ||||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||||| Sbjct: 6 tctatgttcctgcttgcacttatgaaggagacaatgttgttttgctattgcaggttgcaa 65 Query: 78 ggtttttgatgaagaccgtctctcaggtggccactgggaaccaacctgtcggcaccgtag 137 ||||| | |||||||| || || ||| | || |||| || || ||||| || || | Sbjct: 66 ggtttctaatgaagactgtatcccagttagcttctggaaaacagcctgttggtacaacgg 125 Query: 138 cttacatgggcaacatacagcacttgatgcaatgcaaaagcgctgtaaatacagccgaag 197 |||||||||||||||||||| ||||||||||||||||| | | |||||||||||| |||| Sbjct: 126 cttacatgggcaacatacagtacttgatgcaatgcaaatgtggtgtaaatacagctgaag 185 Query: 198 actggctcaatcctgctgccgtaaaggaggtgtttgaagctagggccctgaggatggccg 257 | ||||| |||||||||||| || ||||| ||||||||| |||| || |||||||| | Sbjct: 186 attggctaaatcctgctgccatacgagaggtatttgaagctcgggctctcaggatggcgg 245 Query: 258 tgaactgtgcccagaacatcagcaaggcgccaagccaagaagaaggtttctctgagctct 317 |||| |||||||||||||| | |||||||||||||||||||||||| || | |||||| | Sbjct: 246 tgaattgtgcccagaacataaacaaggcgccaagccaagaagaagggttttatgagctat 305 Query: 318 cacctgatttgctcgaggctgccgtggctcacgtccagctgatcattgtgaccaagttta 377 | |||||| |||| |||| || ||||| || ||||| |||| ||||| |||||||| | Sbjct: 306 cccctgatctgcttgaggtggcggtggcccatatccagttgataattgtaaccaagttca 365 Query: 378 tcgagaagatgcaggaggacatccctgg 405 | ||||| | || ||||||||||||| Sbjct: 366 tagagaaattagagcaggacatccctgg 393 Score = 121 bits (61), Expect = 3e-24 Identities = 118/137 (86%) Strand = Plus / Plus Query: 464 cacaagcacctgggcgacttcctgtcgacggggtgcgtcacggccaggcagggcgcgctg 523 |||||||| ||||| |||||||||||||||||| || |||| || |||||||| |||||| Sbjct: 452 cacaagcatctgggtgacttcctgtcgacggggagcatcacagcaaggcagggagcgctg 511 Query: 524 gccaatgagcagctcggcaagctctacgcccaagtgcgtcctaacgcggtggcgctggtg 583 || || |||||||| || ||||| || || || ||||| || |||||||||||||||||| Sbjct: 512 gcaaacgagcagctgggaaagctgtatgcgcaggtgcggccgaacgcggtggcgctggtg 571 Query: 584 gacgcgtttgactacac 600 |||||||| ||||||| Sbjct: 572 gacgcgttcaactacac 588
>dbj|AK059993.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D08, full insert sequence Length = 1045 Score = 246 bits (124), Expect = 7e-62 Identities = 322/388 (82%) Strand = Plus / Plus Query: 18 tctatgttcctgcctgcaccactgaaggagacaatgtcgttttgctgttgcaggttgcaa 77 ||||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||||| Sbjct: 6 tctatgttcctgcttgcacttatgaaggagacaatgttgttttgctattgcaggttgcaa 65 Query: 78 ggtttttgatgaagaccgtctctcaggtggccactgggaaccaacctgtcggcaccgtag 137 ||||| | |||||||| || || ||| | || |||| || || ||||| || || | Sbjct: 66 ggtttctaatgaagactgtatcccagttagcttctggaaaacagcctgttggtacaacgg 125 Query: 138 cttacatgggcaacatacagcacttgatgcaatgcaaaagcgctgtaaatacagccgaag 197 |||||||||||||||||||| ||||||||||||||||| | | |||||||||||| |||| Sbjct: 126 cttacatgggcaacatacagtacttgatgcaatgcaaatgtggtgtaaatacagctgaag 185 Query: 198 actggctcaatcctgctgccgtaaaggaggtgtttgaagctagggccctgaggatggccg 257 | ||||| |||||||||||| || ||||| ||||||||| |||| || |||||||| | Sbjct: 186 attggctaaatcctgctgccatacgagaggtatttgaagctcgggctctcaggatggcgg 245 Query: 258 tgaactgtgcccagaacatcagcaaggcgccaagccaagaagaaggtttctctgagctct 317 |||| |||||||||||||| | |||||||||||||||||||||||| || | |||||| | Sbjct: 246 tgaattgtgcccagaacataaacaaggcgccaagccaagaagaagggttttatgagctat 305 Query: 318 cacctgatttgctcgaggctgccgtggctcacgtccagctgatcattgtgaccaagttta 377 | |||||| |||| |||| || ||||| || ||||| |||| ||||| |||||||| | Sbjct: 306 cccctgatctgcttgaggtggcggtggcccatatccagttgataattgtaaccaagttca 365 Query: 378 tcgagaagatgcaggaggacatccctgg 405 | ||||| | || ||||||||||||| Sbjct: 366 tagagaaattagagcaggacatccctgg 393 Score = 121 bits (61), Expect = 3e-24 Identities = 118/137 (86%) Strand = Plus / Plus Query: 464 cacaagcacctgggcgacttcctgtcgacggggtgcgtcacggccaggcagggcgcgctg 523 |||||||| ||||| |||||||||||||||||| || |||| || |||||||| |||||| Sbjct: 452 cacaagcatctgggtgacttcctgtcgacggggagcatcacagcaaggcagggagcgctg 511 Query: 524 gccaatgagcagctcggcaagctctacgcccaagtgcgtcctaacgcggtggcgctggtg 583 || || |||||||| || ||||| || || || ||||| || |||||||||||||||||| Sbjct: 512 gcaaacgagcagctgggaaagctgtatgcgcaggtgcggccgaacgcggtggcgctggtg 571 Query: 584 gacgcgtttgactacac 600 |||||||| ||||||| Sbjct: 572 gacgcgttcaactacac 588
>dbj|AK060849.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E06, full insert sequence Length = 2445 Score = 244 bits (123), Expect = 3e-61 Identities = 333/403 (82%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||| | Sbjct: 1414 ctgaattgtttgctatctatgttcctgcttgcacttatgaaggagacaatgttgttttac 1473 Query: 63 tgttgcaggttgcaaggtttttgatgaagaccgtctctcaggtggccactgggaaccaac 122 | |||||||||||||||||| | |||||||| || || ||| | || |||| || || | Sbjct: 1474 tattgcaggttgcaaggtttctaatgaagactgtatcccagttagcttctggaaaacagc 1533 Query: 123 ctgtcggcaccgtagcttacatgggcaacatacagcacttgatgcaatgcaaaagcgctg 182 |||| || || ||||||||||||||||||||| ||||||||||||||||| | | || Sbjct: 1534 ctgttggtacaacggcttacatgggcaacatacagtacttgatgcaatgcaaatgtggtg 1593 Query: 183 taaatacagccgaagactggctcaatcctgctgccgtaaaggaggtgtttgaagctaggg 242 |||||||||| ||||| ||||| |||||||||||| || ||||| ||||||||| ||| Sbjct: 1594 taaatacagctgaagattggctaaatcctgctgccatacgagaggtatttgaagctcggg 1653 Query: 243 ccctgaggatggccgtgaactgtgcccagaacatcagcaaggcgccaagccaagaagaag 302 | || |||||||| ||||| |||||||||||||| | ||||||||||||||||||||||| Sbjct: 1654 ctctcaggatggcggtgaattgtgcccagaacataaacaaggcgccaagccaagaagaag 1713 Query: 303 gtttctctgagctctcacctgatttgctcgaggctgccgtggctcacgtccagctgatca 362 | || | |||||| || |||||| |||| |||| || ||||| || ||||| |||| | Sbjct: 1714 ggttttatgagctatcccctgatctgcttgaggtggcggtggcccatatccagttgataa 1773 Query: 363 ttgtgaccaagtttatcgagaagatgcaggaggacatccctgg 405 |||| |||||||| || ||||| | || ||||||||||||| Sbjct: 1774 ttgtaaccaagttcatagagaaattagagcaggacatccctgg 1816 Score = 121 bits (61), Expect = 3e-24 Identities = 118/137 (86%) Strand = Plus / Plus Query: 464 cacaagcacctgggcgacttcctgtcgacggggtgcgtcacggccaggcagggcgcgctg 523 |||||||| ||||| |||||||||||||||||| || |||| || |||||||| |||||| Sbjct: 1875 cacaagcatctgggtgacttcctgtcgacggggagcatcacagcaaggcagggagcgctg 1934 Query: 524 gccaatgagcagctcggcaagctctacgcccaagtgcgtcctaacgcggtggcgctggtg 583 || || |||||||| || ||||| || || || ||||| || |||||||||||||||||| Sbjct: 1935 gcaaacgagcagctgggaaagctgtatgcgcaggtgcggccgaacgcggtggcgctggtg 1994 Query: 584 gacgcgtttgactacac 600 |||||||| ||||||| Sbjct: 1995 gacgcgttcaactacac 2011
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 115 bits (58), Expect = 2e-22 Identities = 103/118 (87%) Strand = Plus / Plus Query: 188 acagccgaagactggctcaatcctgctgccgtaaaggaggtgtttgaagctagggccctg 247 ||||| ||||| ||||| |||||||||||| || ||||| ||||||||| |||| || Sbjct: 230449 acagctgaagattggctaaatcctgctgccatacgagaggtatttgaagctcgggctctc 230508 Query: 248 aggatggccgtgaactgtgcccagaacatcagcaaggcgccaagccaagaagaaggtt 305 |||||||| ||||| |||||||||||||| | |||||||||||||||||||||||||| Sbjct: 230509 aggatggcggtgaattgtgcccagaacataaacaaggcgccaagccaagaagaaggtt 230566 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 464 cacaagcacctgggcgacttcctgtcgacggggtgcgtcacggccaggcagggcgcgctg 523 |||||||| ||||| |||||||||||||||||| || |||| || |||||||| |||||| Sbjct: 230971 cacaagcatctgggtgacttcctgtcgacggggagcatcacagcaaggcagggagcgctg 231030 Query: 524 gccaatgagcagctcggcaagct 546 || || |||||||| || ||||| Sbjct: 231031 gcaaacgagcagctgggaaagct 231053 Score = 77.8 bits (39), Expect = 4e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 137 gcttacatgggcaacatacagcacttgatgcaatgcaaaagcgctgtaaatacag 191 ||||||||||||||||||||| ||||||||||||||||| | | ||||||||||| Sbjct: 230248 gcttacatgggcaacatacagtacttgatgcaatgcaaatgtggtgtaaatacag 230302 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||| Sbjct: 229951 ctgaattgtttgctatctatgttcctgcttgcacttatgaaggagacaatgttgttttgc 230010 Query: 63 tgttgcaggtt 73 | ||||||||| Sbjct: 230011 tattgcaggtt 230021 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 557 gtgcgtcctaacgcggtggcgctggtggacgcgtttgactacac 600 ||||| || |||||||||||||||||||||||||| ||||||| Sbjct: 231137 gtgcggccgaacgcggtggcgctggtggacgcgttcaactacac 231180
>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0075G19 Length = 163558 Score = 115 bits (58), Expect = 2e-22 Identities = 103/118 (87%) Strand = Plus / Plus Query: 188 acagccgaagactggctcaatcctgctgccgtaaaggaggtgtttgaagctagggccctg 247 ||||| ||||| ||||| |||||||||||| || ||||| ||||||||| |||| || Sbjct: 95345 acagctgaagattggctaaatcctgctgccatacgagaggtatttgaagctcgggctctc 95404 Query: 248 aggatggccgtgaactgtgcccagaacatcagcaaggcgccaagccaagaagaaggtt 305 |||||||| ||||| |||||||||||||| | |||||||||||||||||||||||||| Sbjct: 95405 aggatggcggtgaattgtgcccagaacataaacaaggcgccaagccaagaagaaggtt 95462 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 464 cacaagcacctgggcgacttcctgtcgacggggtgcgtcacggccaggcagggcgcgctg 523 |||||||| ||||| |||||||||||||||||| || |||| || |||||||| |||||| Sbjct: 95867 cacaagcatctgggtgacttcctgtcgacggggagcatcacagcaaggcagggagcgctg 95926 Query: 524 gccaatgagcagctcggcaagct 546 || || |||||||| || ||||| Sbjct: 95927 gcaaacgagcagctgggaaagct 95949 Score = 77.8 bits (39), Expect = 4e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 137 gcttacatgggcaacatacagcacttgatgcaatgcaaaagcgctgtaaatacag 191 ||||||||||||||||||||| ||||||||||||||||| | | ||||||||||| Sbjct: 95144 gcttacatgggcaacatacagtacttgatgcaatgcaaatgtggtgtaaatacag 95198 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||| Sbjct: 94847 ctgaattgtttgctatctatgttcctgcttgcacttatgaaggagacaatgttgttttgc 94906 Query: 63 tgttgcaggtt 73 | ||||||||| Sbjct: 94907 tattgcaggtt 94917 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 557 gtgcgtcctaacgcggtggcgctggtggacgcgtttgactacac 600 ||||| || |||||||||||||||||||||||||| ||||||| Sbjct: 96033 gtgcggccgaacgcggtggcgctggtggacgcgttcaactacac 96076
>ref|NM_129124.3| Arabidopsis thaliana ACX5 (ACYL-COA OXIDASE 5); acyl-CoA oxidase/ oxidoreductase AT2G35690 (ACX5) mRNA, complete cds Length = 2377 Score = 54.0 bits (27), Expect = 5e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||| ||||||| || ||||||||||| ||||| || ||||||||||| || |||| Sbjct: 1440 ctgaattgtttgctgtatatgttcctgcttgcacatacgagggagacaatgttgtgttgc 1499 Query: 63 tgttgcaggttgcaaggtttttgatgaagac 93 ||| |||||||| || ||| |||||||||| Sbjct: 1500 agttacaggttgctagatttctgatgaagac 1530
>gb|AY096691.1| Arabidopsis thaliana putative acyl-CoA oxidase (At2g35690) mRNA, complete cds Length = 2026 Score = 54.0 bits (27), Expect = 5e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||| ||||||| || ||||||||||| ||||| || ||||||||||| || |||| Sbjct: 1232 ctgaattgtttgctgtatatgttcctgcttgcacatacgagggagacaatgttgtgttgc 1291 Query: 63 tgttgcaggttgcaaggtttttgatgaagac 93 ||| |||||||| || ||| |||||||||| Sbjct: 1292 agttacaggttgctagatttctgatgaagac 1322
>gb|AY074357.1| Arabidopsis thaliana putative acyl-CoA oxidase (At2g35690) mRNA, complete cds Length = 2393 Score = 54.0 bits (27), Expect = 5e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 3 ctgaactgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgc 62 ||||| ||||||| || ||||||||||| ||||| || ||||||||||| || |||| Sbjct: 1440 ctgaattgtttgctgtatatgttcctgcttgcacatacgagggagacaatgttgtgttgc 1499 Query: 63 tgttgcaggttgcaaggtttttgatgaagac 93 ||| |||||||| || ||| |||||||||| Sbjct: 1500 agttacaggttgctagatttctgatgaagac 1530
>gb|AF404403.1|AF404403 Glycine max acyl-CoA oxidase (ACX1;1) mRNA, complete cds Length = 2263 Score = 50.1 bits (25), Expect = 0.009 Identities = 58/69 (84%) Strand = Plus / Plus Query: 11 tttgcggtctatgttcctgcctgcaccactgaaggagacaatgtcgttttgctgttgcag 70 ||||| || ||||||||||||||||| ||||||||||||||| || | ||||| ||| Sbjct: 1379 tttgctgtttatgttcctgcctgcacgtatgaaggagacaatgttgtgcttctgttacag 1438 Query: 71 gttgcaagg 79 || |||||| Sbjct: 1439 gtggcaagg 1447
>ref|NM_117778.3| Arabidopsis thaliana ACX1 (ACYL-COA OXIDASE 1) AT4G16760 (ACX1) mRNA, complete cds Length = 2456 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 8 ctgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgt 54 |||||||| || ||||||||||||||||| |||||||||||||| Sbjct: 1402 ctgtttgctgtatatgttcctgcctgcacatacgaaggagacaatgt 1448
>gb|BT001067.1| Arabidopsis thaliana At4g16760/dl4405c mRNA, complete cds Length = 1995 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 8 ctgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgt 54 |||||||| || ||||||||||||||||| |||||||||||||| Sbjct: 1237 ctgtttgctgtatatgttcctgcctgcacatacgaaggagacaatgt 1283
>emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6 Length = 213788 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 8 ctgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgt 54 |||||||| || ||||||||||||||||| |||||||||||||| Sbjct: 190922 ctgtttgctgtatatgttcctgcctgcacatacgaaggagacaatgt 190876
>emb|AL161544.2|ATCHRIV44 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44 Length = 198735 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 8 ctgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgt 54 |||||||| || ||||||||||||||||| |||||||||||||| Sbjct: 168850 ctgtttgctgtatatgttcctgcctgcacatacgaaggagacaatgt 168804
>gb|AY058849.1| Arabidopsis thaliana AT4g16760/dl4405c mRNA, complete cds Length = 2341 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 8 ctgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgt 54 |||||||| || ||||||||||||||||| |||||||||||||| Sbjct: 1370 ctgtttgctgtatatgttcctgcctgcacatacgaaggagacaatgt 1416
>dbj|AK221943.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-46-G04 Length = 1482 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 8 ctgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgt 54 |||||||| || ||||||||||||||||| |||||||||||||| Sbjct: 504 ctgtttgctgtatatgttcctgcctgcacatacgaaggagacaatgt 550
>gb|AF057044.1|AF057044 Arabidopsis thaliana acyl-CoA oxidase (ACX1) mRNA, complete cds Length = 2300 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 8 ctgtttgcggtctatgttcctgcctgcaccactgaaggagacaatgt 54 |||||||| || ||||||||||||||||| |||||||||||||| Sbjct: 1313 ctgtttgctgtatatgttcctgcctgcacatacgaaggagacaatgt 1359
>dbj|AK048137.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130036O09 product:unclassifiable, full insert sequence Length = 2993 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 191 gccgaagactggctcaatcctg 212 |||||||||||||||||||||| Sbjct: 2823 gccgaagactggctcaatcctg 2802
>gb|AC152417.3| Mus musculus BAC clone RP23-56I21 from chromosome 10, complete sequence Length = 233783 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 191 gccgaagactggctcaatcctg 212 |||||||||||||||||||||| Sbjct: 108307 gccgaagactggctcaatcctg 108328
>emb|CT573502.2| Medicago truncatula chromosome 5 clone mte1-69f21, COMPLETE SEQUENCE Length = 89977 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Plus Query: 11 tttgcggtctatgttcctgcctgcaccactgaaggagacaat 52 ||||| || ||||||||||||||||| ||||||||||||| Sbjct: 15675 tttgcagtttatgttcctgcctgcacatatgaaggagacaat 15716
>gb|AC132135.3| Mus musculus BAC clone RP23-268C21 from 10, complete sequence Length = 168874 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 191 gccgaagactggctcaatcctg 212 |||||||||||||||||||||| Sbjct: 86641 gccgaagactggctcaatcctg 86662
>gb|AC159614.7| Mus musculus chromosome 1, clone RP24-305O23, complete sequence Length = 156924 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 407 cctggggtgaaggagcagcct 427 ||||||||||||||||||||| Sbjct: 107561 cctggggtgaaggagcagcct 107541
>gb|AC119408.23| Medicago truncatula clone mth2-5f18, complete sequence Length = 120127 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 11 tttgcggtctatgttcctgcctgcaccactgaaggagacaa 51 ||||| |||||||||||| ||||||| |||||||||||| Sbjct: 6788 tttgcagtctatgttcctacctgcacatatgaaggagacaa 6828
>gb|AC149079.7| Medicago truncatula clone mth2-75i8, complete sequence Length = 121295 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 11 tttgcggtctatgttcctgcctgcaccactgaaggagacaa 51 ||||| |||||||||||| ||||||| |||||||||||| Sbjct: 93623 tttgcagtctatgttcctacctgcacatatgaaggagacaa 93663
>emb|BX829266.1|CNS0A3HA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL85ZH08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 965 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 8 ctgtttgcggtctatgttcctgcctgcac 36 |||||||| || ||||||||||||||||| Sbjct: 62 ctgtttgctgtatatgttcctgcctgcac 90
>gb|L43668.1|CHKMCW178 Gallus domesticus DNA microsatellite marker MCW178 Length = 496 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 219 taaaggaggtgtttgaagcta 239 ||||||||||||||||||||| Sbjct: 439 taaaggaggtgtttgaagcta 419
>gb|AC121870.2| Mus musculus chromosome 9 clone RP24-121D5, complete sequence Length = 191747 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 gggtgaaggagcagcctcag 430 |||||||||||||||||||| Sbjct: 156166 gggtgaaggagcagcctcag 156147
>gb|AY752879.1| Drosophila melanogaster TAF-like protein mRNA, complete cds Length = 907 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 cctgaggatggccgtgaactgtgc 267 ||||||||||| |||||||||||| Sbjct: 831 cctgaggatgggcgtgaactgtgc 808
>gb|AC146867.3| Xenopus tropicalis clone CH216-119B15, complete sequence Length = 157383 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ccagaacatcagcaaggcgc 287 |||||||||||||||||||| Sbjct: 2571 ccagaacatcagcaaggcgc 2552
>gb|AC132140.3| Mus musculus BAC clone RP23-82C19 from chromosome 19, complete sequence Length = 278583 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 cctggccctggggtgaagga 420 |||||||||||||||||||| Sbjct: 227961 cctggccctggggtgaagga 227980
>gb|AC126944.3| Mus musculus BAC clone RP23-19A4 from chromosome 19, complete sequence Length = 184164 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 cctggccctggggtgaagga 420 |||||||||||||||||||| Sbjct: 14588 cctggccctggggtgaagga 14607
>gb|AC144866.2| Xenopus tropicalis clone ISB-367O10, complete sequence Length = 57987 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ccagaacatcagcaaggcgc 287 |||||||||||||||||||| Sbjct: 33030 ccagaacatcagcaaggcgc 33011
>gb|DQ453548.1| Ovis aries myogenin gene, exons 1 through 3 and partial cds Length = 1884 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 aggaggtgtttgaagctagggccc 245 |||||||||||||| ||||||||| Sbjct: 1372 aggaggtgtttgaaactagggccc 1395
>gb|AC144820.2| Xenopus tropicalis clone ISB-286C6, complete sequence Length = 103933 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ccagaacatcagcaaggcgc 287 |||||||||||||||||||| Sbjct: 34019 ccagaacatcagcaaggcgc 34000
>emb|AL034549.19|HS1125A11 Human DNA sequence from clone RP5-1125A11 on chromosome 20q11.1-11.23 Contains the TPM5P gene for tropomyosin 5 pseudogene, a novel gene, the 3' end of a novel gene, the 5' end of the RALY gene for RNA binding protein (autoantigenic, hnRNP-associated with lethal yellow), a Down syndrome critical region gene 5 (DSCR5) pseudogene and two CpG islands, complete sequence Length = 155567 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 cagcctcagaagctgtgcag 441 |||||||||||||||||||| Sbjct: 32781 cagcctcagaagctgtgcag 32762
>emb|AL021938.1|HS232K4 Human DNA sequence from clone RP1-232K4 on chromosome 6p22.3 Contains the 3'end of the JMJ gene for jumonji protein and 2 CpG islands, complete sequence Length = 198161 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ttgctgttgcaggttgcaag 78 |||||||||||||||||||| Sbjct: 194125 ttgctgttgcaggttgcaag 194106
>gb|AF170880.3| Streptomyces spheroides novobiocin biosynthetic gene cluster, complete sequence Length = 25617 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 568 cgcggtggcgctggtggacg 587 |||||||||||||||||||| Sbjct: 3450 cgcggtggcgctggtggacg 3431
>gb|AC165259.2| Mus musculus BAC clone RP23-146P7 from chromosome 17, complete sequence Length = 252045 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ggggtgaaggagcagcctca 429 |||||||||||||||||||| Sbjct: 104265 ggggtgaaggagcagcctca 104284
>emb|AJ292466.1|HSA292466 Homo sapiens mRNA for WDR9 protein (WDR9 gene), form B Length = 7939 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 451 gctccacctcctgcacaagcacctgggc 478 |||||| ||||||||| ||||||||||| Sbjct: 209 gctccagctcctgcaccagcacctgggc 182
>emb|AJ292465.1|HSA292465 Homo sapiens mRNA for WDR9 protein (WDR9 gene), form A Length = 7925 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 451 gctccacctcctgcacaagcacctgggc 478 |||||| ||||||||| ||||||||||| Sbjct: 209 gctccagctcctgcaccagcacctgggc 182
>emb|AJ238214.2|HSA238214 Homo sapiens mRNA originating from the Down syndrome chromosomal region-2 (21q22.3) encoding hypothetical protein Length = 12935 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 451 gctccacctcctgcacaagcacctgggc 478 |||||| ||||||||| ||||||||||| Sbjct: 229 gctccagctcctgcaccagcacctgggc 202
>gb|AC010049.7| Drosophila melanogaster 3L BAC RPCI98-3O18 (Roswell Park Cancer Institute Drosophila BAC library) complete sequence Length = 168058 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 cctgaggatggccgtgaactgtgc 267 ||||||||||| |||||||||||| Sbjct: 43338 cctgaggatgggcgtgaactgtgc 43361
>emb|CR612626.1| full-length cDNA clone CS0DI018YG11 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1176 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 451 gctccacctcctgcacaagcacctgggc 478 |||||| ||||||||| ||||||||||| Sbjct: 615 gctccagctcctgcaccagcacctgggc 588
>ref|NM_141054.1| Drosophila melanogaster CG11308-RA (sa), mRNA Length = 828 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 cctgaggatggccgtgaactgtgc 267 ||||||||||| |||||||||||| Sbjct: 752 cctgaggatgggcgtgaactgtgc 729
>gb|AC084200.22| Homo sapiens 12q BAC RP11-654D12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191886 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 451 gctccacctcctgcacaagcacctgggc 478 |||||| ||||||||| ||||||||||| Sbjct: 91893 gctccagctcctgcaccagcacctgggc 91866
>gb|AC099553.1| Drosophila melanogaster 3L BAC RP98-25G5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177608 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 cctgaggatggccgtgaactgtgc 267 ||||||||||| |||||||||||| Sbjct: 112244 cctgaggatgggcgtgaactgtgc 112267
>dbj|AB080587.1| Homo sapiens WDR9 mRNA for WD repeat protein, WDR9-form2, complete cds Length = 7633 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 451 gctccacctcctgcacaagcacctgggc 478 |||||| ||||||||| ||||||||||| Sbjct: 229 gctccagctcctgcaccagcacctgggc 202
>dbj|AB080586.1| Homo sapiens WDR9 mRNA for WD repeat protein, WDR9-form1, complete cds Length = 9380 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 451 gctccacctcctgcacaagcacctgggc 478 |||||| ||||||||| ||||||||||| Sbjct: 229 gctccagctcctgcaccagcacctgggc 202
>gb|BT023594.1| Drosophila melanogaster IP09318 full insert cDNA Length = 973 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 cctgaggatggccgtgaactgtgc 267 ||||||||||| |||||||||||| Sbjct: 794 cctgaggatgggcgtgaactgtgc 771
>gb|BC064602.1| Homo sapiens bromodomain and WD repeat domain containing 1, transcript variant 3, mRNA (cDNA clone IMAGE:5785347), complete cds Length = 2488 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 451 gctccacctcctgcacaagcacctgggc 478 |||||| ||||||||| ||||||||||| Sbjct: 261 gctccagctcctgcaccagcacctgggc 234
>gb|AF263245.1|AF263245 Micromonospora megalomicea subsp. nigra megalomicin biosynthetic gene cluster, partial sequence Length = 47981 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 ccaggcagggcgcgctggcc 526 |||||||||||||||||||| Sbjct: 38821 ccaggcagggcgcgctggcc 38840
>ref|NM_001007246.1| Homo sapiens bromodomain and WD repeat domain containing 1 (BRWD1), transcript variant 3, mRNA Length = 2488 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 451 gctccacctcctgcacaagcacctgggc 478 |||||| ||||||||| ||||||||||| Sbjct: 269 gctccagctcctgcaccagcacctgggc 242
>ref|NM_033656.2| Homo sapiens bromodomain and WD repeat domain containing 1 (BRWD1), transcript variant 2, mRNA Length = 13003 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 451 gctccacctcctgcacaagcacctgggc 478 |||||| ||||||||| ||||||||||| Sbjct: 269 gctccagctcctgcaccagcacctgggc 242
>ref|NM_018963.3| Homo sapiens bromodomain and WD repeat domain containing 1 (BRWD1), transcript variant 1, mRNA Length = 8670 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 451 gctccacctcctgcacaagcacctgggc 478 |||||| ||||||||| ||||||||||| Sbjct: 269 gctccagctcctgcaccagcacctgggc 242
>gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75 of 83 of the complete sequence Length = 314904 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 cctgaggatggccgtgaactgtgc 267 ||||||||||| |||||||||||| Sbjct: 139940 cctgaggatgggcgtgaactgtgc 139963
>dbj|AP001979.7| Homo sapiens genomic DNA, chromosome 11 clone:RP11-259P6, complete sequence Length = 147533 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gctgccgtggctcacgtcca 354 |||||||||||||||||||| Sbjct: 110494 gctgccgtggctcacgtcca 110513
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 catcagcaaggcgccaagcc 293 |||||||||||||||||||| Sbjct: 3003518 catcagcaaggcgccaagcc 3003499
>gb|AC132111.4| Mus musculus BAC clone RP24-200H19 from 14, complete sequence Length = 174164 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 cctgaggatggccgtgaact 263 |||||||||||||||||||| Sbjct: 96473 cctgaggatggccgtgaact 96454 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,889,178 Number of Sequences: 3902068 Number of extensions: 4889178 Number of successful extensions: 98943 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98668 Number of HSP's gapped (non-prelim): 253 length of query: 602 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 579 effective length of database: 17,143,297,704 effective search space: 9925969370616 effective search space used: 9925969370616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)